@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04690: (2016-06-07 )
MNDQSCVRIMTEWDIVAARQLGRNVAKELGFGTVDQARITTAISELARNIYLYAGKGQIGIEQVADRGKKGLKIIAEDQGPGIPDIRKVMEDGFSTSGGLGAGLPGVKRLMDEFSLNSVAGEGTEIQAIKWLR
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..-......20--.........30.---....-...40........50...----.-------------.---------.--------..60------.........70........80...--.--.------------------------.--..90...---..-------------.--..100-.........110----.----......120.......130.-----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
D
Q
S
C
V
R
I
M
TE
W
-
D
I
V
A
A
R
Q
---
L
G
R
N
V
A
K
E
LGFG---T
V
D
Q
-
A
R
I
T
T
A
I
S
E
L
A
RN
I
Y
L
Y
A----G-------------K---------G--------QI
G
-------
I
E
Q
V
A
D
RGKKG
L
K
I
I
AEDQGPG
I
P
--
D
--
I
------------------------
R
--
K
V
M
E
DGF---ST-------------S--GGL---GA
G
L
P
G
V
K
R
L
M
D
----
E
----FS
L
N
SVAGEGT
E
I
Q
A
I
KWLR-----
1
PsiBlast_PDB
79.85
27%
-71
- C1 -
1TIL
2
SP2AB_GEOSE
A:
[33-138]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
D
E
L
T
E
I
K
T
V
V
S
E
A
V
T
N
A
I
I
H
G
YNND
P
-------------
N
---------
G
--------
I
V
S
-------
I
S
V
I
I
E
D
G
V
V
H
L
T
V
--
R
D
E
G
V
G
I
P
--
D
--
I
------------------------
E
--
E
A
R
Q
P
L
F
---
T
T
-------------
K
--
P
E
L
ERS
G
M
G
F
T
I
M
E
N
F
M
D
----
E
----
V
I
V
E
S
E
V
N
K
G
T
T
V
Y
L
K
K
H
I
------
2
PsiBlast_PDB
78.19
27%
-76
- C1 -
1L0O
2
SP2AB_GEOSE
A:
[33-138]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
D
E
L
T
E
I
K
T
V
V
S
E
A
V
T
N
A
I
I
H
G
YNND
P
-------------
N
---------
G
--------
I
V
S
-------
I
S
V
I
I
E
D
G
V
V
H
L
T
V
--
R
D
E
G
V
G
I
P
--
D
--
I
------------------------
E
--
E
A
R
Q
P
L
F
---
T
T
-------------
K
--
P
E
L
ERS
G
M
G
F
T
I
M
E
N
F
M
D
----
E
----
V
I
V
E
S
E
V
N
K
G
T
T
V
Y
L
K
K
H
I
------
4
PsiBlast_PDB
76.08
28%
-90
- C1 -
1THN
1
SP2AB_GEOSE
A:
[33-132]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
D
E
L
T
E
I
K
T
V
V
S
E
A
V
T
N
A
I
I
H
G
YNND
P
-------------
N
---------
G
--------
I
V
S
-------
I
S
V
I
I
E
D
G
V
V
H
L
T
V
--
R
D
E
G
V
G
I
P
--
D
--
I
------------------------
E
--
E
A
R
Q
P
L
F
---
T
T
-------------
K
--
P
E
L
ERS
G
M
G
F
T
I
M
E
N
F
M
D
----
E
----
V
I
V
E
S
E
V
N
K
G
T
T
V
------------
48
HHSearch
76.02
26%
-96
- C1 -
2C2A
1
?
