@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03740: (2016-06-06 )
MNFIKRAFWNMKAKKGKTLLQLFVFTVICVFVLSGLAIQSAAQKSSELARQELGGSVTLQVDRQKQMEKQQDSGEKRSFESTPIKVSDANKLAALDHVKSYNYTTSASANAGNFDAIESSSSSDSSSSSSSSNAKNSQGGGQGGPQMVQADLSIEGVISTALVDDFSDGDSKITDGRAITKSDVGKKVTVINETLAEENDLSVGDSITIESATDEDTTVKLKIVGIYKTTSSGDDQAQNFSFLNPYNKLYTPYTATAALKGDDYKNTIDSAVYYMDDAKNMDTFVKAAKKTSIDFDTYTLNTNDQLYQQMVGPIENVASFSKNVVYLVSVAGAVILGLIVMMSIRERKYEMGVLMAIGEKRWKLIGQFLTEILIVAVIAIGLASVTGNLVANQLGNQLLSQQISSSTDSTQTASGQMPGGGGGMGGKMFGHSSSNVDVIDSLNVAVSMNDMLILGGIGILIAIIATLLPSISVLRLHPKTILTKQE
Atome Classification :
(20 SA)
.........10........20--.........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.--.--..--...190......---.-200-.---....-....210.......220.......230.......240.......250......-.260..-.....270.......280.......290.......300.......310.------......320..-----.....330..---.....340.......350.......360.......370.......380.......390....--------...400.......410.....--..420.......430.......440.......450.......460.......470.......480....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
N
F
I
K
R
A
F
W
NMKAKK
G
K
T
L
L
---
Q
L
F
V
F
T
V
I
C
V
F
V
LS
G
L
A
I
Q
S
A
A
Q
K
S
S
E
L
A
R
Q
ELG
G
S
V
T
L
Q
V
D
R
Q
K
Q
M
E
K
QQDSGEKRSFEST
P
I
K
VSDAN
K
L
A
A
L
D
H
VKSYNYTTSASANAGNFDAIESSSSSDSSSSSSSSNAKNSQGGGQGGP
Q
M
V
Q
ADLSIE
G
V
I
S
T
A
L
VDDFSDGDSKITDG
R
A
I
T
K
S
D--V--G
K
--
K
V
T
V
I
N
E
TLAEE---N-D---L---SVG
D
-
S
I
T
I
ESATDED
T
T
V
K
L
K
I
V
G
I
Y
K
TTSSGDDQAQNFSFLN
P
Y
N
K
LYTPYT
A
T
A
A-LKGDDY-
K
N
T
I
D
S
A
V
Y
Y
MDDAK
N
M
D
T
F
V
K
A
A
KKTSID
F
D
T
Y
T
LNT
N
D
Q
L
Y
Q
Q
M
V
G
P
------
I
E
N
V
A
S
FSKN
V
-----
V
Y
L
V
S
V
A
G
A
V
---
I
L
G
L
I
V
M
M
S
I
R
E
R
K
Y
EMG
V
L
M
A
I
G
E
K
R
W
K
L
I
G
Q
F
L
T
E
I
L
I
V
A
V
I
A
I
G
L
A
S
V
T
G
N
L
V
A
N
Q
L
G
N
--------
Q
L
L
S
Q
Q
I
SSSTDSTQTASGQM--PGGGGGMGGKMFGHSSSN
V
D
V
I
DSL
N
V
A
V
SMN
D
M
L
I
LG
G
I
G
I
L
I
A
I
I
A
T
L
LPS
I
S
V
L
R
LH
P
K
T
ILTKQE
24
Fugue
64.38
18%
-64
- C1 -
4H2Q
7
?
