@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs2095: (2015-12-13 )
MNLNDRLKIEEMEEKYDSFKPRINALVEAIDDFQKHYEDYVKLREFYGSEDWFRLSEQTENNLKCGVLSEDQLFDFIGEHNELVGQFLDMSSQMYRHL
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------........-.10.....-----...20........30-----.........40........50........60........70.......--.80........90.......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------MNLNDR
L
K
-
I
E
E
M
E
E
K
Y
-----
D
SF
K
P
R
I
N
A
L
V
E
A
I
------
D
D
F
Q
K
H
Y
E
D
Y
V
K
L
R
E
F
YGS
E
D
W
F
R
L
S
EQTENNLKCGVL
S
E
D
Q
L
F
D
F
I
G--
E
H
N
E
L
V
G
Q
F
L
D
M
S
S
Q
M
Y
RHL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
93.44
48%
-92
- C1 -
4MER
-
?
A:
[1-98]
-------------------------------------------------------------------------------------------------
S
M
K
Q
D
Q
L
I
-
V
E
K
M
E
Q
T
Y
-----
E
A
F
S
P
K
L
A
N
L
I
E
A
L
------
D
A
F
K
E
H
Y
E
E
Y
A
T
L
R
N
F
Y
S
S
D
E
W
F
R
L
A
N
Q
--
P
D
I
P
C
G
V
L
S
E
D
L
L
F
D
M
I
G
--
D
H
N
Q
L
L
A
D
I
L
D
L
A
P
I
M
Y
K
H
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
91.90
50%
-98
- C1 -
4MER
-
?
A:
[5-98]
-----------------------------------------------------------------------------------------------------
D
Q
L
I
-
V
E
K
M
E
Q
T
Y
-----
E
A
F
S
P
K
L
A
N
L
I
E
A
L
------
D
A
F
K
E
H
Y
E
E
Y
A
T
L
R
N
F
Y
S
S
D
E
W
F
R
L
A
N
Q
P
--
D
I
P
C
G
V
L
S
E
D
L
L
F
D
M
I
G
--
D
H
N
Q
L
L
A
D
I
L
D
L
A
P
I
M
Y
K
H
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
88.03
46%
-97
- C1 -
4PZ1
2
?
A:
[5-98]
-----------------------------------------------------------------------------------------------------
D
Q
L
I
-
V
E
K
M
E
Q
T
Y
-----
E
A
F
S
P
K
L
A
N
L
I
E
A
L
------
D
A
F
K
E
H
Y
E
E
Y
A
T
L
R
N
F
Y
S
S
D
E
W
F
R
L
A
N
Q
P
W
D
D
I
P
S
G
V
L
S
E
D
L
L
F
D
M
I
G
--
D
H
N
Q
L
A
A
D
I
A
D
L
A
P
I
M
A
K
H
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
61.11
19%
-23
- C1 -
4H63
-
MED11_SCHPO
K:
[15-112]
------------------------------------------------------------------------------------------------S
S
D
T
Q
Q
V
Q
N
-
I
L
E
L
E
A
K
I
-----
P
D
I
L
S
S
A
G
K
C
I
E
A
I
QLNNSL
E
D
F
R
K
Y
S
K
E
F
L
E
T
V
E
F
I
S
T
G
L
R
R
Q
A
L
E
L
E
K
A
E
V
P
V
V
S
L
Q
P
K
K
R
Y
------
A
S
T
P
L
S
N
L
I
F
D
Q
S
S
K
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
60.33
16%
-41
- C1 -
3UUN
-
DMD_HUMAN
A:
[338-453]
-----------------------------------------------------------------------------------------E
V
N
L
D
R
Y
Q
T
A
L
E
E
V
L
S
W
L
L
S
