@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04790: (2016-06-08 )
MDNKELQKLTEDISETYFKKPFRHQALFNDRLKTTGGRYLLTSHNIELNRKYLIEHGREELIGIIKHELCHYHLHLEGKGYKHRDRDFRMLLQQVNAPRFCTPLKKKAENKKTYMYICTTCGQQYIKKRAMNPDRYRCGKCRGKIKRIFS
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..------.......10......-------------..-20..-----.-.---....30...--------.....40........-50-------------........60..--..-...----.--70.---.......80.......---------.90----........100--------........110.......120.......-----130-----.------.--.....--..140--.......150---------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
D
------
N
K
E
L
Q
K
L
T
E
D
I
S
E
T
Y
-------------
F
K-KP
F
R
-----
H
-
Q
---
A
L
F
N
DRLKT--------TG
G
R
Y
L
L
T
SH
N
I
E
L
N
-
R
K
-------------
Y
L
I
EH
G
R
E
E
L
I
G
--
I
I
-
K
H
E----
L
--
C
H
Y
---
H
L
H
LEGKGYKHR
D
R
D
F
---------
R
M
L
----
L
Q
QVNAPRFC---------T
P
L
K
K
KAENK
K
T
Y
M
Y
I
C
T
T
C
G
Q
Q
Y
I
K
K
R-----A-------M------N--P
D
R
Y
R
--
C
G
K
C
R
--
G
K
I
K
R
IFS-----------------
14
PsiBlast_PDB
86.02
28%
0
- C- -
3D7T
1
A:
[53-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
A
S
-------------
V
M
-
T
Q
L
R
-----
H
-
S
NLV
Q
L
L
G
V
I
V
E
E
--------
K
G
G
L
Y
I
V
T
E
Y
M
A
K
G
S
L
V
D
-------------
Y
L
R
S
R
G
R
S
V
L
G
G
D
C
L
L
-
K
F
S
----
L
D
V
C
E
A
---
M
E
Y
L
E
G
N
N
F
V
H
R
D
L
A
A
---------
R
N
V
----
L
------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
64.18
28%
-130
- C3 -
1K9A
-
CSK_RAT
A:
[234-327]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
A
S
-------------
V
M
-
T
Q
L
R
-----
H
-
S
NLV
Q
L
L
G
V
I
V
E
E
--------
K
G
G
L
Y
I
V
T
E
Y
M
A
K
G
S
L
V
D
-------------
Y
L
R
S
R
G
R
S
V
L
G
G
D
C
L
L
-
K
F
S
----
L
D
V
C
E
A
---
M
E
Y
L
E
G
N
N
F
V
H
R
D
L
A
A
---------
R
N
V
----
L
------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
63.06
28%
-130
- C3 -
3D7U
-
CSK_HUMAN
A:
[234-327]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
A
S
-------------
V
M
-
T
Q
L
R
-----
H
-
S
NLV
Q
L
L
G
V
I
V
E
E
--------
K
G
G
L
Y
I
V
T
E
Y
M
A
K
G
S
L
V
D
-------------
Y
L
R
S
R
G
R
S
V
L
G
G
D
C
L
L
-
K
F
S
----
L
D
V
C
E
A
---
M
E
Y
L
E
G
N
N
F
V
H
R
D
L
A
A
---------
R
N
V
----
L
------------------------------------------------------------------------------------------------------------
25
Fugue
61.63
18%
-2
- C2 -
1ZWT
-
BFPA_ECO27
A:
[1-158]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
QSASDS
N
K
S
Q
N
A
I
S
E
V
M
S
A
T
S
-------------
A
I
-
N
G
L
Y
IGQTS
Y
-
S
---
G
L
D
S
T
I
L
L
N
--------
T
S
A
--
I
P
D
N
Y
K
D
T
T
N
-
K
K
