@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04039: (2016-06-07 )
MTEKKQQNKPNENPEHNDLTDPIPNEELKENMNDEKHKRQQRDNSQSERDYDTK
Atome Classification :
(16 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..-...--...20........30.........40........50...---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTEKKQQNKPNEN-PEH--NDLTDPIP
N
E
E
L
K
E
-NM
N
D
E
K
H
K
R
Q
QRDNSQSERDYDTK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
62.31
24%
39
- C3 -
3U1K
2
PNPT1_HUMAN
A:
[4-627]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
S
A
V
A
V
D
LGN
R
K
L
E
I
S
S
GKLARFAD
G
S
A
V
V
Q
S
GD
T
A
V
M
V
T
A
V
S
K
TKPSPSQFMP
L
V
V
D
Y
R
Q
KAAAAGRIPTNYLTS
D
K
E
I
L
T
S
R
I
I
D
R
S
IRPLFPAGYF
Y
D
T
Q
V
L
C
N
LLAVDGVNEP
D
V
L
A
I
N
G
A
S
V
A
L
S
L
SDIPWNGP
V
G
A
V
R
I
G
I
I
DG
E
Y
V
V
NPT
R
K
E
M
S
S
ST
L
N
L
V
V
A
G
A
P
KSQIV
M
L
E
A
S
A
ENIL
Q
Q
D
F
C
H
A
I
K
V
G
V
K
Y
T
Q
Q
I
I
Q
G
I
Q
Q
L
V
K
E
T
G
V
T
K
R
T
P
Q
K
L
F
T
P
S
-
P
E
I
--
V
K
Y
T
H
K
L
A
M
E
R
L
Y
A
-
V
F
T
D
Y
E
H
D
K
V
S
R
D
E
A
V
N
K
I
R
L
D
T
E
E
Q
L
K
E
K
F
PEAD
P
Y
E
I
I
E
S
F
N
V
V
A
K
E
V
F
R
S
I
V
L
N
EYKRCDGRDL
T
S
L
R
N
V
S
C
E
V
DMFKTLH
G
S
A
L
F
Q
R
GQ
T
Q
V
L
C
T
V
T
F
D
S
L
E
S
G
I
KSD
Q
V
I
T
A
I
NGIKDKN
F
M
L
H
Y
E
FPPYATN
E
I
G
K
VTGLN
R
R
E
L
G
H
G
A
L
A
E
K
A
L
YPVIPRDFP
F
T
I
R
V
T
S
E
V
LESNGS
S
S
M
A
S
A
C
G
G
S
L
A
L
M
D
S
GVPIS
S
A
V
A
G
V
A
I
G
L
V
T
K
T
D
PEKGEIE
D
Y
R
L
L
T
DIL
G
I
E
D
Y
N
GDMD
F
K
I
A
G
T
NK
G
I
T
A
LQADIKLPGIP
I
K
I
V
M
E
A
I
Q
Q
A
S
V
A
K
K
E
I
L
Q
I
M
N
K
T
ISKPRASRKEN
G
P
V
V
E
T
V
Q
V
P
LSK
R
A
K
F
V
GPGG
Y
N
L
K
K
L
Q
A
E
TG
V
T
I
S
Q
VDEE
T
F
S
V
F
A
PT
P
S
A
M
H
E
A
R
D
F
I
T
E
5
HHSearch
54.83
50%
-221
- C4 -
4BOB
-
?
A:
[153-164]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
I
P
L
E
V
L
K
K
-
N
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
54.21
23%
154
- C3 -
4LQK
-
A46_VACCW
A:
[4-135]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
F
K
L
I
L
A
E
Y
I
R
H
RN
T
I
S
G
N
I
Y
S
A
L
M
T
L
D
D
L
A
I
K
Q
YGD
I
D
L
L
F
N
EKLKVDSDS
G
L
F
D
F
V
N
F
V
KDMICCD
S
R
I
V
V
A
L
S
S
L
V
S
K
H
W
E
L
T
N
K
K
Y
R
C
M
A
L
A
--
E
H
I
S
D
S
I
P
I
S
E
L
S
R
L
R
Y
N
L
S
K
Y
L
R
G
H
T
E
S
I
E
D
K
F
D
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
43.37
18%
-158
- C4 -
3USH
-
?
A:
[101-117]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
E
A
A
L
K
A
V
D
L
E
V
L
K
A
-
H
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
43.14
14%
144
- C3 -
1NG7
-
?