A:
[131-247]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
---
Y
I
D
P
-
T
R
I
R
Q
V
L
L
N
L
L
N
N
G
V
K
Y
S
----
K
-------------
K
---------
D
AP
D
K
----
Y
V
K
-------
V
I
L
D
E
--
K
D
G
G
V
L
I
I
V
E
D
N
G
I
G
I
P
--
D
HA
K
------------------------
D
--
R
I
F
E
Q
F
Y
---
R
V
D-----------------
T
---
G
L
G
L
A
I
T
K
E
I
V
E
----
L
H
G
G
R
I
W
V
E
S
E
V
G
K
G
S
R
F
F
V
W
I
P
K
------
55
HHSearch
74.49
26%
-85
- C1 -
1B3Q
-
CHEA_THEMA
A:
[103-247]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
-
E
E
I
G
E
P
L
L
H
L
L
R
N
A
I
D
H
G
----
I
EP
K
E
E
R
I
A
K
GKPP
I
---------
G
--------
T
L
I
-------
L
S
A
R
H
--
E
G
N
N
V
V
I
E
V
E
D
D
G
R
G
I
D
--
K
E
K
I
I
R
K
A
I
E
KGLIDE
S
K
A
A
T
LS
D
Q
E
I
L
N
--
F
L
F
V
P
G
F
---
S
-----------------------
G
V
G
M
D
V
V
K
N
V
V
E
----
S
L
N
G
S
M
G
I
E
S
E
K
D
K
G
T
K
V
T
I
R
L
P
L
------
39
HHSearch
74.30
24%
-96
- C1 -
4E01
3
BCKD_RAT
A:
[260-402]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
F
---
P
F
I
P
-
M
P
L
D
Y
I
L
P
E
L
L
K
N
A
M
R
A
T
----
M
-------------
E
S
H
LDTPY
N
V
P
--------
D
V
V
-------
I
T
I
A
N
--
N
D
V
D
L
I
I
R
I
S
D
R
G
G
G
I
A
--
H
KD
L
------------------------
D
--
R
V
M
D
Y
H
F
---
T
T
-------------
A
---
G
F
---
G
F
G
L
P
T
S
R
A
Y
A
E
----
Y
L
G
G
S
L
Q
L
Q
S
L
Q
G
I
G
T
D
V
Y
L
R
L
R
H
------
58
Fugue
74.03
21%
-110
- C1 -
4I5S
-
?
A:
[37-432]
N
N
N
Q
V
K
Q
L
N
A
K
V
R
S
L
I
T
G
H
Y
T
D
K
LKVEDNS
D
L
S
E
L
V
N
N
V
N
D
L
S
E
V
F
R
L
T
H
E
N
L
A
Q
E
K
N
R
L
T
S
I
L
S
YMT
D
G
V
L
A
T
D
RSGKITVIN
D
M
A
Q
K
Q
L
NVTREQALECNILDILDDDSY
T
Y
N
D
L
I
TK
T
P
E
I
V
L
T
RRDEYD
E
F
I
T
L
R
I
R
F
A
L
NRRESGFIS
G
L
I
A
V
L
H
DA
T
E
Q
E
K
E
E
R
E
R
R
L
F
V
S
N
V
S
H
E
L
R
T
P
L
T
S
V
K
S
Y
L
E
A
L
DDGALTESV
A
P
S
F
I
K
V
S
L
D
E
T
N
R
M
M
R
M
I
T
D
L
L
S
L
SRS
H
L
D
V
E
L
T
N
F
T
A
F
M
N
Y
I
L
D
R
F
-
D
Q
I
Q
S
Q
Q
STE
I
I
R
D
Y
P
D
K
S
V
W
I
---
E
I
D
T
-
D
K
M
T
Q
V
I
D
N
I
L
N
N
A
I
K
Y
S
P---
D
-------------
G
---------
G
--------
K
V
T
-------
I
T
M
Q
T
T
--
D
T
Q
L
I
L
S
I
S
D
Q
G
L
G
I
P
KK
D
--
L
------------------------
P
--
L
I
F
D
R
F
Y
---
R
V
-------------
D
--
K
A
R
---
G
L
G
L
A
I
A
K
E
I
V
K
Q
H
K
G
F
----
I
W
A
N
S
E
E
G
E
G
S
T
F
T
I
V
L
P
-------
45
HHSearch
73.68
24%
-103
* C1 *
4U7O
1
?