A
E
D
T
L
-----
Q
A
Q
G
E
I
S
N
D
V
E
V
V
K
------
D
Q
F
H
T
H
E
G
Y
M
M
D
L
T
A
H
Q
G
R
V
G
--
N
I
L
Q
L
G
S
K
L
I
G
T
G
K
L
S
E
D
E
E
T
E
V
Q
E
--
Q
M
N
L
L
N
S
R
W
E
C
L
R
V
A
S
M
E
K
Q
S
N
L
H
R
V
L
M
D
LQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
52.86
26%
-62
- C1 -
3J67
-
DYHC_YEAST
A:
[1787-1835]
-----------------------------------------------------------------------------------------------------
E
A
M
N
-
I
E
K
K
L
S
E
S
-----
E
E
F
F
P
Q
F
D
N
L
V
E
E
Y
------
S
I
I
G
K
H
S
V
K
I
F
S
M
L
E
K
F
G
Q
F
H
W
F
Y
G
I
S
I
G
Q
F
L
S
C
F
K
R
V
F
I
T
R
V
D
E
I
L
W
--
L
L
Y
Q
E
V
Y
C
Q
F
S
T
A
L
D
K
K
F
K
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
52.47
26%
-62
- C1 -
4AKI
-
DYHC_YEAST (first)
A:
[2196-2244]
-----------------------------------------------------------------------------------------------------
E
A
M
N
-
I
E
K
K
L
S
E
S
-----
E
E
F
F
P
Q
F
D
N
L
V
E
E
Y
------
S
I
I
G
K
H
S
V
K
I
F
S
M
L
E
K
F
G
Q
F
H
W
F
Y
G
I
S
I
G
Q
F
L
S
C
F
K
R
V
F
I
T
R
V
D
E
I
L
W
--
L
L
Y
Q
E
V
Y
C
Q
F
S
T
A
L
D
K
K
F
K
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
52.46
26%
-62
- C1 -
3J68
-
DYHC_YEAST
A:
[1787-1835]
-----------------------------------------------------------------------------------------------------
E
A
M
N
-
I
E
K
K
L
S
E
S
-----
E
E
F
F
P
Q
F
D
N
L
V
E
E
Y
------
S
I
I
G
K
H
S
V
K
I
F
S
M
L
E
K
F
G
Q
F
H
W
F
Y
G
I
S
I
G
Q
F
L
S
C
F
K
R
V
F
I
T
R
V
D
E
I
L
W
--
L
L
Y
Q
E
V
Y
C
Q
F
S
T
A
L
D
K
K
F
K
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
52.36
26%
-67
- C1 -
4AKG
-
DYHC_YEAST (first)
A:
[2196-2244]
-----------------------------------------------------------------------------------------------------
E
A
M
N
-
I
E
K
K
L
S
E
S
-----
E
E
F
F
P
Q
F
D
N
L
V
E
E
Y
------
S
I
I
G
K
H
S
V
K
I
F
S
M
L
E
K
F
G
Q
F
H
W
F
Y
G
I
S
I
G
Q
F
L
S
C
F
K
R
V
F
I
T
R
V
D
E
I
L
W
--
L
L
Y
Q
E
V
Y
C
Q
F
S
T
A
L
D
K
K
F
K
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
51.62
26%
-64
- C1 -
4AI6
-
DYHC_YEAST (first)
A:
[2196-2244]
-----------------------------------------------------------------------------------------------------
E
A
M
N
-
I
E
K
K
L
S
E
S
-----
E
E
F
F
P
Q
F
D
N
L
V
E
E
Y
------
S
I
I
G
K
H
S
V
K
I
F
S
M
L
E
K
F
G
Q
F
H
W
F
Y
G
I
S
I
G
Q
F
L
S
C
F
K
R
V
F
I
T
R
V
D
E
I
L
W
--
L
L
Y
Q
E
V
Y
C
Q
F
S
T
A
L
D
K
K
F
K
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
51.23
26%
-63
- C1 -
4AKH
-
DYHC_YEAST (first)
A:
[2196-2244]
