@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04400: (2016-06-07 )
MADNNKMSREEAGRKGGETTSKNHDKEFYQEIGQKGGEATSKNHDKEFYQEIGEKGGEATSKNHDKEFYQEIGEKGGEATSENHDKEFYQEIGRKGGEATSKNHDKEFYQEIGSKGGNARNND
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..-......---20......--..30.....--...-40......--..50......--------..----60-----------..------------......70........------80---........90........100------...--------.....110.......120.----------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADNNKM
S
R
E
E
AG-RKGGET---TSKNH
D
K
E
--
F
Y
Q
E
I
G
QKG--GEA-TSKNH
D
K
E
--
F
Y
Q
E
I
G
EKGG--------EA----TS-----------KN------------H
D
K
E
F
Y
Q
E
I
G
EKGGEA------TS---ENH
D
K
E
F
Y
Q
E
I
G
RKGGEATS-------KNH--------
D
K
E
F
Y
Q
E
I
GSKGGNARNND----------------------------------------------------
1
PsiBlast_PDB
80.45
26%
-56
- C5 -
5CWH
2
?
A:
[28-129]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
V
-
K
E
L
A
E
L
---
A
K
Q
S
T
D
S
E
--
L
V
N
E
I
V
K
Q
L
--
A
E
V
-
A
K
E
A
T
D
K
E
--
L
V
I
Y
I
V
K
I
L
A
--------
E
L
----
A
K
-----------
Q
S
------------
T
D
S
E
L
V
N
E
I
V
K
Q
L
A
E
V
------
A
K
---
E
A
T
D
K
E
L
V
I
Y
I
V
K
I
L
A
E
L
A
K
-------
Q
S
T
--------
D
S
E
L
V
N
E
I
---------------------------------------------------------------
23
Fugue
70.76
18%
37
- C4 -
2L82
-
?
A:
[1-162]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
Q
I
F
V
V
F
S
SD
P
E
I
L
K
E
I
V
R
E
I
K
R
Q
G
-
V
R
V
V
L
L
YSD
Q
D
E
K
R
R
R
E
--
R
L
E
E
F
E
K
Q
G
--
V
D
V
-
R
T
V
E
D
K
E
D
--
F
R
E
N
I
R
E
I
W
E
--------
R
Y
----
P
Q
LD
V
V
V
I
V
TTDD
K
E
------------
W
I
K
D
F
I
E
E
A
K
E
R
G
V
E
V
F
V
V
Y
N
N
K
D
---
D
D
R
R
K
E
A
Q
Q
E
F
R
S
D
G
V
D
V
R
T
V
SD
K
E
E
L
I
E
Q
--------
V
R
R
F
V
R
K
V
G
S
L
E
H
H
H
H
H
H
-----------------------------------------------------
12
PsiBlast_PDB
62.29
32%
-45
- C5 -
3Q4R
1
Y754_METJA
A:
[138-185]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
N
E
D
I
K
--
F
V
Y
E
N
L
M
K
G
-------
S
R
N
H
M
R
A
--
F
V
R
M
L
N
N
Y
G
S
--------
N
Y
----
T
P
-----------
Q
Y
------------
I
S
K
E
E
Y
E
E
I
-------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
61.61
32%
-26
- C5 -
3Q4N
-
Y754_METJA
A:
[127-174]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
N
E
D
I
K
--
F
V
Y
E
N
L
M
K
G
-------
S
R
N
H
M
R
A
--
F
V
R
M
L
N
N
Y
G
S
--------
N
Y
----
T
P
-----------
Q
Y
------------
I
S
K
E
E
Y
E
E
I
-------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
61.16
32%
-37
- C5 -
3Q4Q
1
Y754_METJA
A:
[138-185]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
N
E
D
I
K
--
F
V
Y
E
N
L
M
K
G
-------
S
R
N
H
M
R
A
--
F
V
R
M
L
N
N
Y
G
S
--------
N
Y
----
T
P
-----------
Q
Y
------------
I
S
K
E
E
Y
E
E
I
-------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
61.06
32%
-24
- C5 -
3Q4O
1
Y754_METJA
A:
[138-185]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
N
E
D
I
K
--
F
V
Y
E
N
L
M
K
G
-------
S
R
N
H
M
R
A
--
F
V
R
M
L
N
N
Y
G
S
--------
N
Y
----
T
P
-----------
Q
Y
------------
I
S
K
E
E
Y
E
E
I
-------------------------------------------------------------------------------------------------------------------------------
27
Fugue
59.20
15%
-45
- C5 -
1GZS
-
SOPE_SALTM
B:
[1-165]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSLT
N
K
V
V
K
D
F
M
L
Q
T
L
N
D
I
D
I
R
G
S
A
S
K
D
P
A
Y
A
S
Q
T
R
-
E
A
I
L
S
A
---
V
Y
S
K
N
K
D
Q
--
C
C
N
L
L
I
S
K
G
---------
I
N
I
A
P
--
F
L
Q
E
I
G
E
A
A
K
--------
N
A
G
L
P
G
T
T
-----------
K
N
D
V
F
T
P
SGAGAN
P
F
I
T
P
L
I
S
S
A
N
S
K
Y
P
R
M
------
F
I
---
N
Q
H
Q
Q
A
S
F
K
I
Y
A
E
K
I
I
M
T
E
V
-------
A
P
L
FNECAMPT
P
Q
Q
F
Q
L
I
L
E
N
I
A
N
K
Y
I
Q
N
T
P---------------------------------------------------
8
PsiBlast_PDB
58.73
22%
68
- C5 -
3HDI
2
?
