@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04510: (2016-06-07 )
MRNFITALPIVLLLGFSFVSFMFQFEHLVYFRLALGLFSLVGLYMIYKMKTGIRYFIIYLYASWIVLAAVTAFEEPIFSSFFFGGLVMTMGYLTYMLIYLGMKQDRDANPV
Atome Classification :
(18 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-----..---------------.10..--------.-----------------.....20.-----.....--..30..-----.....--.40........50...-----.....60---..--......70........80-------..----.....--.90-........--.100----..-......110-----------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR
N
F
I
T
-----
A
L
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M
-----
F
Q
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--
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Y
F
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L
-----
A
L
G
L
F
--
S
L
V
G
L
Y
M
I
Y
KMKTG
I
R
-----
Y
F
I
I
Y
L
Y
---
A
S
--
W
I
V
L
A
A
V
T
A
F
E
E
P
I
F
S
S
F
-------
F
F
----
G
G
L
V
M
--
T
M
--
G
Y
L
T
Y
M
L
I
--
Y
LG-----MK-QDRDANPV------------------------------------------------
18
Fugue
65.22
21%
-183
* C3 *
4O6Y
3
ACFR2_ARATH
A:
[10-219]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
I
F
M
V
V
R
V
L
G
F
I
I
A
A
L
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L
T
W
T
VHYRGGLALSSDN
K
D
H
I
F
N
V
H
P
V
M
M
-----
V
I
---------------
G
L
I
L
F
--------
N
-----------------
G
E
A
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--
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-----
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-----
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---
H
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--
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L
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W
A
A
G
F
-------
V
T
YWYP
G
G
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R
N
--
S
R
--
A
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M
P
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V
--
F
L
G
-----
I
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-
I
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A
L
A
L
V
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A
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T
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I
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N
QVITRYS
T
E
A
M
L
V
N
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M
G
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I
L
I
L
G
G
F
V
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V
T
17
Fugue
63.86
16%
-171
- C1 -
4D6W
1
GLYCO_CHAV
A:
[1-415]
Y
L
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A
F
PENTKLD
W
K
P
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N
T
R
Y
C
PPG
L
Q
E
E
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S
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P
IGATPSKS
D
G
F
L
C
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A
A
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WYG
P
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S
I
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A
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A
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Y
K
S
GTLVSLGFPPESCGYASV
T
D
S
E
F
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M
I
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P
H
H
V
G
V
DDYRG
H
W
V
D
PLFVGGECDQS
Y
C
D
T
IHNS
S
V
W
I
P
ADQTKKNICG
Q
S
F
T
P
L
T
V
T
V
A
Y
D
KTKEIAAGG
I
V
F
K
S
KYHSHMEGAR
T
C
R
L
S
Y
CG
R
N
G
I
K
F
PNG
E
W
V
S
L
D
VKTRIQEKHLLPLFKECPAG
T
E
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D
G
A
Q
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E
P
L
S
-----
P
L
---------------
D
L
S
Y
L
ASKSP
G
K
G
L
-----------------
A
Y
T
V
I
N
G
T
-----
L
S
F
A
H
--
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-----
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P
--
V
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S
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I
---
W
---
T
Q
--
W
F
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M
E
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P
N
G
L
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A
-------------
G
G
Y
K
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--
P
W
--
H
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I
G
M
G
I
V
--
D
N
E
-----
L
H
-
E
L
S
E
A
N
P
L
D
H
P
Q
L
P------------------------------------------
14
Fugue
61.99
13%
-267
- C4 -
2HF6
-
COPZ1_HUMAN
A:
[1-149]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
A
L
I
L
EPSLY
T
V
---------------
K
A
I
L
I
--------
L
D
NDGDRL
F
A
K
Y
YDDTYP
S
V
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E
Q
K
A
F
-----
E
K
N
I
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--
N
K
T
H
R
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-----
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--
L
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Y
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-----
F
Y
V
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S
---
Y
E
NE
L
M
L
M
A
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C
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M
L
RKNVE
K
R
A
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----
L
E
N
M
E
--
G
L
--
F
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A
V
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E
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D
G
G
-----
V
I
-
L
E
S
D
P
Q
Q
V
V
H
R
V
A
L
R-----------------------------------------
13
Fugue
58.72
21%
-124
* C5 *
1G3P
1
?