A:
[1-60]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGPL
Q
Y
K
D
L
K
I
D
I
K
T
S
P
-
P
P
E
C
I
N
D
L
L
Q
A
V
D
S
Q
E
V
R
D
-
Y
C
E
K
K
G
W
I
V
N
I
T
S
Q
V
Q
T
E
R
N
I
N
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
36.05
25%
-202
* C4 *
4IOH
-
?
A:
[103-118]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
--
A
S
A
L
E
Y
V
S
L
E
D
L
K
A
-
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
35.65
10%
107
- C3 -
2RMG
-
A:
[4-41]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
L
S
L
D
V
P
I
G
L
L
Q
I
-
L
L
E
Q
A
R
A
R
A
A
R
E
Q
A
T
T
N
A
R
I
L
A
R
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
34.85
20%
83
* C3 *
4NOM
-
LGMN_MOUSE
A:
[26-432]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDG
G
K
H
W
V
V
I
V
A
GSNGWYNY
R
H
Q
A
D
A
C
H
A
Y
Q
I
I
H
R
N
GIPDEQ
I
I
V
M
M
YDDIANSEENPTPGVVINRPNGTDVYKGVLKDYTGEDVT
P
E
N
F
L
A
V
L
R
GDAEAVKGKGSGKVLKSGPR
D
H
V
F
I
Y
F
T
D
H
G
A
TG
I
L
V
F
PN
D
D
L
H
V
K
D
L
N
K
T
I
R
Y
M
Y
E
H
KMYQ
K
M
V
F
Y
I
E
A
C
ESGSMMNHLPDDIN
V
Y
A
T
T
AANPK
E
S
S
Y
A
C
YYDEERGTYLGD
W
Y
S
V
N
W
M
E
D
S
D
V
EDLTKET
L
H
K
Q
Y
H
L
V
K
S
H
TNT
S
H
V
M
Q
Y
G
N
K
S
I
S
T
MKVMQF
Q
G
M
K
H
R
A
S
S
P
I
S
L
-
P
P
V
--
T
H
L
-
D
L
T
P
S
P
D
V
P
L
-
T
I
L
K
R
K
L
L
R
---
T
N
D
V
K
E
S
Q
N
L
I
G
Q
I
Q
Q
F
L
D
A
R
H
V
I
E
K
S
V
H
K
I
V
S
L
L
AGFG
E
T
A
E
R
H
L
SERTMLTA
H
D
C
Y
Q
E
A
V
T
H
F
R
T
HCFNWHSVTYEHALRY
L
Y
V
L
A
N
L
C
E
A
PYP
I
D
R
I
E
M
A
M
D
K
V
CL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
34.85
20%
48
- C3 -
1RMD
1
?
?:
[87-116]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
V
K
C
P
A
Q
D
C
N
E
-
E
V
S
L
E
K
Y
N
H
H
V
S
S
H
K
E
S
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
32.96
11%
56
- C3 -
4HNY
4
NAT1_YEAST
A:
[54-862]
V
D
S
L
A
L
K
G
L
D
L
Y
S
V
GE
K
D
D
A
A
S
Y
V
A
N
A
I
RAS
P
I
C
C
H
V
L
G
I
Y
M
R
N
T
KE
Y
K
E
S
I
K
W
F
T
A
A
L
N
N
GSTNKQ
I
Y
R
D
L
A
T
L
Q
S
Q
I
GD
F
K
N
A
L
V
S
R
K
K
Y
W
E
A
F
LGY
R
A
N
W
T
S
L
A
V
A
Q
D
V
N
GE
R
Q
Q
A
I
N
T
L
S
Q
F
E
K
L
A
EGKISDSE
K
Y
E
H
S
E
C
L
M
Y
K
N
D
I
M
Y
K
A
A
SDN
Q
D
K
L
Q
N
V
L
K
H
L
N
D
I
EPCVFD
K
F
G
L
L
E
R
K
A
T
I
Y
M
K
L
GQ
L
K
D
A
S
I
V
Y
R
T
L
I
K
R
N
PDN
F
K
Y
Y
K
L
L
E
V
S
L
GIQGD
N
K
L
K
K
A
L
Y
G
K
L
E
Q
F
YPRCEPPKFIPLTFLQD
K
E
E
L
S
K
K
L
R
E
Y
V
L
P
Q
L
E
R
GVPA
T
F
S
N
V
K
P
L
Y
Q
R
RKSKV
S
P
L
L
E
K
I
V
L
D
Y
L
S
G
LDPTQD
P
I
P
F
I
W
T
N
Y
Y
L
S
Q
H
F
L
F
L
KD
F
P
K
A
Q
E
Y
I
D
A
A
L
D
H
TPTL
V
E
F
Y
I
L
K
A
R
I
L
K
H
L
GL
M
D
T
A
A
G
I
L
E
E
G