-------------
I
T
N
P
F
G
G
E
L
N
V
G
--
P
A
N
N
N
T
----
A
--
F
G
Y
---
Y
L
T
L
T
R
L
D
-
K
A
A
C
V
S
L
---------
A
T
L
----
N
L
G
T
S
A
K
G
Y
G
---------
V
N
I
S
G
E
N
N
I
T
S
-----
F
G
N
S
A
D
Q
A
A
K
S
T
-----
A
-------
I
------
T
--
P
A
E
A
A
T
A
C
K
N
T
D
--
S
T
N
K
V
T
Y
F
M
K---------------
31
HHSearch
61.12
22%
-132
- C2 -
4QHJ
4
Y1213_METJA
A:
[3-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
------
R
K
I
L
N
E
I
L
S
N
T
I
N
E
L
-------------
N
L
N
D
K
K
A
-----
N
I
K
---
I
K
I
K
-
P
L
K
R
--------
K
I
A
S
I
S
L
T
N
K
T
I
Y
I
N
-
K
N
-------------
I
L
P
Y
L
S
D
E
E
I
R
F
--
I
L
-
A
H
E
----
L
--
L
H
L
---
K
Y
G
------
K
Y
H
I
N
E
F
---------
E
E
E
----
L
L
F
L
F
P
-------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
58.62
28%
-128
- C3 -
1BYG
1
A:
[62-161]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
A
S
-------------
V
M
-
T
Q
L
R
-----
H
-
S
NLV
Q
L
L
G
V
I
V
E
E
----------
G
L
Y
I
V
T
E
Y
M
A
K
G
S
L
V
D
-------------
Y
L
R
S
R
G
R
S
V
L
G
G
D
C
L
L
-
K
F
S
----
L
D
V
C
E
A
---
M
E
Y
L
E
G
N
N
F
V
H
R
D
L
A
A
---------
R
N
V
----
L
------------------------------------------------------------------------------------------------------------
32
HHSearch
55.11
17%
-152
- C2 -
4JIX
10
Y123_METJA
A:
[8-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
------
K
K
D
I
K
D
I
V
N
E
I
L
I
S
L
-------------
N
I
-
N
-
E
S
-----
I
-
N
---
I
E
I
K
-
P
M
K
Q
--------
K
I
A
S
F
S
F
K
T
K
T
L
R
L
N
-
K
Y
-------------
V
V
E
N
F
D
E
E
L
L
H
Y
--
I
I
-
L
H
E
----
L
--
I
H
F
---
K
I
-----
K
S
I
N
H
G
I
K
F
---------
E
N
E
----
L
R
N
Y
F
S
-------------------------------------------------------------------------------------------------------
33
HHSearch
53.59
19%
-144
- C2 -
4JIU
2
?
A:
[3-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
L
L
E
H
A
K
D
I
--------------
L
G
-
Y
Q
R
P
-----
V
-
K
---
V
R
I
R
-
P
L
K
M
--------
S
I
A
R
V
S
F
K
Y
G
T
I
T
L
D
-
P
A
-------------
V
-
L
N
L
E
E
E
E
M
F
Y
--
I
L
-
I
H
E
----
L
--
A
H
L
---
K
A
E
-----
T
S
Y
H
S
S
S
F
---------
W
R
E
----
V
E
K
V
F
P
-------------------------------------------------------------------------------------------------------
26
Fugue
51.23
17%
-9
- C4 -
4ZLH
1
LAPB_ECO57
A:
[17-339]
G
T
V
E
A
H
L
T
L
G
N
L
F
R
S
R
GE
V
D
R
A
I
R
I
H
Q
T
L
M
E
SASLT
Y
E
Q
R
L
L
A
I
Q
Q
L
G
R
D
Y
M
A
A
GL
Y
D
R
A
E
D
M
F
N
Q
L
T
DETDF
R
I
G
A
L
Q
Q
L
L
Q
I
Y
Q
A
T
SE
W
Q
K
A
I
D
V
A
E
R
L
V
K
L
GKDKQ
R
V
E
I
A
H
F
Y
C
E
L
A
L
Q
H
M
A
SDD
L
D
R
A
M
T
L
L
K
K
G
A
A
A
DKNS
A
R
V
S
I
M
M
G
R
V
F
M
A
K
GE
Y
A
K
A
V
E
S
L
Q
