@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04600: (2016-06-07 )
MMSEPKRLHPVAVILNLCHTIIQTIKNIILPFFFVYIVNSNHTVRFYGAIALGVLFIWLVAASIIKWRRFTYRIEDDEFRIEEGLFVTKKRYISIDRIQTMNTSAGLVQQIFKLVKLQIETAGGGKEAEAVLSAISVEEAERIKEAVFKKKAQRRENELDEERLEAEEELDPSVEVQEHYRMNAKELLMAASTSGGIGVIISAVFALISQLDEVLPMDWLFDKFSFLQHASIGIYAVLIFIGLFIAWIFSIAGMMFRYANFQIIKKEQELVISRGIIEKHQVTIPLRKIQAIKIKENIIRQLFGFVTVSIVSAGGGDREKEEGALTILFPMIHKKKLPHMLRTFTPEYTLEENCRRLPRRALKRYLFRSVIFSLFLIIPLCIFFQPWGYLSVILLPIELLFGYLAYKEAAWTINGDRLQLTSRFIGRTTAIVLKKRMQVCKFSQSYFQKKGRLYTISTSVKSSSHMEELTVRDVGEEDAAFILKWYSYEKADG
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420...--.....430.......440.......450.......460.......470.......480.......490.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MMSEPKRL
H
P
V
A
V
I
L
N
L
C
H
T
I
I
Q
T
I
K
N
I
I
L
P
F
F
F
V
Y
I
VNSN
H
T
V
R
F
Y
G
A
I
A
L
G
V
L
F
I
W
L
V
A
A
S
I
I
K
WR
R
F
T
Y
R
IEDDE
F
R
IEE
G
L
F
V
T
K
K
R
Y
I
S
I
D
R
I
QTMNT
S
A
G
L
V
Q
Q
I
F
K
L
V
K
L
Q
I
E
TAGGG
K
E
A
E
A
V
L
S
A
I
S
V
E
E
A
E
R
I
K
E
A
V
F
K
K
K
A
Q
R
RENEL
D
E
E
R
L
E
A
E
EELDPS
V
E
V
Q
E
H
YRM
N
A
K
E
L
L
MAASTSG
G
I
G
V
I
I
S
A
V
F
A
L
I
S
Q
L
D
E
VL
P
M
D
W
L
F
D
K
F
S
F
L
Q
HA
S
I
G
I
Y
A
V
L
I
F
I
G
L
F
I
A
W
I
F
S
I
A
G
M
M
F
RYA
N
F
Q
I
I
K
K
E
Q
E
L
V
I
SRGIIEK
H
Q
V
T
I
P
L
R
K
I
Q
A
I
K
I
K
E
N
I
I
R
Q
L
F
G
F
V
T
V
S
I
V
SAGGGDREKEE
G
A
L
T
I
L
F
P
M
I
H
K
K
K
L
P
H
M
L
R
TFTPEY
T
L
E
E
N
C
R
R
L
P
R
R
A
L
K
R
Y
L
F
R
S
V
I
F
S
L
F
L
I
I
P
L
C
I
F
FQP
W
G
Y
L
S
V
I
L
L
P
I
E
L
L
F
G
Y
L
A
YK
E
A
A
W
T
ING
D
R
L
Q
L
-
T
S
R
F
--IG
R
T
T
A
I
V
L
K
K
R
M
Q
V
C
K
F
S
Q
S
Y
F
Q
KKG
R
L
Y
T
I
S
TSVKSSS
H
M
E
E
L
T
V
RDVGEE
D
A
A
F
I
L
K
W
Y
S
YEKADG
10
PsiBlast_PDB
94.63
32%
0
- C- -
1WN7
-
DPOL_THEKO
A:
[584-693]
---------------------------------------------------------------------------------
E
R
G
F
F
V
T
K
K
K
Y
A
V
I
D
E
-
E
G
K
I
T
T
R
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
A
L
L
K
D
G
D
V
E
K
A
V
R
I
V
K
E
V
T
E
K
L
S
K
Y
---
E
V
P
P
E
K
L
V
I
H
E
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
73.08
33%
-60
- C1 -
4K8X
2
DPOL_THES9
A:
[586-666]
-----------------------------------------------------------------------------------
G
F
F
V
T
K
K
K
Y
A
V
I
D
E
-
E
G
K
I
T
T
R
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
A
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
T
E
K
L
S
K
Y
---
E
V
P
P
E
K
L
V
I
H
E
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
70.22
33%
-49
- C1 -
3A2F
-
DPOL_PYRFU
A:
[585-667]
---------------------------------------------------------------------------------
K
R
G
F
F
V
T
K
K
R
Y
A
V
I
D
E
E
G
K
V
I
T
R
-
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
T
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
I
Q
K
L
A
N
Y
---
E
I
P
P
E
K
L
A
I
Y
E
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
69.46
33%
-58
- C1 -
4AIL
2
DPOL_PYRFU
C:
[585-671]
---------------------------------------------------------------------------------
K
R
G
F
F
V
T
K
K
R
Y
A
V
I
D
E
E
G
K
V
I
T
R
-
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
T
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
I
Q
K
L
A
N
Y
---
E
I
P
P
E
K
L
A
I
Y
E
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
68.45
37%
-109
- C1 -
1TGO
-
DPOL_THEGO
A:
[586-649]
-----------------------------------------------------------------------------------
G
F
F
V
T
K
K
K
Y
A
V
I
D
E
E
D
K
I
-
T
T
R
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
A
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
T
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
68.07
37%
-118
- C1 -
1D5A
2
DPOL_DESST
A:
[586-649]
-----------------------------------------------------------------------------------
G
F
F
V
T
K
K
K
Y
A
V
I
D
E
E
D
K
I
-
T
T
R
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
A
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
T
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
67.57
37%
-110
- C1 -
2VWJ
2
DPOL_THEGO
A:
[586-649]
-----------------------------------------------------------------------------------
G
F
F
V
T
K
K
K
Y
A
V
I
D
E
E
D
K
I
-
T
T
R
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
A
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
T
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
67.39
37%
-103
- C1 -
1QQC
1
DPOL_DESST
A:
[586-661]
-----------------------------------------------------------------------------------
G
F
F
V
T
K
K
K
Y
A
V
I
D
E
E
D
K
I
-
T
T
R
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
A
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
T
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
67.33
37%
-87
- C1 -
2VWK
3
DPOL_THEGO
A:
[586-649]
-----------------------------------------------------------------------------------
G
F
F
V
T
K
K
K
Y
A
V
I
D
E
E
D
K
I
-
T
T
R
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
A
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
T
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
65.88
37%
-100
- C1 -
2XHB
-
DPOL_THEGO
A:
[586-649]
-----------------------------------------------------------------------------------
G
F
F
V
T
K
K
K
Y
A
V
I
D
E
E
D
K
I
-
T
T
R
G
L
--
E
I
V
R
R
D
W
S
E
I
A
K
E
T
Q
A
R
V
L
E
A
I
L
K
H
G
D
V
E
E
A
V
R
I
V
K
E
V
T
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
62.67
26%
-160
- C1 -
3LY1
9
?
