@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04530: (2016-06-07 )
MNTNMSGGRRSMPKRKVKTYQQLIQENKEAIMGNPKLMNVIYDRIDRKHQKNLQEQNNT
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..--------.......10..---......-------------------------.20--....-..---..30---.-----.-...-...-------40........-50........-------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN--------TNMSGGRR-SM---
P
K
R
K
V
K
-------------------------
T
Y
Q
--
Q
L
I
Q
-EN---
K
E
A
I---M-----G-N
P
K
-
L
M
N
-------
V
I
Y
D
RI
D
R
K
H
-
Q
K
N
L
Q
EQNNT-------------------------------------------------------------------------------------------------------------------
18
HHSearch
69.99
27%
-147
- C5 -
1LDJ
-
CUL1_HUMAN
A:
[699-748]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
R
-
I
M
---
K
M
R
K
V
L
-------------------------
K
H
Q
--
Q
L
L
G
-
E
V
---
L
T
Q
L
---
S
SR
F
K
P
R
-
V
P
V
-
I
K
K
-------
C
I
D
I
L
I
E
K
E
Y
-
L
E
R
--------------------------------------------------------------------------------------------------------------------------
24
Fugue
68.29
19%
-41
- C5 -
2KON
-
?
A:
[1-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
--------
V
A
H
Y
R
G
Y
E
-
I
E
---
P
G
H
Q
Y
R
DDIRKY
V
P
Y
A
L
I
R
K
VGVPD
R
T
P
I
P
T
T
Y
P
--
E
F
Y
D
-
L
E
---
A
D
A
E
---
R
-----
V
-
S
I
A
-
C
A
K
-------
I
I
I
D
S
H
L
D
R
H
-
D
Q
G
L
A
D
L
G
---------------------------------------------------------------------------------------------------------------------
22
Fugue
66.58
21%
-91
- C5 -
2KKE
-
?
A:
[1-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
V
G
--------
R
R
P
G
G
G
L
K
-
D
T
---
K
P
V
V
V
R
-------------------------
L
Y
P
--
D
E
I
E
-
A
L
---
K
S
R
V
---
P
-----
A
-
N
T
S
--
M
S
-------
A
Y
I
R
R
I
I
L
N
H
-
L
E
D
E
-------------------------------------------------------------------------------------------------------------------------
7
HHSearch
64.93
25%
-159
- C5 -
2DO7
-
CUL4B_HUMAN
A:
[836-882]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
R
-
I
M
---
K
M
R
K
T
L
-------------------------
S
H
N
--
L
L
V
S
-
E
V
---
Y
N
Q
L
K
F
P
V
-----
K
-
P
A
D
-
L
K
K
-------
R
I
E
S
L
I
D
R
D
Y
-
M
E
---------------------------------------------------------------------------------------------------------------------------
21
Fugue
61.41
14%
-66
- C5 -
1S0Y
1
?
B:
[2-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
--------
I
E
C
H
I
A
T
G
-
L
S
---
V
A
R
K
Q
Q
-------------------------
L
I
R
--
D
V
I
D
-
V
T
---
N
K
S
I
---
G
-----
S
-
D
P
K
-
I
I
N
-------
V
L
L
V
E
H
A
E
A
N
-
M
S
----
I
S
G
R
-------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
61.05
32%
-108
- C5 -
4JQU
2
UBC7_YEAST
A:
[3-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
A
S
K
-
T
A
---
Q
K
R
L
L
K
-------------------------
E
L
Q
--
Q
L
I
K
-
D
S
---
P
P
G
I
---
V
-----
A
-
G
P
K
-
S
E
N
-------
N
I
F
-------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
60.70
20%
-124
- C5 -
1IUY
-
A:
[31-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
R
-
I
M
---
K
S
R
K
K
M
-------------------------
Q
H
N
--
V
L
V
A
-
E
V
---
T
Q
Q
L
---
K
AR
F
L
P
S
-
P
V
V
-
I
K
K
