@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04540: (2016-06-07 )
MERTENLKKGEKGALLNIFAYVILAVVKLVIGILYHSEALRADGLNNGTDIVASVAVLIGLRISQRPADSDHPYGHYRAETISSLVASFIMMAVGIEVLIGGGKAIAGGTTETPNLIAAWTALGSAVFMYGIYLYNKRLAASIKSSALMAAAKDSRSDAFVSAGAFIGVFSSQLKLPWVDPVTAFIIGIIICKTAWDIFKDASHSLTDGFHLKDLEPYKQTVGRIENVHRLKDVKARYLGSTVHIEMVITVDPKLTVEEGHGVADEVEDKIKHEHDVTHVHVHVEPDDIK
Atome Classification :
(20 SA)
.........10........20....---....30........40........50........60........70........80....-----------....90....-....100----........110.......120.-----.....-----.130..-.....140.......150.......160.......170.----......180----..--.......190.......200......-.-210...-....--220...----....230.......--240.......250-.......260------........270..-.-....280.......290---------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MER
T
E
N
LKKGEKG
A
L
L
N
I
F
A
Y
V
I
L
A
---
V
V
K
L
V
I
G
I
L
Y
H
S
E
A
LRADGLNN
G
T
D
I
V
A
S
V
A
V
L
I
G
L
R
ISQRPADSDHPYG
H
Y
R
A
E
T
I
S
S
L
-----------
V
A
S
F
I
M
M
A
VG-
I
E
V
L
IG-----GG
K
A
IAGGTTETP
N
L
I
A
A
W
T
A
L
-----
G
S
A
V
F
-----
M
Y
G
I
Y
L
-Y
N
K
R
L
A
A
S
I
K
S
S
A
L
M
A
AAKDSRSD
A
F
VSA
G
A
F
I
G
V
F
SSQ----LKLPWV
D
------
P
V
--
T
A
F
I
I
G
I
I
I
C
K
T
A
W
D
I
F
K
DASHSLTD-G-FHLKD
L
-
E
P
Y
K
--
Q
T
V
G
R
I
----
E
N
V
H
R
L
K
D
V
K
A
R
YL--G
S
T
V
H
I
E
M
V
I
TVD-
P
K
L
T
V
EEGH-------G
V
A
D
E
V
E
D
K
I
KHE-H-D
V
T
H
V
H
V
H
VEPDDIK-----------------------------------------------------
35
HHSearch
73.33
21%
-99
- C2 -
3H90
7
FIEF_ECOLI
A:
[2-283]
---------
V
S
R
A
A
I
A
A
T
A
M
A
S
L
L
L
---
L
I
K
I
F
A
W
W
Y
T
G
S
V
S
I
L
A
A
L
V
D
S
L
V
D
I
G
A
S
L
T
N
L
L
V
V
R
Y
S
L
Q
P
A
D
D
N
H
S
F
G
H
G
K
A
E
S
L
A
A
L
-----------
A
Q
S
M
F
I
S
G
S
A
-
L
F
L
F
L
T
-----
G
I
Q
H
L
I
S
P
T
P
M
T
D
P
G
V
G
V
I
V
T
I
-----
V
A
L
I
C
-----
T
I
I
L
V
S
-
F
Q
R
W
V
V
R
R
T
Q
S
Q
A
V
R
A
D
M
L
H
Y
Q
S
D
V
M
M
N
G
A
I
L
L
A
L
G
L
S
W
----
Y
G
W
H
R
A
D
------
A
L
--
F
A
L
G
I
G
I
Y
I
L
Y
S
A
L
R
M
G
Y
E
A
V
Q
S
L
L
D
R
A
-
L
P
D
E
E
R
-
Q
E
I
I
--
D
I
V
T
S
W
----
P
G
V
S
G
A
H
D
L
R
T
R
Q
S
--
G
P
T
R
F
I
Q
I
H
L
E
M
E
-
D
S
L
P
L
V
Q
A
H
-------
M
V
A
D
Q
V
E
Q
A
I
L
R
R
-
F
-
P
G
S
D
V
I
I
H
Q
D
P
C
S
V
V
-----------------------------------------------------
34
HHSearch
70.15
23%
-88
- C2 -
3J1Z
-
?