-----------------------------------------------------------------------------------------------------
E
A
M
N
-
I
E
K
K
L
S
E
S
-----
E
E
F
F
P
Q
F
D
N
L
V
E
E
Y
------
S
I
I
G
K
H
S
V
K
I
F
S
M
L
E
K
F
G
Q
F
H
W
F
Y
G
I
S
I
G
Q
F
L
S
C
F
K
R
V
F
I
T
R
V
D
E
I
L
W
--
L
L
Y
Q
E
V
Y
C
Q
F
S
T
A
L
D
K
K
F
K
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
50.06
22%
3
- C1 -
4OMH
2
COTB2_STRMJ
A:
[13-292]
IGRSSVRPY
L
E
E
C
T
R
R
F
Q
E
M
F
D
R
H
VV
T
R
P
T
K
V
E
L
T
D
A
E
L
R
E
V
I
D
D
C
N
A
A
V
APLG
K
T
V
S
D
E
R
W
I
S
Y
V
G
V
V
L
W
S
QSPRHIKD
M
E
A
F
K
A
V
C
V
L
N
C
V
T
F
V
W
D
D
M
D
P
A
L
H
-------
D
F
-----
G
L
F
L
P
Q
L
R
K
I
C
E
K
Y
------
Y
G
P
E
D
A
E
V
A
Y
E
A
A
R
A
L
V
T
S
D
H
M
F
R
D
S
P
I
K
A
A
L
C
T
---
T
S
P
E
Q
Y
F
R
F
R
V
--
T
D
I
G
-
V
D
F
W
M
K
M
S
Y
P
I
Y
R
H
P
E
F
T
E
H
A
K
T
S
L
A
A
R
M
T
T
R
G
L
T
I
V
N
D
F
Y
S
Y
D
R
E
V
S
L
GQITN
C
F
R
L
C
DVSD
E
T
A
F
K
E
F
F
Q
A
R
L
D
D
M
I
E
D
I
E
C
I
K
A
FD
Q
L
T
Q
D
V
F
L
D
L
I
Y
G
N
F
V
W
T
T
S
N-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
49.97
21%
-28
- C1 -
4OK4
1
?
A:
[30-733]
--------------------------------------------------------------------------------------------HPNLI
V
T
E
Q
D
V
A
N
-
I
A
A
S
W
E
S
Y
-----
D
A
Y
A
E
Q
L
N
A
D
K
T
N
L
------
D
A
F
M
A
E
G
V
V
V
P
M
P
K
D
A
G
G
G
----
Y
T
H
E
Q
H
K
R
N
Y
K
A
-
I
R
N
A
G
F
L
Y
Q
V
T
G
D
E
K
Y
L
T
F
A
K
D
L
L
L
A
Y
A
K
M
Y
P
S
L
GEHPNRKEQSPGRLFWQS
L
N
E
A
V
W
L
V
Y
S
I
Q
G
Y
D
A
I
IDGLA
A
E
E
K
Q
E
I
E
S
G
V
F
L
P
M
A
K
F
L
S
V
ES
P
E
T
F
N
KIH
N
L
G
T
W
A
V
A
A
V
G
M
T
G
Y
V
L
GN
D
E
L
V
E
I
S
L
MGLDKTGKAG
F
M
K
Q
L
D
K
LFSPDGYYTEG
P
Y
Y
Q
R
Y
A
L
M
P
F
I
W
F
A
K
A
I
E
T
N
EPERKIFEYRNN
I
L
L
K
A
V
Y
T
T
I
D
L
SYAGYFFPINDALKDKGIDT
V
E
L
V
H
A
L
A
I
V
Y
S
I
TGD
N
T
L
L
D
I
A
Q
E
Q
GRISLT
G
D
G
L
K
V
A
K
A
V
G
E
GL
T
Q
P
Y
N
Y
R
S
I
L
L
G
D
G
ADGDQ
G
A
L
S
I
H
R
L
G
E
G
HN
H
M
A
L
V
A
KNTSQGMGHGHFDKL
N
W
L
L
Y
D
NGNEIVTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHN
T
L
V
V
NEQSHFYGD
V
T
T
A
D
L
H
H
P
E
V
L
S
F
Y
S
G
ED
Y
Q
L
S
S
A
K
E
ANAYDG
V
E
F
V
R
S
M
L
L
V
N
V
PSLE
H
P
I
V
V
D
V
L
N
V
S
A
D
K
A
S
T
F
D
L
P
L
Y
F
N
G
QIIDFS
F
K
V
K
DNKNVMKMLGKRNGYQHLWLR
N
T
A
P
V
G
D
A
S
E
R
A
T
W
I
L
DD
R
F
Y
S
Y
A
F
V
T
S
T
PSKK
Q
N
V
L
I
A
E
L
G
ANDPNYNL
R
Q
Q
Q
V
L
I
R
R
V
E
KAK
Q
A
S
F
V
S
V
L
E
P
H
G
K
Y
D
GSLETTSGAYSNVK
S
V
K
H
V
S
E
NG
K
D
V
V
V
V
D
L
KDG
S
N
V
V
V
A
L
SYNANSE
Q
V
H
K
V
N
AG
E
E
A
I
E
W
K
G
F
S
S
V
V
V
14
PsiBlast_PDB
48.88
26%
-49
- C1 -
3QMZ
-
DYHC_YEAST
A:
[3593-3641]
-----------------------------------------------------------------------------------------------------
E
A
M
N
-
I
E
K
K
L
S
E
S
-----
E
E
F
F
P
Q
F
D
N
L
V
E
E
Y
------
S
I
I
G
K
H
S
V
K
I
F
S
M
L
E
K
F
G
Q
F
H
W
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
42.52
16%
-8
- C1 -
3EFG
1
SLYX_XANCP
A:
[10-53]
---------------------------------------------------------------------------------------------------
Q
E
L
E
A
R
-
L
V
E
L
E
T
R
L
-----
S
F
Q
E
Q
A
L
T
E
L
S
E
A
L
------
A
D
A
R
L
T
G
A
R
N
A
E
L
I
R
H
L
L
E
D
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
40.75
37%
-42
- C1 -
2J68
-
BDLP_NOSP7
A:
[361-387]
----------------------------------------------------------------------------------------------------------
V
N
E
L
K
K
R
I
-----
D
S
V
E
P
E
F
N
K
L
T
G
I
R
------
D
E
F
Q
K
E
I
I
N
T
R
D
T
Q
A
R
T
I
S
E
S
F
R
S
Y
V
L
N
L
G
N
T
F
E
N
D
F
L
R
Y
Q
P
E
L
N
L
F
D
--
F
L
S
S
G
K
R
E
A
F
N
A
A
L
Q
K
A
F
E
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
40.69
37%
-42
- C1 -
2W6D
-
BDLP_NOSP7
A:
[361-387]
----------------------------------------------------------------------------------------------------------
V
N
E
L
K
K
R
I
-----
D
S
V
E
P
E
F
N
K
L
T
G
I
R
------
D
E
F
Q
K
E
I
I
N
T
R
D
T
Q
A
R
T
I
S
E
S
F
R
S
Y
V
L
N
L
G
N
T
F
E
N
D
F
L
R
Y
Q
P
E
L
N
L
F
D
--
F
L
S
S
G
K
R
E
A
F
N
A
A
L
Q
K
A
F
E
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
40.49
37%
-53
- C1 -
2J69
-
BDLP_NOSP7
A:
[361-387]
----------------------------------------------------------------------------------------------------------
V
N
E
L
K
K
R
I
-----
D
S
V
E
P
E
F
N
K
L
T
G
I
R
------
D
E
F
Q
K
E
I
I
N
T
R
D
T
Q
A
R
T
I
S
E
S
F
R
S
Y
V
L
N
L
G
N
T
F
E
N
D
F
L
R
Y
Q
P
E
L
N
L
F
D
--
F
L
S
S
G
K
R
E
A
F
N
A
A
L
Q
K
A
F
E
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
39.11
32%
-19
- C1 -
1URQ
-
STXB5_RAT
A:
[1070-1100]
------------------------------------------------------------------------------------------------------
R
L
A
-
L
D
E
R
G
Q
K
L
-----
S
D
L
E
E
R
T
A
A
M
M
S
S
A
------
D
S
F
S
K
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
38.64
31%
-42
- C1 -
3QDK
-
ARAB_BACHD
A:
[499-539]
----------------------------------------------------------------------------------------------------------
I
E
E
A
A
K
K
M
G
R
V
K
D
E
T
F
K
P
----
I
P
E
H
V
------
A
I
Y
E
K
L
Y
Q
E
Y
V
T
L
H
D
Y
F
G
R
G
A
N
D
V
M
K
R
L
K
A
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------