A:
[37-121]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
---
A
E
E
N
G
I
S
H
--
F
L
E
H
M
F
F
K
G
--
T
N
T
-
R
S
A
Q
E
I
A
E
--
F
F
D
S
I
G
G
Q
V
N
--------
A
F
----
T
S
-----------
K
E
------------
Y
T
C
Y
Y
A
K
V
L
D
D
H
A
G
Q
A
------
I
D
---
T
L
S
D
M
F
F
H
S
T
F
Q
K
E
E
L
E
K
E
R
-------
K
---------------------------------------------------------------------------------
21
Fugue
57.76
17%
41
- C5 -
1BH9
1
B:
[1-89]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
E
E
Q
L
N
-
R
Y
E
M
Y
R
---
R
S
A
F
P
K
A
A
--
I
K
R
L
I
Q
S
I
T
--
G
T
S
-
V
S
---------------
Q
N
V
--------
V
I
----
A
M
-----------
S
G
------------
I
S
K
V
F
V
G
E
V
V
E
E
A
L
D
V
------
C
E
---
K
W
G
E
M
P
-----------
P
L
Q
-------
P
K
H
--------
M
R
E
A
V
R
R
L
K
S
K
G
Q
I
P
--------------------------------------------------------
26
Fugue
56.08
23%
184
- C5 -
3WFS
2
?
C:
[23-414]
LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTEDFYEFVKEDPRIVLKSAVERITHELFKIMKEKTAHKVIRELYEYGVLEAIIPEIGRLREVKD
P
L
D
E
H
T
L
K
T
L
E
Y
L
-
E
Q
V
I
E
D
---
R
A
K
Y
L
S
A
E
--
L
L
E
N
F
G
K
K
R
VL
G
E
F
-
T
D
V
E
L
L
K
W
GA
L
F
H
D
I
G
K
P
----------
Q
T
----
T
F
-----------
Y
E
------------
H
D
K
V
G
A
Q
I
V
R
E
I
G
E
R
L
------
R
W
---
G
D
E
A
T
E
F
V
A
K
L
V
R
---------------
H
H
--------
L
R
P
F
F
L
R
E
A
F
K
K
G
E
L
K
R
R
G
MANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK
7
PsiBlast_PDB
53.28
25%
170
- C5 -
2IUJ
-
?
A:
[726-828]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
--
F
M
P
E
K
G
S
P
E
--
Y
D
A
-
L
A
K
N
P
E
K
E
--
F
L
K
T
I
T
G
K
K
E
T
L
I
D
L
T
I
I
E
I
----
L
S
-----------
R
H
------------
A
S
D
E
F
Y
L
G
Q
R
D
G
G
D
Y
W
------
T
S
---
D
A
G
P
L
E
A
F
K
R
F
G
K
N
L
E
E
I
E
K
-------
K
L
I
--------
E
K
N
N
D
E
T
L
R
N
R
Y
G
P
A
K
-------------------------------------------------------
25
Fugue
53.26
15%
-6
- C5 -
1Q1H
-
TFE_SULSO
A:
[1-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
N
A
E
D
L
F
I
N
L
A
K
-
S
L
L
G
D
D
---
V
-----
I
D
--
V
L
R
I
L
L
D
K
G
--
T
E
M
-
T
----
D
E
E
--
I
A
N
Q
L
N
I
K
-----------------------------
V
N
------------
D
V
R
K
K
L
N
L
L
E
E
Q
G
-
F
V
------
S
Y
---
R
K
T
R
S
G
W
F
I
Y
Y
W
K
P
N
I
D
Q
I
N
-----------------------------------------------------------------------------------------
24
Fugue
50.93
18%
6
* C5 *
4LVN
1
?
