@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03500: (2016-06-06 )
MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWREK
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-----...10........20..--.-------.....30........-----------40......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNR
S
G
K
-----
H
L
I
S
S
I
I
LYPRPSG
E
C
I
--
S
-------
S
ISLDKQTQATTS
P
L
-----------
Y
-
F
C
W
REK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
77.29
30%
-91
- C8 -
2B9K
-
BLCI_BACIU
A:
[1-47]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
K
L
V
Q
S
P
N
G
N
F
A
--
A
-------
S
F
V
L
D
G
T
K
W
I
F
K
S
K
Y
YDSSKG
Y
W
V
G
I
Y
-
E
V
W
D
R
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
68.16
39%
-48
- C5 -
2VIU
5
?
A:
[9-328]
S
T
A
T
L
C
L
G
H
H
A
V
P
N
G
T
L
V
K
T
ITDD
Q
I
E
V
T
N
A
T
E
LVQSSSTG
K
I
C
NNPHRILDGIDCT
L
I
D
A
L
L
GDPHCDVFQNETWD
L
F
V
E
R
SKAFSNCY
P
Y
D
V
PD
Y
A
S
L
R
S
L
V
A
S
S
GTL
E
F
I
T
E
GFTWTGVIQN
G
G
S
NACKRGP
G
S
G
F
FSR
L
N
W
L
T
K
SGSTYPV
L
N
V
T
M
P
NNDN
F
D
K
L
Y
I
W
G
I
H
H
P
ST
N
Q
E
Q
T
S
L
YVQA
S
G
R
V
T
V
S
T
RR
S
Q
Q
T
I
I
P
N
I
G
S
R
P
WVRGLS
S
R
I
S
I
Y
W
T
I
V
K
PG
D
V
L
V
I
N
S
NGNLIAPR
G
Y
F
K
M
R
T
G
K
--------
S
S
I
M
R
S
D
A
P
I
D
T
C
I
--
S
E
C
I
T
PNG
S
I
P
N
D
K
P
F
Q
N
V
N
K
I
T
-----------
Y
G
A
C
P
K
Y
V
KQN
T
L
K
L
A
TG
M
R
N
V
P
E
KQT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
63.97
6%
-106
- C11 -
2PTF
2
Y863_METTH
A:
[17-222]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
Y
T
H
F
-----
K
D
L
Q
A
L
E
M
-
E
R
G
R
L
Y
E
T
--
I
-------
V
V
T
W
D
D
S
M
V
G
N
A
A
P
I
-----------
G
-
V
L
C
T
G
D
D
T
V
T
L
Y
L
Y
Q
GT
R
T
V
E
N
V
L
N
NG
R
F
T
V
N
V
T
LD
P
L
I
F
T
D
S
T
L
GDLEEDM
F
S
H
Y
RD
F
L
H
L
RGAD
A
F
F
T
A
E
V
V
S
V
K
K
L
V
K
R
DRE
S
E
L
H
V
V
K
A
R
A
G
D
V
M
R
A
ESFRMALNR
G
I
Y
A
V
I
E
S
L
I
A
Y
T
R
AP
L
V
L
R
E
R
I
A
E
M
N
R
V
A
R
K
VGG
P
R
E
K
E
A
M
R
R
I
I
Q
A
L
E
S---------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
60.55
26%
-17
* C12 *
4MR0
7
PFBA_STRR6
A:
[114-571]
---------------------------------------------TALSVKDYGAVGDGIHDD
R
Q
A
I
Q
D
A
I
D
A
A
A
Q
GLGGG
N
V
Y
F
P
E
G
T
Y
L
V
K
E
I
V
F
L
K
S
H
T
H
L
E
L
N
EK
A
T
I
L
N
GINIKNHPSIVFMT
G
L
F
T
D
DGA
Q
V
E
W
G
P
TED
I
S
Y
S
G
G
T
I
DMNGALNEEGTKAKNLPLIN
S
S
G
A
F
AIGNSNN
V
T
I
K
N
V
T
F
K
DSYQGHA
I
Q
I
A
GSKN
V
L
V
D
N
S
R
F
L
G
Q
A
L
P
KTMK
D
G
Q
I
I
S
KES
I
Q
I
E
P
LTRKGFPYA
L
N
D
D
G
K
K
S
E
NV
T
I
Q
N
S
Y
F
G
K
S
D
K
S
G
E
L
V
--
T
-------
A
I
G
T
H
Y
Q
T
L
S
T
Q
N
P
S
-----------
N
-
I
K
I
L
N
N
HFDNMMYAG
V
R
F
T
GFTDVLIKG
N
R
F
D
K
K
V
KGESVHYRESGAALVNAYSYKNTKDLLDLNKQ
V
V
I
A
E
N
I
F
N
I
ADPKTKAIRVAKDSAEYLGKVSD
I
T
V
T
K
N
V
I
N
N
NSKETEQPN
I
E
L
L
RVSDNLVVSE
N
S
I
F
G
GKEG
I
V
I
E
DSK
G
K
I
T
V
L
N
N
Q
F
Y
NLSGKY
I
S
F
I
K
S
N
A
N
G
K
E
P
VISD
G
N
F
N
I
V
T
E
NG
L
Y
K
I
V
T
N
NLSDKN------------------------------------------------------------------------------------------------------------
17
Fugue
56.78
26%
-15
- C14 -
1DKG
-
DNAK_ECOLI
D:
[3-383]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIIGIDLGTTNSCVAIMDGTTPRVL
E
N
A
E
G
D
-----
R
T
T
P
S
I
I
A
Y
T
Q
D
-----GE
T
-------
L
V
G
Q
P
A
K
R
Q
A
V
T
N
P
Q
-----------
N
-
T
L
F
A
I
K
RLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKTGNRTIAVYDLGGGTFDISIIEIDEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT
4
HHSearch
52.83
22%
-150
- C13 -
2R2Y
-
ADRM1_MOUSE
A:
[37-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
T
P
D
K
R
K
G
L
V
--
Y
-------
I
Q
Q
T
D
------
D
S
L
I
-----------
H
-
F
C
W