?:
[92-217]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYGD
T
P
I
P
G
Y
T
Y
I
N
-----
P
L
DGTYPPGTEQNPANP
N
P
S
L
E
--------
E
-----------------
S
Q
P
L
N
T
F
M
-----
F
Q
N
N
R
--
F
R
N
R
Q
G
-----
A
L
T
V
Y
--
T
----
G
T
V
T
Q
G
T
D
P
V
K
-----
T
Y
Y
Q
Y
T
P
---
V
S
----
S
K
A
M
Y
D
A
Y
W
N
G
K
F
R
D
C
-------
A
F
----
H
S
---------
G
F
N
E
D
I
F
V
CE
Y
Q
G
-----
Q
S
-
S
D
L
P
Q
P
P
V
NA----------------------------------------------
19
Fugue
48.23
9%
-246
* C4 *
2JSX
-
NAPD_ECOLI
A:
[1-95]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
T
--------------------------------------------------------
N
W
Q
V
C
S
L
V
-----
V
Q
A
K
S
--
E
R
I
S
D
I
-----
S
T
Q
L
N
--
A
F
P
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C
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A
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A
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G
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-----
L
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A
---
E
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--
S
E
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L
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I
E
S
V
R
N
V
E
----------------
G
V
L
A
V
--
S
L
--
V
Y
H
Q
Q
E
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--
G
E
E
-----
T
P
-
R
S
H
H
H
H
H
H
------------------------------------------------
15
Fugue
43.01
10%
-228
- C2 -
1I0R
1
FERCR_ARCFU
A:
[1-161]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD
V
E
A
F
Y
K
I
S
Y
-----
G
L
---------------
Y
I
V
T
S
--------
E
S
NG
R
K
C
-----------
G
Q
I
A
N
T
V
F
-----
Q
L
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P
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C
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D
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A
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A
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V
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-----
M
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---
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F
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L
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--
T
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H
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A
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K
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K
E
-
C
D
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H
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L
F
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G
E
A
V
D
A
E
V
L
K
D
A
E
V
L
T
Y
A
D
Y
H
L
M
K
K
G
K
T
P
R
T---------------
7
HHSearch
42.07
26%
-193
- C3 -
5CFB
-
GLRA3_HUMAN
A:
[227-264]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-----
Y
I
---------------
P
S
L
L
I
--------
V
-----------------
I
L
S
W
V
S
F
W
-----
I
N
M
D
A
--
A
-
P
A
R
V
-----
A
L
G
I
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--
T
V
L
T
M
T
----------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
40.55
8%
-146
- C4 -
1COZ
1
TAGD_BACSU
A:
[1-126]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
K
V
I
T
Y
G
TFDLL
H
W
G
H
I
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-----
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E
R
A
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Q
--------
L
-----------------
G
D
Y
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A
I
-----
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N
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Q
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A
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--
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E
T
I
R
Y
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D
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-----
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-------
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----
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F
LK
D
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V
Y
L
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R
--
T
E
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-----
I
S
-
T
T
K
I
K
E
E
I
------------------------------------------------
20
Fugue
36.80
41%
223
- C5 -
1WM8
-
A:
[1-28]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
CEECP
M
H
C
K
G
K
N
A
N
P
T
CDDG
V
C
N
C
N
V--------------------------------------
1
HHSearch
35.45
32%
-350
* C6 *
3L32
-
PHOSP_RABVR
A:
[100-118]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
V
Q
I
V
R
Q
M
R
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G
E
R
-----
F
L
K
I
W
--------------------------------------------------------------------------------------------------------------------------------
11
Fugue
33.56
12%
-187
- C4 -
2FBL
3
3PASE_NITEU
A:
[4-153]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
E
I
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K
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LT
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-----
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R
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Q
--------
G
-----------------
T
E
Y
F
M
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S----
Q
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Y
E
I
--
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-----
F
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M
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--
P
A
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Y
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PD
G
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A
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A
F
-------
I
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----
P
P
W
F
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E
E
VT
E
D
K
R
Y
K
N
K
--
A
L
A
-----
L
S
-
I
P
------------------------------------------------------
3
HHSearch
32.96
18%
-182
- C3 -
3RQW
-
?
A:
[208-246]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-----
I
L
---------------
P
L
G
L
I
--------
I
-----------------
A
A
S
W
S
V
F
W
-----
L
E
S
F
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-----
E
R
L
-----
Q
T
S
F
T
--
L
M
L
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V
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A
Y
A
-------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
32.90
21%
-207
- C3 -
2MAW
-
A:
[13-51]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
L
I
---------------
P
C
V
L
I
--------
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-----------------
A
L
A
L
L
V
F
L
-----
L
P
A
D
S
----
G
E
K
I
-----
S
L
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I
T
--
V
L
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S
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T
V
F
--------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
32.26
21%
-180
- C3 -
4PIR
-
5HT3A_MOUSE
A:
[227-327]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
L
L
---------------
P
S
I
F
L
--------
M
-----------------
V
V
D
I
V
G
F
C
-----
L
P
P
D
S
----
G
E
R
V
-----
S
F
K
I
T
--
L
L
L
G
Y
S
V
F
--------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
30.22
50%
-294
- C6 -
1EMZ
-
?
A:
[2-13]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
--
W
G
V
L
A
G
I
A
Y
F
-------------------------------------------------------------------------------------------------------------
5
HHSearch
28.34
18%
-239
- C3 -
2KSR
-
A:
[35-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
I
I
---------------
P
C
V
L
I
--------
T
-----------------
S
L
A
I
L
V
F
Y
-----
L
P
S
D
C
----
G
E
K
M
-----
T
L
C
I
S
--
V
L
L
A
L
T
V
---------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
10.64
16%
0
- C- -
4AQ5
-
ACHA_TORMA
A:
[218-322]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-----
I
I
---------------
P
C
L
L
F
--------
S
-----------------
F
L
T
V
L
V
F
Y
-----
L
P
T
D
S
----
G
E
K
M
-----
T
L
S
I
S
--
V
L
L
S
L
T
V
---------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
0.00
15%
0
- C- -
1OED
-
ACHA_TORMA
A:
[218-356]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-----
I
I
---------------
P
C
L
L
F
--------
S
-----------------
F
L
T
G
L
V
F
Y
-----
L
P
T
D
S
----
G
E
K
M
-----
T
L
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I
S
--
V
L
L
S
L
T
V
F
--------------------------------------------------------------------------------------------------------------------------------------------------