A:
[149-262]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
---
E
I
D
T
-
D
K
F
T
Q
V
L
D
N
I
M
N
N
A
I
K
Y
S
----
P
D------------
G
---------
G
--------
V
V
T
-------
C
R
L
L
E
--
T
H
N
Q
V
I
I
S
I
S
D
Q
G
L
G
I
P
--
R
AD
L
------------------------
G
--
H
V
F
D
R
F
F
---
R
V
DK-----------
Q
--
G
G
T
---
G
L
G
L
A
I
S
K
E
V
V
Q
----
M
L
G
G
R
I
W
V
D
S
V
E
G
K
G
S
T
F
Y
I
S
L
P
Y
------
41
HHSearch
72.78
25%
-94
- C1 -
2E0A
2
PDK4_HUMAN
A:
[221-349]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
H
I
---
V
Y
V
P
-
S
H
L
H
H
M
L
F
E
L
F
K
N
A
M
R
A
T
----
V
-------------
E
---------
H
Q
E
NQP
S
L
T
P
I
E
-------
V
I
V
V
L
--
G
K
E
D
L
T
I
K
I
S
D
R
G
G
G
V
P
--
L
RI
I
------------------------
D
--
R
L
F
S
Y
T
Y
---
S
T
APTPNAP------
L
--
A
G
F
---
G
Y
G
L
P
I
S
R
L
Y
A
K
----
Y
FQ
G
D
L
N
L
Y
S
L
S
G
Y
G
T
D
A
I
I
Y
L
K
A
------
56
HHSearch
72.74
24%
-92
- C1 -
1TH8
2
SP2AB_GEOSE
A:
[16-138]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
F
A
R
V
---
T
V
A
A
F
V
A
Q
L
D
P
T
---
M
D
E
L
-
T
E
I
K
T
V
V
S
E
A
V
T
N
A
I
I
H
G
----
Y
NNDP---------
N
---------
G
--------
I
V
S
-------
I
S
V
I
I
--
E
D
G
V
V
H
L
T
V
R
D
E
G
V
G
I
P
--
D
--
I
------------------------
E
--
E
A
R
Q
P
--------------------
L
--
E
R
S
---
G
M
G
F
T
I
M
E
N
F
M
D
----
E
----
V
I
V
E
S
E
V
N
K
G
T
T
V
Y
L
K
K
H
G
------
57
Fugue
72.63
20%
-79
- C1 -
1L0O
2
SP2AB_GEOSE
A:
[1-141]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
N
E
M
H
L
Q
F
S
A
R
S
E
N
E
S
F
A
R
V
---
T
V
A
A
F
V
A
Q
L
D
P
T
---
M
D
E
L
-
T
E
I
K
T
V
V
S
E
A
V
T
N
A
I
I
H
G
YN--
N
-------------
D
---------
P
--------
N
G
I
-------
V
S
I
S
V
I
I
E
D
G
V
V
H
L
T
V
R
D
E
G
V
G
I
P
--
D
--
I
------------------------
E
--
E
A
R
Q
P
L
F
---
T
T
KPE----------
L
--
E
R
S
---
G
M
G
F
T
I
M
E
N
F
M
D
----
E
----
V
I
V
E
S
E
V
N
K
G
T
T
V
Y
L
K
K
H
I
V
K
S---
53
HHSearch
72.59
26%
-91
- C1 -
3SL2
2
A:
[34-151]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
Y
V
---
E
I
D
Q
-
D
K
I
T
Q
V
L
D
N
I
I
S
N
A
L
K
Y
S
----
P
E------------
G
---------
G
--------