R
Q
L
DLQD
R
F
I
N
C
K
T
V
K
Y
F
L
R
A
NN
I
D
K
A
V
E
V
A
S
L
FTKNDDSVNGIKDLHLVEA
S
W
F
I
V
E
Q
A
E
A
Y
Y
R
L
Y
L
D
R
K
K
K
L
D
D
L
A
SQ
I
A
N
D
I
K
E
N
Q
W
L
V
R
K
Y
K
G
L
A
L
K
R
F
N
A
I
P
K
F
Y
K
Q
F
E
D
D
Q
LDFH
S
Y
C
M
R
K
GT
P
R
A
Y
L
E
M
L
E
W
G
K
A
LYTK
P
M
Y
V
R
A
M
K
E
A
S
K
L
Y
F
Q
M
H
D
D
R
L
K
R
K
S
D
S
L
D
E
N
D
V
-
F
G
E
--
K
L
I
E
T
S
T
P
M
E
D
F
A
T
-
E
F
Y
N
N
Y
S
M
Q
V
R
E
D
E
R
D
Y
I
L
D
F
E
F
N
Y
R
I
GK
L
A
L
C
F
A
S
L
N
K
F
A
K
R
FGTTS
G
L
F
G
S
M
A
I
V
L
L
H
A
T
RPFDPIL
K
K
V
V
T
K
S
L
EKEYSEFD
W
L
N
F
Y
Q
E
KFGKND
I
N
G
L
L
F
L
Y
R
Y
R
DDVPIG
S
S
N
L
K
E
M
I
I
S
S
L
SPLE
P
H
S
Q
N
E
I
L
Q
Y
YLYPYDVPDY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
32.19
7%
95
- C3 -
3S5W
5
PVDA_PSEAE
A:
[29-448]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVHDLIGVGFG
P
S
N
I
A
L
A
I
A
L
Q
E
R
AQAQGALE
V
L
F
L
D
KQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYS
F
V
N
Y
L
H
K
H
DR
L
V
D
F
I
N
L
GTFYPC
R
M
E
F
N
D
Y
L
R
W
V
A
S
H
F
Q
EQSRYGEEVL
R
I
E
P
M
L
S
AGQVE
A
L
R
V
I
S
R
N
ADG
E
E
L
V
R
T
T
R
A
L
V
V
S
PGG
T
P
R
I
P
QVFRALKGDGRVFHHSQ
Y
L
E
H
M
AK
P
M
K
I
A
I
I
G
GG
Q
S
A
A
E
A
F
I
D
L
N
D
SYPS
V
Q
A
D
MILRASAL
K
P
A
D
DSPFVNEVFA
P
K
F
T
D
L
I
Y
S
R
E
H
A
E
R
E
R
L
L
-
R
E
Y
--
H
N
T
N
Y
S
V
V
D
T
D
L
I
E
-
R
I
Y
G
V
F
Y
R
Q
K
V
S
G
I
P
R
H
A
F
R
C
M
T
T
VE
R
A
T
A
T
AQGIELALRDAGSG
E
L
S
V
E
T
Y
DAVILAT
G
Y
E
R
QLRQLLEPLAEYLGEIGRDYRLQTDERCK
V
A
I
Y
A
Q
GFSQASHGLSDTLLSV
L
P
V
R
A
E
E
I
S
G
S
L
Y
Q
H
L
K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
31.23
14%
3
- C4 -
4XLG
-
B:
[29-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
R
--
I
Y
C
F
Q
P
I
T
M
N
D
L
I
N
-
K
L
R
N
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.94
6%
-168
- C4 -
2LQ3
-
?
A:
[103-119]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
K
S
A
L
R
Y
V
S
L
A
D
L
Q
A
-
H
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
28.14
14%
15
- C4 -
4ZDT
3
SLX4_SCHPO
B:
[26-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
--
I
L
T
Y
S
A
I
D
V
E
E
F
Q
L
-
W
L
K
R
K
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
28.07
22%
-44
- C1 -
2MNJ
-
A:
[11-19]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
V
D
E
L
P
E
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
12.14
11%
-
- C2 -
4AFI
-
AP3D1_HUMAN (first)
A:
[19-36]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
G
V
E
H
I
P
V
V
Q
I
D
L
-
S
V
P
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------