P:
[13-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
R
L
I
---
V
S
E
N
H
A
T
T
PS
F
F
Q
E
S
L
L
E
-------------
P
D
--
V
L
S
F
L
E
S
K
-
G
--------
N
L
----
S
N
-----------
L
K
------------
N
I
N
S
M
I
I
E
L
K
E
D
----------
T
T
---
D
D
E
L
I
S
Y
I
K
I
L
E
E
K
G
A
L
I
E
S
-------
D
K
L
--------
V
S
A
D
-------------------------------------------------------------------
19
Fugue
50.93
19%
32
- C5 -
4YY2
1
?
A:
[5-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
S
P
T
E
V
L
L
E
L
I
A
-
E
A
S
G
-
T
---
T
R
E
E
V
K
E
K
--
F
L
K
E
L
R
K
---------
G
K
S
P
T
E
V
--
L
L
E
L
I
A
E
A
S
G
--------
T
-----
T
K
-----------
E
E
------------
V
K
E
K
F
L
K
E
L
S
F
G
K
S
----------------
P
T
E
V
L
L
E
L
I
A
E
A
S
G
T
T
K
-------
E
E
V
--------
K
K
K
F
W
K
E
L
S
L
-------------------------------------------------------------
20
Fugue
48.02
18%
37
- C3 -
2JN9
-
YKVR_BACSU
A:
[1-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
K
T
L
R
L
N
N
V
T
L
E
M
A
A
Y
Q
E
E
---
S
E
P
K
R
K
I
A
--
F
T
L
N
V
T
S
E
T
--
Y
H
D
I
A
V
L
L
Y
E
K
T
--
F
N
V
E
V
P
E
R
D
--------------------------------------------
L
A
F
R
G
E
M
T
N
Y
S
T
S
L
------
T
N
L
YE
P
G
A
V
S
E
F
Y
I
E
I
T
E
I
D
K
N
A
D
S
-------
L
E
H
--------
H
H
H
H
H
------------------------------------------------------------------
3
PsiBlast_PDB
47.16
28%
120
- C5 -
4APB
1
FUMC_MYCTU
A:
[91-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
D
D
Q
--
F
P
I
D
V
F
Q
T
G
--
S
G
T
-
S
S
N
M
N
T
N
E
--
V
I
A
S
I
A
A
K
G
G
--------
V
T
----
L
H
-----------
P
N
------------
D
D
V
N
M
S
Q
S
S
N
D
T
F
P
T
A
------
T
-----------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
46.12
28%
123
- C5 -
4ADM
1
FUMC_MYCTU
A:
[113-178]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
D
D
Q
--
F
P
I
D
V
F
Q
T
G
--
S
G
T
-
S
S
N
M
N
T
N
E
--
V
I
A
S
I
A
A
K
G
G
--------
V
T
----
L
H
-----------
P
N
------------
D
D
V
N
M
S
Q
S
S
N
D
T
F
P
T
A
------
T
-----------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
45.94
28%
142
- C5 -
3NO9
-
FUMC_MYCTU
A:
[91-154]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
D
D
Q
--
F
P
I
D
V
F
Q
T
G
--
S
G
T
-
S
S
N
M
N
T
N
E
--
V
I
A
S
I
A
A
K
G
G
--------
V
T
----
L
H
-----------
P
N
------------
D
D
V
N
M
S
Q
S
S
N
D
T
F
P
T
A
------
T
-----------------------------------------------------------------------------------------------------------------
28
Fugue
45.23
9%
-17
- C5 -
3YGS
-
CASP9_HUMAN
P:
[1-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
D
E
A
D
R
R
L
L
R
-
R
C
R
L
R
L
---
V
E
E
L
Q
V
D
Q
--
L
W
D
V
L
L
S
R
E
---------
L
F
R
P
H
--
M
I
E
D
I
Q
R
A
G
---------
S
G
----
S
R
-----------
R
D
------------
Q
A
R
Q
L
I
I
D
L
E
T
R
G
--------------
S
Q
A
L
P
L
F
I
S
C
L
E
D
T
G
---------------------------
Q
D
M
L
A
S
F
L
R
T
N
R
Q
A
G
----------------------------------------------------
5
PsiBlast_PDB
45.14
28%
137
- C5 -
4ADL
1
FUMC_MYCTU
A:
[113-169]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
D
D
Q
--
F
P
I
D
V
F
Q
T
G
--
S
G
T
-
S
S
N
M
N
T
N
E
--
V
I
A
S
I
A
A
K
G
G
--------
V
T
----
L
H
-----------
P
N
------------
D
D
V
N
M
S
Q
S
S
N
D
T
F
P
T
A
------
T
-----------------------------------------------------------------------------------------------------------------