H
V
T
-------
F
S
I
D
V
N
E
E
E
E
L
L
Y
I
S
V
K
D
E
G
I
G
I
P
--
K
KD
V
------------------------
E
--
K
V
F
D
R
F
Y
---
R
V
D------------
L
--
G
G
T
---
G
L
G
L
A
I
A
K
E
M
V
Q
----
A
H
G
G
D
I
W
A
D
S
I
E
G
K
G
T
T
I
T
F
T
L
P
Y
------
3
PsiBlast_PDB
72.59
28%
-80
- C1 -
1TH8
2
SP2AB_GEOSE
A:
[33-132]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
D
E
L
T
E
I
K
T
V
V
S
E
A
V
T
N
A
I
I
H
G
YNND
P
-------------
N
---------
G
--------
I
V
S
-------
I
S
V
I
I
E
D
G
V
V
H
L
T
V
--
R
D
E
G
V
G
I
P
--
D
--
I
------------------------
E
--
E
A
R
Q
P
-------------------------
L
ERS
G
M
G
F
T
I
M
E
N
F
M
D
----
E
----
V
I
V
E
S
E
V
N
K
G
T
T
V
------------
46
HHSearch
71.72
22%
-63
- C1 -
4Q20
-
DIVL_CAUCR
A:
[648-756]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
I
---
R
G
D
G
-
K
R
L
A
Q
T
L
D
H
L
V
E
N
A
L
R
Q
T
----
P
P------------
G
---------
G
--------
R
V
T
-------
L
S
A
R
R
--
A
L
G
E
V
R
L
D
V
S
D
T
G
R
G
V
P
--
F
HV
Q
------------------------
A
--
H
I
F
D
R
F
V
---
G
R
D------------
R
--
G
G
P
---
G
L
G
L
A
L
V
K
A
L
V
E
----
L
H
G
G
W
V
A
L
E
S
E
P
G
N
G
S
T
F
T
C
H
L
P
E
------
8
PsiBlast_PDB
71.20
26%
-90
- C1 -
1TID
2
SP2AB_GEOSE
A:
[38-132]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
I
K
T
V
V
S
E
A
V
T
N
A
I
I
H
G
YNND
P
-------------
N
---------
G
--------
I
V
S
-------
I
S
V
I
I
E
D
G
V
V
H
L
T
V
--
R
D
E
G
V
G
I
P
--
D
--
I
------------------------
E
--
E
A
R
Q
P
L
F
---
T
T
-------------
K
--
P
E
L
ERS
G
M
G
F
T
I
M
E
N
F
M
D
----
E
----
V
I
V
E
S
E
V
N
K
G
T
T
V
------------
37
HHSearch
70.95
23%
-84
- C1 -
2Q8G
-
PDK1_HUMAN
A:
[234-365]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
Q
V
---
V
Y
V
P
-
S
H
L
Y
H
M
V
F
E
L
F
K
N
A
M
R
A
T
----
M
-------------
E
H
H
ANRG
V
Y
-
P
--------
P
I
Q
-------
V
H
V
T
L
--
G
N
E
D
L
T
V
K
M
S
D
R
G
G
G
V
P
--
L
RK
I
------------------------
D
--
R
L
F
N
Y
M
Y
---
S
T
APRPRVETSRAVP
L
--
A
G
F
---
G
Y
G
L
P
I
S
R
L
Y
A
Q
----
Y
FQ
G
D
L
K
L
Y
S
L
E
G
Y
G
T
D
A
V
I
Y
I
K
A
------
36
HHSearch
70.30
25%
-99
- C1 -
4I5S
-
?
