@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04370: (2016-06-07 )
MLSFLVSLVVAIVIGLIGSAIVGNRLPGGIFGSMIAGLIGAWIGHGLLGTWGPSLAGFAIFPAIIGAAIFVFLLGLIFRGLRKEA
Atome Classification :
(18 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--------------...10..-.....-.20......----..-30..--------......40...-..----------....-50-.--.-..------.----..-..60.-.......---70........80....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
S
F
L
V
--------------
S
L
V
V
A
I
V
-
I
G
L
I
G
-
S
A
I
VGNRLP----
G
G
-
I
F
G
S
--------
M
I
A
G
L
I
G
-
A
W
I
-GH----------
G
L
LG-T--W--G-PS------
L
----
A
G
-
F
A
I
F
P
-
A
I
I
G
A
A
I
---
F
V
F
L
L
G
L
I
F
R
G
L
RKEA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
70.65
22%
-232
- C5 -
1D8B
-
A:
[11-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELN
N
L
R
M
T
Y
E
R
--------------
L
R
E
L
S
L
N
-
L
G
N
R
M
-
V
P
P
V
G
N
F
M
P
----
D
S
-
I
L
K
K
--------
M
A
A
I
L
P
M
-
N
D
S
-
A
F
----------
A
T
L
G
-
T
--
V
--
E
-
D
K
------
Y
----
R
R
R
F
K
Y
F
K
-
A
T
I
A
D
L
S
---
K
K
----------
R
S
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
66.08
17%
-207
- C4 -
3EL6
2
A:
[26-300]
------------------------------------------------------------------------------------------------------------DVSALG
V
R
G
A
EHPLLL
A
A
V
D
VPGHG
G
A
V
F
T
G
R
L
S
TDEQPWLAEHVVGGRTLVP
G
S
V
L
V
D
L
A
L
A
A
G
E
D
V
GLPVLE
E
L
V
L
Q
RP
L
V
L
A
GA
G
A
L
L
R
M
S
V
G
A
P
D
ESG
R
R
T
I
D
V
H
A
A
EDVADLADAQWSQH
A
T
G
T
L
A
Q
G
V
A
A
G
P
RD
T
E
Q
W
P
P
--------------
E
D
A
V
R
I
P
-
L
D
D
H
Y
-
D
G
L
A
E
Q
-------
G
Y
-
E
Y
G
P
--------
S
F
Q
A
L
R
A
-
A
W
R
K
D
D
----------
S
V
Y
A
-
E
--
V
S
I
A
-
A
D
------
E
----
E
G
-
Y
A
F
H
P
-
V
L
L
D
A
V
A
---
Q
T
L
S
L
G
A
L
G
E
K
L
P
F
A
W
NTVTLHASGAT
S
V
R
V
V
A
T
P
A
G
AD
A
M
A
L
R
V
T
D
PAGHLVATVD
S
L
V
V
R------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
63.76
19%
-281
- C5 -
2NQ2
-
Y1471_HAEIN
A:
[262-330]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
G
L
I
-
I
P
H
L
S
-
R
M
L
V
G
A
N
H
Q
----
S
L
-
L
P
C
T
--------
M
L
V
G
A
T
Y
-
M
L
L
-
V
D
----------
N
V
A
R
-
S
--
L
--
S
-
D
A
------
E
----
I
P
-
I
S
I
L
T
-
A
L
I
G
A
P
L
---
F
G
V
L
V
Y
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
57.78
17%
-230
- C- -
2CO5
-
?
A:
[5-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
M
R
I
N
--------------
Y
Y
I
I
L
K
V
-
L
V
I
N
G
-
S
R
L
E
K
K
R
L
R
----
S
E
-
I
L
K
R
FD
I
D
I
S
D
G
V
L
Y
P
L
I
D
-
S
L
I
-
D
D
----------
K
I
L
R
-
E
--
E
--
E
-
A
P
-----------
D
G
-
K
V
L
F
L
-
T
E
K
G
M
K
E
---
F
E
E
L
H
E
F
F
K
K
I
V
C
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
56.44
25%
-194
- C2 -
2JTD
-
A:
[1-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEE
M
K
R
L
L
A
LSQEHKFPTVPTKS
E
L
A
V
E
I
L
E
K
G
Q
V
R
-
F
W
M
Q
A
E
K
L
S
----
S
N
-
A
K
V
S
--------
Y
I
F
N
E
K
E
-
I
F
E
-
G
P
K
Y
K
M
H
I
D
RNT
G
I
I
E
-
M
--
F
--
M
-
E
K
------
L
Q
DED
E
G
-
T
Y
T
F
Q
-
I
Q
D
G
K
A
T
G
H
S
T
L
V
L
I
G
D
V
Y
K
K
L
Q
K
E
A
E
F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
55.69
18%
-255
- C5 -
2QI9
-
BTUC_ECOLI
A:
[255-321]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
G
L
V
-
I
P
H
I
L
-
R
L
S
G
L
T
D
H
R
----
V
L
-
L
P
G
C
--------
A
L
A
G
A
S
A
-
L
L
L
-
A
D
----------
I
V
A
R
-
L
--
A
--
L
A
A
A
------
E
----
L
P
-
I
G
V
V
T
-
A
T
L
G
A
P
V
---
F
I
W
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
55.00
10%
-242
- C5 -
2K85
-
A:
[5-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
Q
I
--------------
A
T
A
K
D
K
Y
-
E
W
L
V
S
-
R
I
V
K
N
H
N
-------
E
-
N
W
L
S
--------
V
S
R
K
M
--------------------------------
Q
A
------
S
----
P
E
-
Y
Q
D
Y
V
-
Y
L
E
G
T
Q
K
---
A
K
K