P:
[4-291]
--
T
S
Q
Y
D
F
W
V
K
L
A
S
R
A
S
V
A
T
A
L
T
L
I
---
T
I
K
L
L
A
W
L
Y
S
G
S
A
S
M
L
A
S
L
T
D
S
F
A
D
T
L
A
S
I
I
N
F
I
A
I
R
Y
A
I
V
P
A
D
H
D
H
R
Y
G
H
G
K
A
E
P
L
A
A
L
-----------
A
Q
S
A
F
I
M
G
S
A
-
F
L
L
L
F
Y
-----
G
G
E
R
L
L
N
P
S
P
V
E
N
A
T
L
G
V
V
V
S
V
-----
V
A
I
V
L
-----
T
L
A
L
V
L
-
L
Q
K
R
A
L
A
A
T
N
S
T
V
V
E
A
D
S
L
H
Y
K
S
D
L
F
L
N
A
A
V
L
L
A
L
V
L
S
Q
----
Y
G
W
W
W
A
D
------
G
L
--
F
A
V
L
I
A
C
Y
I
G
Q
Q
A
F
D
L
G
Y
R
S
I
Q
A
L
L
D
R
E
-
L
D
E
D
T
R
-
Q
R
I
K
--
L
I
A
K
E
D
----
P
R
V
L
G
L
H
D
L
R
T
R
Q
A
--
G
K
T
V
F
I
Q
F
H
L
E
L
D
-
G
N
L
S
L
N
E
A
H
-------
S
I
T
D
T
T
G
L
R
V
K
A
A
-
F
-
E
D
A
E
V
I
I
H
Q
D
P
V
Q
V
------------------------------------------------------
3
PsiBlast_PDB
66.46
23%
-86
- C2 -
3H90
7
FIEF_ECOLI
A:
[15-279]
----------------------
L
L
L
---
L
I
K
I
F
A
W
W
Y
T
G
S
V
S
I
L
A
A
L
V
D
S
L
V
D
I
G
A
S
L
T
N
L
L
V
V
R
Y
S
L
Q
P
A
D
D
N
H
S
F
G
H
G
K
A
E
S
L
A
A
L
-----------
A
Q
S
M
F
I
S
G
S
A
-
L
F
L
F
L
T
-----
G
I
Q
H
L
I
S
P
T
P
M
T
D
P
G
V
G
V
I
V
T
I
-----
V
A
L
I
C
-----
T
I
I
L
V
S
-
F
Q
R
W
V
V
R
R
T
Q
S
Q
A
V
R
A
D
M
L
H
Y
Q
S
D
V
M
M
N
G
A
I
L
L
A
L
G
L
S
W
----
Y
G
W
H
R
A
D
------
A
L
--
F
A
L
G
I
G
I
Y
I
L
Y
S
A
L
R
M
G
Y
E
A
V
Q
S
L
L
D
-
R
--
A
L
P
D
E
-
E
R
Q
E
I
I
D
I
V
T
S
W
----
P
G
V
S
G
A
H
D
L
R
T
R
Q
S
--
G
P
T
R
F
I
Q
I
H
L
E
M
E
-
D
S
L
P
L
V
Q
A
H
-------
M
V
A
D
Q
V
E
Q
A
I
L
R
R
-
F
-
P
G
S
D
V
I
I
H
Q
D
P
---------------------------------------------------------
1
PsiBlast_PDB
62.14
25%
-90
- C2 -
3J1Z
-
?