A:
[319-432]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
W
I
---
E
I
D
T
-
D
K
M
T
Q
V
I
D
N
I
L
N
N
A
I
K
Y
S
----
P
D------------
G
---------
G
--------
K
V
T
-------
I
T
M
Q
T
--
T
D
T
Q
L
I
L
S
I
S
D
Q
G
L
G
I
P
--
K
KD
L
------------------------
P
--
L
I
F
D
R
F
Y
---
R
V
DKAR------------------
G
L
G
L
A
I
A
K
E
I
V
K
----
Q
H
K
G
F
I
W
A
N
S
E
E
G
E
G
S
T
F
T
I
V
L
P
-------
62
Fugue
69.84
20%
-78
- C1 -
1GKZ
8
BCKD_RAT
A:
[38-378]
---------------------------------------------------------------------------VRLTPT
M
M
L
Y
SGRSQDG
S
H
L
L
K
S
G
R
Y
L
Q
Q
E
L
P
V
R
I
A
H
R
I
K
G
F
R
S
LP
F
I
I
G
C
N
P
T
I
L
H
V
H
E
L
Y
I
R
A
F
Q
K
L
T
D
FPPIKD
Q
A
D
E
A
Q
Y
C
Q
L
V
R
Q
L
L
D
D
H
K
D
V
V
T
L
L
A
E
G
L
R
ESRKHIEDEK
L
V
R
Y
F
L
D
K
T
L
T
S
R
L
G
I
R
M
L
A
T
H
H
L
A
L
HEDKPDFVGIICT
R
L
S
P
K
K
I
I
E
K
W
V
D
F
A
R
R
L
C
E
H
K
Y
-
G
N
A
P
R
V
R
---
I
N
G
H
V
A
A
R
F
P
F
------
I
P
-
M
P
L
D
Y
I
L
P
E
L
L
K
N
A
M
R
A
T
----
M
-------------
E
---------
S
--------
H
L
D
TPY
N
V
P
D
V
V
I
T
I
A
N
N
D
V
D
L
I
I
R
I
S
D
R
G
G
G
I
A
--
H
KD
L
------------------------
D
--
R
V
M
D
Y
H
F
---
T
T
-------------
A
PM
H
G
F
---
G
F
G
L
P
T
S
R
A
Y
A
E
Y
L
G
G
S
----
L
Q
L
Q
S
L
Q
G
I
G
T
D
V
Y
L
R
L
R
H
I
DGREE
60
Fugue
68.34
18%
-78
- C1 -
1ID0
2
A:
[1-146]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R
E
L
H
P
V
A
P
L
L
D
N
L
T
S
A
-
L
N
K
V
Y
Q
R
---
K
G
V
N
I
S
L
D
I
S
P
E
I
S
F
V
G
E
Q
-
N
D
F
V
E
V
M
G
N
V
L
D
N
A
C
K
Y
C
----
L
-------------
E
--------------------
F
-------
V
E
I
S
A
R
Q
T
D
E
H
L
Y
I
V
V
E
D
D
G
P
G
I
P
--
L
--
S
------------------------
K
RE
V
I
F
D
R
G
Q
RVD
T
L
-------------
R
--
P
G
Q
---
G
V
G
L
A
V
A
R
E
I
T
E
Q
Y
E
G
K
----
I
V
A
G
E
S
M
L
G
G
A
R
M
E
V
I
F
G
R
Q
H----
38
HHSearch
68.25
24%
-88
- C1 -
1Y8O
3
PDK3_HUMAN
A:
[244-373]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
Q
V
---
V
Y
V
P
-
S
H
L
F
H
M
L
F
E
L
F
K
N
S
M
R
A
T
----
V
-------------
E
L
Y
E
DRKE--
G
--------
Y
P
A
-------
V
K
T
L
V
T
L
G
K
E
D
L
S
I
K
I
S
D
L
G
G
G
V
P
--
L
RK
I
------------------------
D
--
R
L
F
N
Y
M
Y
---
S
---------------PL--
F
---
G
Y
G
L
P
I
S
R
L
Y
A
R
----
Y
FQ
G
D
L
K
L
Y
S
M
E
G
V
G
T
D
A
V
I
Y
L
K
A
------