A:
[33-132]
----------------------------------------------------------------------------------------------------------------------------------------------------
K
A
Q
A
A
A
R
D
A
V
V
K
A
N
R
Y
A
K
N
E
I
L
M
L
G
N
K
L
A
A
H
H
Q
V
E
A
P
S
I
L
L
T
A
G
S
S
E
G
I
R
A
A
I
E
A
Y
A
S
L
E
A
Q
L
--
V
I
P
E
L
T
Y
G
D
G
E
H
F
A
K
I
A
G
M
K
V
T
K
V
K
M
L
D
N
----
W
A
F
D
I
E
G
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
48.45
20%
27
- C1 -
3CL3
-
NEMO_HUMAN
D:
[193-251]
------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
H
S
V
Q
V
D
Q
L
R
M
Q
G
Q
S
V
E
A
A
L
R
M
E
R
Q
A
A
S
E
E
K
R
K
L
A
Q
L
Q
V
A
Y
H
Q
L
F
Q
E
Y
D
N
H
I
K
S
S
V
V
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
46.90
29%
65
- C1 -
3BPQ
-
RELB3_METJA
A:
[8-48]
----------------------------------------------------------------------------------------------------------------------------------
K
K
F
F
I
S
R
K
E
Y
E
K
I
E
E
I
L
D
I
G
L
A
K
A
M
E
E
T
K
D
D
E
L
L
T
Y
D
E
I
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
44.42
35%
-266
- C1 -
4WJE
-
?
A:
[28-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
L
N
G
A
K
V
E
G
N
V
E
V
V
V
A
A
P
F
A
F
L
P
T
L
Q
Q
K
L
R
K
D
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
44.21
13%
89
- C1 -
2K88
-
VATG_YEAST
A:
[1-60]
------------------------------------------------------------------------------------------------------------------------------
M
V
S
Q
K
N
G
I
A
T
L
L
Q
A
E
K
E
A
H
E
I
V
S
K
A
R
K
Y
R
Q
D
K
L
K
Q
A
K
T
D
A
A
K
E
I
D
S
Y
K
I
Q
K
D
K
E
L
K
E
F
E
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
42.61
13%
17
- C1 -
2W83
2
JIP4_HUMAN
C:
[1-67]
---------------------------------------------------------------------------------------------------------------------
A
M
D
P
E
F
M
G
R
E
V
E
N
L
I
L
E
N
T
Q
L
L
E
T
K
N
A
L
N
I
V
K
N
D
L
I
A
K
V
D
E
L
T
C
E
K
D
V
L
Q
G
E
L
E
A
V
K
Q
A
K
L
K
L
E
E
K
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
42.59
10%
-85
- C- -
4ZQA
-
A:
[2-87]
----------------------------------------------------------------------------------------------------------
S
N
A
G
T
L
Q
E
Y
Q
K
R
M
K
K
L
D
Q
Q
Y
R
E
R
I
R
N
A
E
L
F
L
Q
L
E
T
E
Q
V
E
R
N
Y
I
K
E
K
K
A
A
V
K
E
F
E
D
K
K
V
E
L
K
E
N
L
I
A
E
L
E
E
K
K
K
M
I
E
N
E
K
L
T
M
E
L
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
41.22
23%
34
- C1 -
4B7Y
-
MSL1_HUMAN
A:
[6-43]
---------------------------------------------------------------------------------------------------------------------------
G
A
S
S
Q
A
A
C
L
K
Q
I
L
L
L
Q
L
D
L
I
E
Q
Q
--
Q
Q
Q
L
Q
A
K
E
K
E
I
E
E
L
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
38.24
25%
174
- C- -
3M91
-
PUP_MYCTU
B:
[21-51]
---------------------------------------------------------------------------------------------------------------------------------------------------
S
T
A
A
G
Q
E
R
R
E
K
L
T
E
E
T
D
D
L
L
D
E
I
D
D
V
L
E
E
N
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
37.90
11%
-129
- C1 -
4PQ0
-
POB3_YEAST
A:
[161-237]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
Y
L
Y
P
L
D
N
A
F
F
F
L
T
K
P
T
L
Y
I
P
F
S
D
V
S
M
V
N
I
S
--------
R
T
F
D
L
E
V
V
L
R
S
N
--
R
G
S
T
T
F
A
N
I
S
K
E
E
Q
Q
L
L
E
Q
F
L
K
S
K
----