P:
[23-288]
---------------------
L
T
L
I
---
T
I
K
L
L
A
W
L
Y
S
G
S
A
S
M
L
A
S
L
T
D
S
F
A
D
T
L
A
S
I
I
N
F
I
A
I
R
Y
A
I
V
P
A
D
H
D
H
R
Y
G
H
G
K
A
E
P
L
A
A
L
-----------
A
Q
S
A
F
I
M
G
S
A
-
F
L
L
L
F
Y
-----
G
G
E
R
L
L
N
P
S
P
V
E
N
A
T
L
G
V
V
V
S
V
-----
V
A
I
V
L
-----
T
L
A
L
V
L
-
L
Q
K
R
A
L
A
A
T
N
S
T
V
V
E
A
D
S
L
H
Y
K
S
D
L
F
L
N
A
A
V
L
L
A
L
V
L
S
Q
----
Y
G
W
W
W
A
D
------
G
L
--
F
A
V
L
I
A
C
Y
I
G
Q
Q
A
F
D
L
G
Y
R
S
I
Q
A
L
L
D
------
R
E
L
D
E
D
T
R
--
Q
R
I
K
L
I
AKED
P
R
V
L
G
L
H
D
L
R
T
R
Q
A
--
G
K
T
V
F
I
Q
F
H
L
E
L
D
-
G
N
L
S
L
N
E
A
H
-------
S
I
T
D
T
T
G
L
R
V
K
A
A
-
F
-
E
D
A
E
V
I
I
H
Q
D
P
---------------------------------------------------------
24
Fugue
57.58
21%
-64
- C2 -
2QFI
2
FIEF_ECOLI
A:
[5-290]
-----
Y
G
R
L
V
S
R
A
A
I
A
A
T
A
M
A
S
L
L
L
---
L
I
K
I
F
A
W
W
Y
T
G
S
V
S
I
L
A
A
L
V
D
S
L
V
D
I
G
A
S
L
T
N
L
L
V
V
R
Y
S
L
Q
P
A
D
D
N
H
S
F
G
H
G
K
A
E
S
L
A
A
L
-----------
A
Q
S
M
F
I
S
G
S
A
-
L
F
L
F
L
T
-----
G
I
Q
H
L
I
S
P
T
P
M
T
D
P
G
V
G
V
I
V
T
I
-----
V
A
L
I
C
-----
T
I
I
L
V
S
-
F
Q
R
W
V
V
R
R
T
Q
S
Q
A
V
R
A
D
M
L
H
Y
Q
S
D
V
M
M
N
G
A
I
L
L
A
L
G
L
S
W
----
Y
G
W
H
R
A
D
------
A
L
--
F
A
L
G
I
G
I
Y
I
L
Y
S
A
L
R
M
G
Y
E
A
V
Q
S
L
L
D
-
R
A
L
P
D
E
E
R
-
Q
E
I
I
--
D
I
V
T
S
W
----
P
G
V
S
G
A
H
D
L
R
T
R
Q
S
--
G
P
T
R
F
I
Q
I
H
L
E
M
E
-
D
S
L
P
L
V
Q
A
H
-------
M
V
A
D
Q
V
E
Q
A
I
L
R
R
-
F
-
P
G
S
D
V
I
I
H
Q
D
P
C
S
V
V
-----------------------------------------------------
37
HHSearch
53.49
24%
-190
- C2 -
3W61
2
?
A:
[3-82]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
E
A
V
Q
-
N
R
I
V
--
E
A
A
E
R
V
----
P
G
V
R
G
V
I
H
L
R
A
R
Y
V
--
G
Q
D
I
W
A
D
M
I
I
G
V
D
-
P
E
N
T
V
E
Q
A
H
-------
E
I
C
E
A
V
Q
A
A
V
C
G
K
-
I
R
R
I
E
S
L
A
V
S
A
E
A
R
E
-------------------------------------------------------
2
PsiBlast_PDB
50.73
23%
-59
- C2 -
2QFI
2
FIEF_ECOLI
A:
[22-286]
----------------------
L
L
L
---
L
I
K
I
F
A
W
W
Y
T
G
S
V
S
I
L
A
A
L
V
D
S
L
V
D
I
G
A
S
L
T
N
L
L
V
V
R
Y
S
L
Q
P
A
D
D
N
H
S
F
G
H
G
K
A
E
S
L
A
A
L
-----------
A
Q
S
M
F
I
S
G
S
A
-
L
F
L
F
L
T
-----
G
I
Q
H
L
I
S
P
T
P
M
T
D
P
G
V
G
V
I
V
T
I
-----
V
A
L
I
C
-----
T
I
I
L
V
S
-
F
Q
R
W
V
V
R
R
T
Q
S
Q
A
V
R
A
D
M
L
H
Y
Q
S
D
V
M
M
N
G
A
I
L
L
A
L
G
L
S
W
----
Y
G
W
H
R
A
D
------
A
L
--
F
A
L
G
I
G
I
Y
I
L
Y
S
A
L
R
M
G
Y
E
A
V
Q
S
L
L
D
-
R
--
A
L
P
D
E
-
E
R
Q
E
I
I
D
I
V
T
S
W
----
P
G
V
S
G
A
H
D
L
R
T
R
Q
S
--
G
P
T
R
F
I
Q
I
H
L
E
M
E
-
D
S
L
P
L
V
Q
A
H
-------
M
V
A
D
Q
V
E
Q
A
I
L
R
R
-
F
-
P
G
S
D
V
I
I
H
Q
D
P
---------------------------------------------------------
4
PsiBlast_PDB
49.82
29%
-166
- C2 -
3W63
2
?