-------
R
I
E
G
L
I
E
R
E
Y
-
L
A
R
--------------------------------------------------------------------------------------------------------------------------
26
Fugue
56.23
13%
-24
- C4 -
2W18
5
A:
[24-356]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
L
Q
L
V
S
E
L
K
N
P
S
G
S
C
S
V
D
V
S
A
M
F
W
EK
E
P
C
I
I
T
A
C
ED
V
V
S
L
W
K
A
LDAW
Q
W
E
K
L
Y
T
W
H
F
A
EVPVL
Q
I
V
P
V
P
DVYN
L
V
C
V
A
L
G
NLEIR
E
I
R
A
L
F
CEKQVLLKSGNIK
A
V
L
G
L
T
KR
R
L
V
S
S
S
G
TLSD
Q
Q
V
E
V
M
T
F
A
--------
E
D
G
G
G
K
E
N
-
Q
F
L
MP
P
E
E
T
I
L
-------------------------
T
F
A
--
E
-
V
Q
-
G
M
---
Q
E
A
L
---
L
-----
G
-
T
T
I
-
M
N
N
-------
I
V
I
W
N
L
K
T
G
Q
-
L
L
K
K
M
H
I
D
D
A
SVCH
K
A
Y
S
E
MG
L
L
F
I
V
L
SPV
F
Q
L
I
V
I
NPKTTLSVGV
M
L
Y
C
L
P
P
G
Q
A
G
R
F
L
E
G
D
V
K
DH
C
A
A
A
I
L
TSG
T
I
A
I
W
DLLLGQCT
A
L
L
P
P
VQHWS
F
V
K
W
S
GTDS
H
L
L
A
G
Q
KDG
N
I
F
V
Y
H
Y
S
29
Fugue
53.12
12%
-52
- C5 -
1BW5
-
A:
[1-66]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
--------
T
T
--
R
V
R
T
-
V
L
---
N
E
K
Q
L
H
-------------------------
T
L
R
--
T
C
Y
A
-
A
N
---
P
R
P
D
---
A
-----
L
-
M
K
E
-
Q
L
V
-------
E
M
T
G
L
S
P
R
V
I
-
R
V
W
F
Q
N
K
R
C
K
D
K
KRSIMMK----------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
52.83
33%
-19
- C5 -
3LM2
-
?
A:
[141-176]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
P
Y
R
K
G
K
-------------------------
T
Y
E
--
H
Y
V
S
-
E
A
---
Y
R
E
K
---
K
-----
G
-
N
A
K
-
W
Q
K
-------
R
V
Q
D
V
V
E
R
--------------------------------------------------------------------------------------------------------------------------------
20
Fugue
52.70
23%
49
- C5 -
2MC5
-
?
A:
[1-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
E
F
T
Q
I
S
GY
V
N
A
F
G
S
Q
R
G
S
V
---
L
T
V
K
V
E
-------------------------
N
D
E
GW
T
L
V
E
-
E
D
F
D
-
R
A
D
Y
---
G
-----
S
-
D
P
E
-
F
V
A
-------
E
V
S
S
Y
L
K
R
N
G
G
I
K
D
L
T
K
V
L
T
R
-------------------------------------------------------------------------------------------------------------------
27
Fugue
52.61
10%
-18
* C5 *
3MB2
1
?
B:
[1-59]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
M
L
--------
E
V
F
Y
S
G
D
R
-
P
P
---
D
R
T
R
K
Q
-------------------------
A
F
A
--
A
E
A
S
-
A
I
---
F
Q
R
V
---
I
-----
G
-
T
P
P
G
R
L
Q
-------
L
I
I
Q
I
V
S
P
E
N
-
T
L
A
V
I
D
L
D
---------------------------------------------------------------------------------------------------------------------
8
HHSearch
50.44
13%
-89
- C5 -
1X9B
-
?
A:
[7-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-------------------------
K
F
E
--
S
M
I
N
S
P
S
---
K
S
V
F
---
V
-----
R
-
N
L
N
-
E
L
E
-------
A
L
A
V
R
L
G
K
S
Y
-
R
I
Q
L
D
Q
A
K
---------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
49.12
40%
186
- C5 -
3NV0
4
NXT1_CAEEL
B:
[20-54]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-------------------------
T
T
Q
--
E
I
N
K
-
E
D
---
E
E
L
C
---
N
-----
E
-
S
K
K
-
F
M
D
-------
V
Y
Y
D
V
M
D
R
K
R
-
E
K
---------------------------------------------------------------------------------------------------------------------------
28
Fugue
47.37
11%
0
- C5 -
2F7F
12
?