A:
[10-379]
-------------
K
T
R
R
A
E
V
A
G
G
G
F
A
G
L
T
A
A
I
A
L
K
Q
N
G
W
D
V
R
L
H
-
E
K
S
S
E
L
--
R
A
F
G
A
G
I
Y
L
W
H
N
G
L
R
V
L
E
G
-----------------------------------------
L
G
A
L
D
D
V
L
Q
G
S
H
T
P
P
T
Y
E
T
W
M
H
N
K
S
V
S
K
E
T
F
N
G
L
P
W
R
I
M
T
----
R
S
H
L
H
D
A
L
V
N
R
A
R
A
L
G
V
D
I
S
V
N
S
E
A
V
A
A
D
--
P
--
V
G
--
R
L
T
L
Q
T
G
E
V
L
E
----
A
-
D
---
L
---
I
V
G
---------
A
D
G
V
G
S
K
V
R
D
S
I
G
F
K
Q
D
R
W
V
S
K
D
G
L
I
R
L
I
V
P
----------
R
M
K
K
E
-
L
G
H
G
E
W
-
D
N
T
I
D
M
W
N
F
W
P
R
V
Q
R
I
L
Y
S
P
C
N
----------------
E
N
E
L
Y
L
G
L
M
A
P
------
A
A
D
P
R
G
S
S
V
P
I
D
L
E
V
W
V
E
M
F
P
F
L
E
P
C
---
L
I
E
A
A
K
L
K
T
A
R
Y
D
K
Y
E
T
T
K
L
D
S
W
T
R
G
K
V
A
L
V
G
D
A
A
H
A
M
C
P
A
L
A
Q
G
A
G
C
A
M
V
N
A
F
S
L
S
Q
D
L
E
E
GSS
V
E
D
A
L
V
A
W
E
T
R
I
R
P
I
T
D
R
C
Q
A
L
S
G
D
Y
--
A
A
N
R
S
L
S
K
G
N
M
F
T
P
A
A
L
E
A
A
R
Y
D
P
L
R
R
V
Y
S
W
P
Q
------------------------------------
15
Fugue
43.29
16%
-30
* C5 *
3FTJ
-
MACB_AGGAC
A:
[307-528]
------------------------------------------------------------------------
Q
K
I
L
E
N
I
R
G
I
G
T
N
T
M
T
I
F
N
G
N
G
F
G
D
R
R
S
R
H
I
Q
N
L
K
I
S
D
A
N
T
L
S
K
Q
S
Y
I
Q
S
V
T
P
N
T
S
S
S
G
I
L
V
V
G
N
K
S
F
T
S
------------
A
N
L
Y
G
I
G
E
----
Q
Y
F
D
V
E
G
L
K
L
K
Q
G
R
L
L
T
E
D
D
--
V
--
D
Q
SN
Q
V
V
V
L
D
E
S
A
K
K
A
I
FA
N
-
E
---
N
---
P
L
G
K
-
T
V
I
F
N
K
-------
R
P
F
R
V
I
G
V
V
S
D
Q
S
---------------
L
N
L
Y
S
P
Y
S
T
V
L
N
K
I
T
G
G
S
R
-
I
G
S
I
T
V
K
I
S
D
D
V
N
S
T
V
A
E
K
S
L
T
E
L
L
K
S
L
H
G
K
K
D
F
F
I
M
N
S
D
T
I
K
Q
T
I
E
N
T
------
T
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
41.98
20%
-68
- C5 -
5F9Q
-
?
A:
[91-198]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
D
V
Q
D
G
R
T
F
T
D
N
D
--
F
L
S
G
K
--
R
A
G
I
I
S
K
K
M
A
E
K
---
L
-
F
GKT
S
---
P
L
G
K
-
I
V
W
A
G
-------
G
Q
P
V
E
V
I
G
V
L
K
E
---------------
G
L
S
E
M
Y
V
P
F
N
M
L
K
T
-
S
F
G
T
----
N
D
Y
S
N
V
S
V
Q
T
E
S
A
D
Q
I
K
S
T
G
K
E
A
A
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
41.51
26%
8
- C4 -
3H5A
-
?
A:
[83-199]
-------------------------------------------------------------------------------------------------------
Y
N
N
S
T
E
N
-
R
Y
S
R
N
F
L
H
Y
Q
S
Y
G
A
N
P
V
L
V
Q
D
K
L
K
N
A
K
V
V
I
L
G
C
G
G
I
G
N
H
V
S
V
I
L
A
T
S
G
I
G
E
I
I
L
I
D
N
D
Q
I
E
N
T
N
L
T
R
Q
V
L
F
S
E
D
D
--
V
--
G
K
N-
K
T
E
V
I
K
R
E
L
L
K
R
---
N
S
E
---
I
---
S
V
S
E
I
A
L
N
I
N
D
Y
T
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
41.03
26%
11
- C4 -
3H9J
1
?