A:
[17-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
----
P
G
V
R
G
V
I
H
L
R
A
R
Y
V
--
G
Q
D
I
W
A
D
M
I
I
G
V
D
-
P
E
N
T
V
E
Q
A
H
-------
E
I
C
E
A
V
Q
A
A
V
C
G
K
I
R
-
R
I
E
S
L
H
V
S
A
E
A
R
--------------------------------------------------------
36
HHSearch
49.52
25%
-154
* C2 *
3BYP
1
?
A:
[6-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
L
P
P
E
E
V
-
E
R
I
R
--
A
F
L
Q
E
R
I
R--
G
R
A
L
E
V
H
D
L
K
T
R
R
A
--
G
P
R
S
F
L
E
F
H
L
V
V
R
-
G
D
T
P
V
E
E
A
H
-------
R
L
C
D
E
L
E
R
A
L
A
Q
A
-
F
-
P
G
L
Q
A
T
I
H
V
E
P
E
G
-------------------------------------------------------
33
Fugue
49.09
17%
-142
- C1 -
3PRB
-
FKBP2_METJA
A:
[1-223]
-----
M
V
E
K
G
K
------
M
V
K
I
S
Y
D
G
---
Y
V
D
G
K
L
F
D
T
T
N
E
E
L
A
K
K
E
G
I
Y
N
P
A
M
I
Y
G
P
V
A
I
F
A
G
-----------------
E
G
Q
V
L
P
G
L
-----------
D
E
A
I
L
E
M
D
V
G
---------------------
E
E
R
E
V
V
L
P
P
E
K
A
F
-----
G
K
---------------
R
D
P
S
K
I
K
L
I
P
L
S
E
F
T
K
R
G
I
K
P
I
K
G
L
T
I
T
I
D
G
I
P
G
K
I
V
S
I
NSG
R
V
L
V
D
F
N
H
------
E
L
AG
K
E
V
K
Y
R
I
K
I
E
E
V
----
V
D
D
K
K
N
I
V
K
E
-
I
-
V
K
M
Y
---------------------
V
P
R
L
S
D
V
K
V
T
I
R
--
N
G
T
V
K
I
E
L
P
E
F
A
P
F
I
P
N
I
Q
T
A
K
M
-------
A
I
A
N
E
I
L
K
R
L
E
D
A
-
E
-
K
V
S
F
V
E
T
F
E
R
K
---------------------------------------------------------
17
PsiBlast_PDB
48.91
28%
-174
- C2 -
3W65
2
?
A:
[17-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
----
P
G
V
R
G
V
I
H
L
R
A
R
Y
V
--
G
Q
D
I
W
A
A
M
I
I
G
V
D
-
P
E
N
T
V
E
Q
A
A
-------
E
I
C
E
A
V
Q
A
A
V
C
G
K
I
R
-
R
I
E
S
L
H
V
S
A
E
A
R
E
I
------------------------------------------------------
38
HHSearch
48.48
29%
-152
- C2 -
2ZZT
2
?
A:
[9-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
M
Y
-
D
D
I
F
--
A
V
L
E
R
F
----
P
N
V
H
N
P
H
R
V
R
I
R
R
V
--
G
T
-
Y
F
I
E
M
D
I
E
V
D
-
G
K
M
S
V
K
D
A
H
-------
E
L
T
V
K
I
R
K
E
M
L
K
R
-
R
D
D
I
E
D
V
T
I
H
V
E
P
L
G
N
------------------------------------------------------
5
PsiBlast_PDB
48.38
29%
-170
- C2 -
3W64
3
?
A:
[17-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
----
P
G
V
R
G
V
I
H
L
R
A
R
Y
V
--
G
Q
D
I
W
A
D
M
I
I
G
V
D
-
P
E
N
T
V
E
Q
A
H
-------
E
I
C
E
A
V
Q
A
A
V
C
G
K
I
R
-
R
I
E
S
L
H
V
S
A
E
A
R
--------------------------------------------------------
16
PsiBlast_PDB
47.77
28%
-179
- C2 -
3W60
2
?
A:
[17-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
----
P
G
V
R
G
V
I
H
L
R
A
R
Y
V
--
G
Q
D
I
W
A
D
M
I
I
G
V
D
-
P
E
N
T
V
E
Q
A
A
-------
E
I
C
E
A
V
Q
A
A
V
C
G
K
I
R
-
R
I
E
S
L
H
V
S
A
E
A
R
E
-------------------------------------------------------
14
PsiBlast_PDB
45.69
32%
-137
- C2 -
3BYR
3
?