A:
[4-485]
TYADDSLTLHTD
M
Y
Q
I
N
M
M
Q
T
Y
W
E
L
GRADL
H
A
V
F
E
C
Y
F
REMPFNHG
Y
A
I
F
A
G
L
E
R
L
V
N
Y
L
E
N
LTFT
E
S
D
I
A
Y
L
R
EVEEYP
E
D
F
L
T
Y
L
A
N
F
E
F
K
C
T
V
R
S
A
L
EG
D
L
V
F
N
NEPL
I
Q
I
E
G
P
L
A
Q
C
Q
L
V
E
T
A
L
L
N
M
V
N
F
Q
T
L
I
A
T
K
A
A
R
I
K
S
V
I
GDDPLLEFGTRRAQE
L
D
A
A
I
W
G
T
R
A
A
Y
I
G
GADATSN
V
R
A
G
K
I
FG
I
P
V
S
G
T
H
A
H
S
L
V
Q
S
Y
GN
D
Y
E
A
F
M
A
Y
A
K
T
H
R
D
C
V
F
LVDTYDTLKA
G
V
P
S
A
I
R
V
A
R
E
M
GDKINFL
G
V
R
I
DSGD
M
A
Y
I
S
K
R
V
R
E
Q
L
D
E
A
GFTE
A
K
I
Y
A
S
N
DLD
E
N
T
I
L
N
L
K
M
Q
KSKID
V
W
G
V
G
T
K
L
I
T
AYDQPALG
A
V
F
K
L
V
S
I
E
G
EDG
Q
M
K
D
T
I
K
L
S
SNAEKVTTPGK
K
Q
V
W
R
I
T
R
KSDKKSE
G
D
Y
V
T
L
WNEDPRQEE
E
I
Y
M
F
H
PVHTFI
N
K
Y
V
R
D
F
E
A
R
P
V
L
Q
--------
D
I
F
V
E
G
K
R
-
V
Y
---
E
L
P
T
L
D
-------------------------
E
I
K
--
Q
Y
A
K
-
E
N
---
L
D
S
L
---
H
-----
E
-
E
Y
K
-
R
D
L
NPQKYPV
D
L
S
T
D
C
W
N
H
K
-
M
N
L
L
E
K
V
R
K
D
V
KH----------------------------------------------------------------------------------------------------------------
14
HHSearch
47.16
40%
-121
- C5 -
2K5C
-
?
A:
[28-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
I
-
E
N
---
F
E
E
I
---
V
-----
K
-
D
R
E
-
R
-------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
42.85
39%
-32
- C5 -
3TDU
-
CUL1_HUMAN
C:
[17-39]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
-
I
M
---
K
M
R
K
V
L
-------------------------
K
H
Q
--
Q
L
L
G
-
E
V
---
L
T
Q
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
40.66
26%
-
- C5 -
4C46
1
?
A:
[32-58]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
I
E
-
A
N
---
D
R
E
I
---
N
-----
L
-
V
P
A
-
S
I
K
-------
Q
I
E
W
K
I
E
E
I
-------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
39.60
20%
-
- C5 -
4PAS
-
GABR2_HUMAN
B:
[782-804]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
S
T
S
-------------------------
R
L
E
--
G
L
Q
S
-
E
N
H
H
L
R
M
K
I
---
T
-----
E
-------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
39.04
12%
-80
- C5 -
1X3Z
-
B:
[16-72]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
--------
I
G
L
T
V
E
D
L
-
L
S
---
L
R
Q
V
V
S
-------------------------
G
N
P
--
E
A
L
A
-
P
L
---
L
E
N
I
---
S
-----
A
R
Y
P
Q
-
L
R
E
-------
H
I
M
A
N
P
E
V
F
V
-
S
M
L
L
E
A
V
----------------------------------------------------------------------------------------------------------------------