A:
[86-211]
-------------------------------------------------------------------------------------------------------
Y
N
N
S
T
E
N
N
R
Y
S
R
N
F
L
H
Y
Q
S
Y
G
A
N
P
V
L
V
Q
D
K
L
K
N
A
K
V
V
I
L
G
C
G
G
I
G
N
H
V
S
V
I
L
A
T
S
G
I
G
E
I
I
L
I
D
N
D
Q
I
E
N
T
N
L
T
R
Q
V
L
F
S
E
D
D
--
V
--
G
K
N-
K
T
E
V
I
K
R
E
L
L
K
R
---
N
S
E
---
I
---
S
V
S
E
I
A
L
N
I
N
D
Y
T
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.91
26%
7
- C4 -
3H5N
2
?
A:
[86-211]
-------------------------------------------------------------------------------------------------------
Y
N
N
S
T
E
N
N
R
Y
S
R
N
F
L
H
Y
Q
S
Y
G
A
N
P
V
L
V
Q
D
K
L
K
N
A
K
V
V
I
L
G
C
G
G
I
G
N
H
V
S
V
I
L
A
T
S
G
I
G
E
I
I
L
I
D
N
D
Q
I
E
N
T
N
L
T
R
Q
V
L
F
S
E
D
D
--
V
--
G
K
N-
K
T
E
V
I
K
R
E
L
L
K
R
---
N
S
E
---
I
---
S
V
S
E
I
A
L
N
I
N
D
Y
T
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
40.71
26%
0
- C4 -
3H9G
2
?
A:
[86-202]
-------------------------------------------------------------------------------------------------------
Y
N
N
S
--
N
N
R
Y
S
R
N
F
L
H
Y
Q
S
Y
G
A
N
P
V
L
V
Q
D
K
L
K
N
A
K
V
V
I
L
G
C
G
G
I
G
N
H
V
S
V
I
L
A
T
S
G
I
G
E
I
I
L
I
D
N
D
Q
I
E
N
T
N
L
T
R
Q
V
L
F
S
E
D
D
--
V
--
G
K
N-
K
T
E
V
I
K
R
E
L
L
K
R
---
N
S
E
---
I
---
S
V
S
E
I
A
L
N
I
N
D
Y
T
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.66
26%
11
- C4 -
3H5R
1
?
A:
[86-210]
-------------------------------------------------------------------------------------------------------
Y
N
N
S
T
E
N
N
R
Y
S
R
N
F
L
H
Y
Q
S
Y
G
A
N
P
V
L
V
Q
D
K
L
K
N
A
K
V
V
I
L
G
C
G
G
I
G
N
H
V
S
V
I
L
A
T
S
G
I
G
E
I
I
L
I
D
N
D
Q
I
E
N
T
N
L
T
R
Q
V
L
F
S
E
D
D
--
V
--
G
K
N-
K
T
E
V
I
K
R
E
L
L
K
R
---
N
S
E
---
I
---
S
V
S
E
I
A
L
N
I
N
D
Y
T
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
38.89
18%
-77
- C5 -
3FTJ
-
MACB_AGGAC
A:
[376-500]
---------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
N
L
Y
G
I
G
E
Q
-
Y
F
---
D
V
E
G
L
K
L
K
Q
G
R
L
L
T
E
D
D
V
D
Q
--
S
N
--
Q
V
V
V
L
D
E
S
A
K
K
A
---
I
-
F
---
A
NEN
P
L
G
K
-
T
V
I
F
N
-------
K
R
P
F
R
V
I
G
V
V
S
D
Q
---------------
S
L
N
L
Y
S
P
Y
S
T
V
L
N
-
K
I
T
G
---
G
S
R
I
G
S
I
T
V
K
I
S
D
D
V
N
S
T
V
A
E
K
S
L
T
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
34.70
19%
-254
- C4 -
1YFB
-
ABRB_BACSU
A:
[15-40]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
G
R
V
V
I
P
I
E
L
R
R
T
---
L
-
G
---
I
---
A
E
K
D
-
A
L
E
I
Y
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
34.21
12%
-318
- C4 -
2L66
-
?
A:
[12-37]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
Y
Q
V
T
I
P
A
K
V
R
Q
K
---
F
-
Q
---
I
---
K
E
G
D
-
L
V
K
V
T
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
34.12
34%
-106
- C2 -
4R5O
1
?