A:
[25-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
A
----
L
E
V
H
---
D
L
K
T
R
R
A
--
G
P
R
S
F
L
E
F
H
L
V
V
R
-
G
D
T
P
V
E
E
A
H
-------
R
L
C
D
E
L
E
R
A
L
A
Q
A
-
F
-
P
G
L
Q
A
T
I
H
V
E
P
E
--------------------------------------------------------
13
PsiBlast_PDB
44.56
32%
-117
- C2 -
3BYP
1
?
A:
[25-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
A
----
L
E
V
H
---
D
L
K
T
R
R
A
--
G
P
R
S
F
L
E
F
H
L
V
V
R
-
G
D
T
P
V
E
E
A
H
-------
R
L
C
D
E
L
E
R
A
L
A
Q
A
-
F
-
P
G
L
Q
A
T
I
H
V
E
P
E
--------------------------------------------------------
23
PsiBlast_CBE
42.48
32%
-115
- C2 -
3BYP
2
?
B:
[25-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
A
----
L
E
V
H
---
D
L
K
T
R
R
A
--
G
P
R
S
F
L
E
F
H
L
V
V
R
-
G
D
T
P
V
E
E
A
H
-------
R
L
C
D
E
L
E
R
A
L
A
Q
A
-
F
-
P
G
L
Q
A
T
I
H
V
E
P
E
--------------------------------------------------------
22
PsiBlast_CBE
41.06
35%
-185
- C2 -
3W8P
1
?
B:
[17-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
----
P
G
V
R
G
V
I
H
L
R
A
R
Y
V
--
G
Q
D
I
W
A
A
M
I
I
G
V
D
-
P
E
N
T
V
E
Q
A
H
-------
E
I
C
E
A
V
Q
-----------------------------------------------------------------------------
31
Fugue
40.58
15%
-129
- C- -
3PV2
-
?
A:
[6-439]
M
P
S
M
A
P
V
L
K
N
I
M
P
A
I
V
N
V
A
V
Q
G
Y
L
P
NR
K
F
E
S
I
G
S
G
V
I
I
D
P
N
----
N
G
V
I
I
T
N
D
H
V
I
R
N
A
S
L
I
T
V
T
L
Q
D
G
R
R
L
K
A
R
L
I
G
G
D
S
E
T
D
L
A
V
L
K
I
D
A
K
N
L
K
S
L
V
I
G
D
S
D
K
L
E
V
G
D
F
V
V
A
I
G
N
PFGL
S
Q
S
A
T
F
G
I
V
S
A
L
K
N
F
I
Q
T
D
A
A
I
NPGNS
G
G
A
L
V
N
AKGE
L
I
G
I
N
T
A
I
L
V
G
I
G
F
A
I
P
I
N
M
V
K
D
V
A
Q
Q
I
I
K
F
G
S
I
H
R
G
-
L
M
G
I
F
V
Q
H
----
L
T
P
E
L
A
Q
A
M
GYPE
D
F
--
Q
G
A
L
V
S
Q
V
N
P
N
S
P
A
E
L
A
G
L
K
A
G
D
I
I
T
-
Q
-
I
N
D
T
K
I
-
T
Q
A
T
--
Q
V
K
T
T
I
----
S
L
L
R
V
G
S
T
V
K
I
I
V
E
R
D
N
K
P
L
T
L
S
A
V
V
T
D
I
-
K
S
H
E
Q
K
L
Q
S
N
N
PFLYG
L
A
L
R
A
F
E
Q
E
S
P
P
H
-
G
-
N
V
I
G
V
Q
V
V
G
A
S
E
N
S
A
G
W
R
A
GIRPG
D
I
I
ISANKKPVTD
V
K
S
L
Q
T
I
A
Q
EKKK
E
L
L
V
Q
V
L
R
GP
G
S
M
Y
L
L
V
I
12
PsiBlast_PDB
39.69
35%
-216
- C2 -
3W5Z
1
?
A:
[17-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
----
P
G
V
R
G
V
I
H
L
R
A
R
Y
V
--
G
Q
D
I
W
A
A
M
I
I
G
V
D
-
P
E
N
T
V
E
Q
A
H
-------
E
I
C
E
A
V
Q
-----------------------------------------------------------------------------