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
49.11
20%
13
- C12 -
3SSB
1
IMPI_GALME
C:
[6-40]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
C
N
G
G
-----
H
E
------
Y
Y
E
C
G
G
A
C
D
--
N
-------
V
C
A
D
L
H
I
Q
N
K
T
N
C
P
I
-----------
I
-
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
48.72
21%
-165
- C13 -
2KR0
-
ADRM1_HUMAN
A:
[36-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
V
T
P
D
K
R
K
G
L
V
--
Y
-------
I
Q
Q
T
D
------
D
S
L
I
-----------
H
-
F
C
W
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
46.22
34%
-25
- C9 -
1EWS
-
RK1_RABIT
A:
[1-32]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
C
S
C
K
-----
K
Y
-------------
C
D
--
P
-------
W
E
V
I
D
G
S
C
G
L
F
N
S
K
------------
Y
-
I
C
C
R
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
42.05
23%
24
- C10 -
1IWF
-
ATP4A_PIG
A:
[1-34]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
K
A
E
N
-----
Y
E
L
Y
Q
V
E
L
G
P
G
P
S
G
D
M
A
--
A
-------
K
M
S
K
K
K
A
G
R
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
41.41
20%
-27
- C13 -
4CR2
-
RPN13_YEAST
X:
[23-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
T
P
I
P
V
Q
G
E
I
--
E
-------
I
K
P
N
E
E
E
---
E
L
G
F
W
-----------
D
-
F
E
W
R
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.40
29%
-128
* C13 *
4GO6
1
HCFC1_HUMAN
A:
[16-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
A
N
T
N
S
L
-----------
E
-
V
S
W
G
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
34.82
47%
49
- C14 -
2MC7
-
?
A:
[1-15]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
R
S
P
D
-----
K
I
I
A
L
I
F
L
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
33.87
26%
-52
* C14 *
2MC7
-
?
A:
[1-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
R
S
P
D
-----
K
I
I
A
L
I
F
L
L
I
S
L
L
V
L
C
L
--
A
-------
L
W
Q
I
V
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
32.59
47%
-24
- C6 -
2KT9
-
RRP3_SYNY3
A:
[23-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
V
D
Q
I
V
G
K
G
T
S
P
L
T
S
---------
Y
-
F
F
W
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
30.38
30%
-
- C2 -
4J2L
1
CIC_HUMAN
C:
[10-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
V
A
V
F
P
W
H
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
27.99
30%
-
- C3 -
4J2J
1
CIC_HUMAN
D:
[3-12]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
V
A
V
F
P
W
H
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
27.23
57%
-
- C1 -
1D02
-
T2MU_MYCSP
A:
[176-182]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-----------
Y
-
F
M
W
R
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
24.67
18%
58
- C4 -
1C0A
1
SYD_ECOLI
A:
[545-561]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-----
D
N
I
R
D
V
I
A
F
P
K
T
T
A
A
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
21.66
5%
-39
- C7 -
2QRU
7
?
A:
[3-274]
----------------------------------------------------------------------------------------------------------------------------------------AH
L
K
N
N
Q
T
L
ANG
A
T
V
T
I
Y
P
T
TTEP
T
N
Y
V
V
Y
L
H
G
G
GMIYGTKSDLP
E
E
L
K
E
L
F
T
S
N
G
Y
T
V
L
A
L
D
Y
L
L
A
PNTK
I
D
H
I
L
R
T
L
T
E
T
F
Q
L
L
N
E
E
IIQN
Q
S
F
G
L
C
G
R
S
A
G
G
Y
L
M
L
Q
L
T
K
Q
L
Q
T
L
N
L
-----
T
P
Q
F
L
V
N
F
Y
G
------
Y
--
T
-------
D
L
E
F
I
K
E
P
R
K
L
L
K
Q
A
-----------
I
-
S
A
K
E
I
A
AIDQTKPVWDDPFLSR
Y
L
L
Y
H
Y
S
I
Q
Q
AL
L
P
H
F
Y
GLPENGDWSAYALS
D
E
T
L
K
T
F
P
P
C
F
S
T
A
S
SSDEEVPF
R
Y
S
K
K
I
G
R
TIPE
S
T
F
K
A
V
Y
YLEHDFLKQTKD
P
S
V
I
T
L
F
E
Q
L
D
S
W
L
K
E
R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------