L
F
L
Q
H
I
H
R
L
K
H
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
51.90
22%
-244
- C5 -
3C2W
1
BPHY_PSEAE
A:
[5-494]
TPVTLANCEDEPIHVPGAIQPH
G
A
L
V
T
L
R
ADGMVLAASENIQALLG
F
V
A
S
PG
S
Y
L
T
QEQVG
P
E
V
L
R
M
L
E
E
G
L
TGNGPWSN
S
V
E
T
R
IGEHLFD
V
I
G
H
S
Y
KE
V
F
Y
L
E
F
E
I
R
TADTLS
I
T
S
F
T
L
N
A
Q
R
I
I
A
Q
V
Q
L
HND
T
A
S
L
L
S
N
V
T
D
E
L
R
R
M
TGYD
R
V
M
A
Y
R
F
R
HDDSGEVV
A
E
S
R
R
EDLESYLG
Q
R
Y
P
ASDIP
A
Q
A
R
R
L
Y
I
Q
N
P
I
R
L
I
ADVA
Y
T
P
M
R
V
F
PALNPETNESFDLSYSVLRSVS
P
I
H
C
E
Y
L
T
N
M
G
V
R
A
--------------
S
M
S
I
S
I
V
-
V
G
----------------------------------
G
K
L
W
G
-
L
F
S
-
C
H
----------
H
M
S
P
-
K
--
L
--
I
-
P
------------------
Y
P
-
V
R
M
S
F
Q
I
---
F
S
Q
V
C
S
A
I
V
E
R
L
E
Q
G
R
I
A
E
L
L
R
V
S
T
E
R
R
L
A
L
A
R
R
A
R
D
A
DD
L
F
G
A
L
A
HPDDGIAALIPCD
G
A
L
V
M
L
GG
R
T
L
S
I
RGDF
E
R
Q
A
G
N
V
L
Q
R
L
QRDPERD
I
Y
H
T
DNWCC
G
V
L
A
I
R
FHRQES
G
W
I
F
W
F
R
H
EEVHR
I
R
W
G
G
K
PEKLLTIGPSGPRLT
P
R
G
S
F
E
A
W
E
E
V
V
R
GHSTPWS
E
T
D
L
A
I
A
E
K
L
R
L
D
L
M
E
L
C
L
2
HHSearch
50.15
15%
-227
- C5 -
4G1U
-
HMUU_YERPE
A:
[282-349]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
G
L
V
-
V
P
H
L
I
-
R
M
R
I
G
A
D
H
R
----
W
L
-
L
P
G
A
--------
A
L
G
G
A
C
L
-
L
L
T
-
A
D
----------
T
L
A
R
-
T
--
L
--
V
A
P
A
------
E
----
M
P
-
V
G
L
L
T
-
S
L
L
G
G
P
Y
---
F
L
W
L
I
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
38.56
5%
-308
- C5 -
4B19
-
?
A:
[7-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
A
--------------
P
V
I
S
G
C
A
-
I
A
F
F
S
-
Y
W
L
S
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
34.93
14%
-194
- C5 -
5A43
1
?
A:
[2-54]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
S
L
F
--------------
A
V
I
I
G
G
S
-
V
G
C
T
L
-
R
W
L
L
S
T
K
F
N
SLFP
N
L
-
P
P
G
T
--------
L
V
V
N
L
L
A
-
G
L
I
-
I
G
----------
T
M
L
A
-
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.84
15%
-104
- C5 -
4HZU
-
?
S:
[139-164]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
V
V
Q
-
V
G
F
G
A
G
V
---
T
L
S
I
V
G
P
L
T
R
L
K
P
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
33.72
18%
-127
- C5 -
5AZB
5
LGT_ECOLI
A:
[64-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
--------
F
L
G
V
F
L
G
-
G
R
I
-
G
Y
----------
V
L
F
Y
N
F
P
Q
F
M
A
D
-
P
L
YLFRVW
D
----
G
G
-
M
S
F
H
G
-
G
L
I
G
V
I
V
---
V
M
I
I
F
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
30.54
26%
-225
- C3 -
1OQE
-
TR13C_HUMAN
K:
[1-31]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
T
P
C
V
P
A
E
--------
C
F
D
L
L
V
R
-
H
C
V
-
A
C
----------
G
L
L
R
-
T
--
P
--
R
-
P
K
------
P
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
29.89
19%
-143
- C5 -
2KKE
-
?
A:
[1-53]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
G
R
R
P
G
----
G
G
-
L
K
D
T
K
P
V
V
V
R
--
L
Y
P
D
E
I
E
-
A
L
K
-
S
R
----------
V
P
A
N
-
T
--
S
--
M
-
S
A
------
Y
----
I
R
-
R
I
I
L
N
-
H
L
E
D
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
23.98
13%
-26
* C5 *
5D23
-
?
A:
[127-190]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
-
T
R
L
K
R
M
S
E
Y
A
A
K
R
L
S
----
S
E
-
T
R
E
Q
--------
R
A
I
R
L
A
R
M
S
A
Y
-
A
A
----------
R
R
L
A
-
N
--
E
--
T
-
P
A
------
Q
----
R
Q
-
A
R
L
L
R
M
S
----------------
A
Y
A
A
K
R
Q
A
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
22.70
5%
-167
- C5 -
2H3O
-
?
A:
[50-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
A
I
F
I
---
G
L
T
I
Y
A
I
Q
R
K
R
Q
A
D
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
17.21
40%
19
- C1 -
2HRP
-
?
P:
[1-10]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----------
S
L
P
G
-
R
--
W
--
K
-
P
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------