A:
[285-355]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
N
V
Y
T
L
E
S
A
D
N
G
C
N
I
V
K
I
K
N
----
D
F
T
L
E
K
V
F
A
N
---
F
Q
P
A
K
G
P
YHSSPT
I
G
M
V
A
S
E
T
E
N
I
-----
I
Y
L
V
S
T
D
G
A
I
Y
K
Y
I
L
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
33.24
13%
-90
- C5 -
3IS6
1
?
A:
[92-201]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
E
L
I
A
G
V
R
D
S
A
L
R
-----
D
N
--
M
T
C
L
I
S
E
S
L
A
R
K
---
M
-
G
G--
D
---
V
L
G
K
-
R
L
R
P
A
E
S
---
K
S
D
R
A
I
T
I
G
G
V
F
E
D
L
P
H
N
S
---------
S
I
Q
A
D
M
L
L
P
I
T
W
M
P
A
-
E
S
L
N
N
W
I
G
N
D
R
Y
I
A
Y
V
R
L
R
P
G
V
S
P
E
S
L
D
E
A
L
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
31.62
16%
7
* C4 *
4C1A
1
?
A:
[1-36]
------------------------------------------
G
P
A
M
E
A
L
E
L
E
L
E
E
V
E
S
Q
I
R
A
L
V
V
R
R
S
R
L
R
E
R
L
L
A
V
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
29.39
25%
-64
- C4 -
4LRT
1
?
A:
[24-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
A
M
A
H
--------
Q
F
T
E
E
Q
V
R
A
T
V
H
A
L
D
A
A
G
V
E
V
I
E
V
S
H
G
D
G
L
G
G
S
S
F
N
Y
G
F
S
A
V
D
E
I
D
L
V
A
A
A
V
---
D
E
A
V
N
A
K
I
A
V
L
------
L
L
P
G
V
G
T
V
R
-----------
7
PsiBlast_PDB
29.24
25%
-57
- C4 -
4LRS
4
?
A:
[24-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
A
M
A
H
--------
Q
F
T
E
E
Q
V
R
A
T
V
H
A
L
D
A
A
G
V
E
V
I
E
V
S
H
G
D
G
L
G
G
S
S
F
N
Y
G
F
S
A
V
D
E
I
D
L
V
A
A
A
V
---
D
E
A
V
N
A
K
I
A
V
L
------
L
L
P
G
V
G
T
V
R
-----------
20
Fugue
26.47
22%
-18
- C4 -
2KES
-
SNCAP_HUMAN
A:
[510-557]
--------------------------------
G
S
V
E
T
C
M
S
L
A
S
Q
V
V
K
L
T
K
Q
L
K
E
Q
T
V
E
R
V
T
L
Q
N
Q
L
Q
Q
F
L
E
A
Q
K
S
E
G
K
S
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
22.42
10%
-35
- C4 -
1Y74
-
LIN7B_MOUSE
A:
[17-73]
--------------------------------------
L
G
L
E
R
D
V
S
R
A
V
E
L
L
E
R
L
Q
R
S
G
-
E
L
P
P
Q
K
L
Q
A
L
Q
R
V
L
Q
S
R
F
C
S
A
I
R
E
V
Y
E
Q
L
Y
D
T
L
D
I
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
21.22
14%
157
- C4 -
4JPN
-
H_BPPHS
A:
[144-218]
----------------------------------------
V
D
A
G
F
E
N
Q
K
E
L
T
K
M
Q
L
D
N
Q
K
E
I
A
E
M
Q
N
E
T
Q
K
E
I
A
G
I
Q
S
A
T
S
R
Q
N
T
K
D
Q
V
Y
A
Q
N
E
M
L
A
Y
Q
Q
K
E
S
T
A
R
V
A
S
I
M
E
N
T
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
18.27
26%
4
- C3 -
3CP7
1
?
A:
[124-172]
---------------------------------------------------------------------------------------------------
Y
Y
S
A
Y
G
Y
P
A
A
A
P
F
N
G
Q
E
L
H
S
C
H
G
T
A
T
N
D
P
M
G
S
S
T
Q
G
I
P
C
N
M
T
G
G
S
S
G
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------