RVI
S
Q
------
D
R
E
L
V
S
E
T
L
E
M
L
Q
T
C
-------------
Y
Q
-
Q
L
-
G
-----
K
-
T
---
A
E
W
A
E
F
L
Q
R
--------
A
V
E
E
N
T
G
A
D
A
E
L
M
L
A
-
D
I
-------------
I
E
A
R
D
G
S
E
A
A
Q
V
--
Y
I
-
T
R
Q
----
L
--
Q
R
H
PT
M
R
V
F
H
K
L
M
D
Y
H
L
N
E
A
E
E
---------
G
R
A
----
K
E
S
L
M
V
L
R
D
M
---------
V
G
E
K
V
R
S
K
P
R
----
Y
R
C
Q
K
C
G
F
T
A
------------------------
Y
--
T
L
Y
W
H
--
C
P
S
C
R
AW
S
T
I
K
P
I
R
G
LDGL-------------
23
Fugue
50.83
18%
-67
- C2 -
1TDP
-
CB2I_CARML
A:
[1-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
-------
I
K
S
Q
T
L
Y
L
N
L
S
E
A
Y
-------------
K
D
-
P
E
V
K
-----
A
-
N
---
E
F
L
S
K
L
V
V
Q
--------
C
A
G
K
L
T
A
S
N
S
------------------------
E
N
S
Y
I
E
V
I
S
--
L
L
-
S
R
G
----
I
--
S
S
Y
---
Y
L
S
------
H
K
R
I
I
P
S
---------
S
M
L
-----------
T
I
Y
---------
T
Q
I
Q
K
D
I
K
N
G
N
--------
I
D
T
E
K
L
R
K
Y
-----
E
-------
I
------
A
--
K
G
L
M
S
-----------
V
P
Y
I
Y
F
-----------------
5
PsiBlast_PDB
45.45
37%
-167
- C4 -
1SPW
-
RUBR_DESGI
A:
[3-29]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
V
C
T
V
C
G
Y
E
Y
D
P
A
F
-----
E
-------
D
------
L
--
P
D
D
W
A
--
C
P
V
C
----------------------------
1
PsiBlast_PDB
43.77
35%
-144
* C5 *
4PON
-
?
A:
[124-191]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
L
L
S
--
I
M
-
K
D
E
G
L
I
V
L
--
V
V
Y
---
H
G
--------
N
D
V
L
D
F
C
R
N
LDQQA
A
R
V
L
T
Y
G
F
I
N
Q
Q
N
D
P
P
F
I
---------
V
A
I
E
K
K
A
Q
----------------------------------------------------------------------------------
27
Fugue
43.69
12%
-49
- C2 -
2NTE
5
BARD1_HUMAN
A:
[1-210]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------G
P
L
V
L
I
G
S
GLS
S
E
Q
------
Q
K
M
L
S
E
L
A
V
I
L
K
A
K
K
Y
TE----------
F
D
-
S
T
V
T
-----
H
-
V
---
V
V
P
G
D
A
V
Q
S
T
L
K
C
M
L
G
I
L
N
G
C
W
I
L
K
F
E
W
V
K
A
C
-
L
R
R
KVCEQEEKYEIP
E
G
P
R
R
S
R
L
N
R
E
Q
--
L
L
-
P
K
L
----
F
--
D
G
C
---
Y
F
Y
L
W
G
T
F
K
H
H
P
K
D
N
L
---------
I
K
L
----
V
T
A
G
G
G
Q
I
L
S
---------
R
K
P
K
P
D
S
D
V
T
Q
T
I
N
T
V
A
Y
H
A
R
P
D
S
D
Q
R
F
-----
C
TQYIIYE
D
------
L
--
C
N
Y
H
P
--
E
R
V
R
Q
--
G
K
V
W
K
A
P
S
S
W
F
I
D
C
V
M
S
FELLPLDS
50
HHSearch
42.83
33%
-92
- C4 -
1E8J
-
RUBR_DESGI
A:
[3-45]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
V
C
T
V
C
G
Y
E
Y
D
P
A
K
GDPDS
G
-------
I
KPGTKF
E
DL
P
D
D
W
A
--
C
P
V
C
G
--
A
S
-----------------------
22
Fugue
41.61
13%
-48
- C4 -
2LCQ
1
NOB1_PYRHO
A:
[5-165]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
------
R
N
L
K
K
T
L
V
L
D
S
S
V
F
I
Q
GID
I
E
G
Y
T
T
P
S
V
V
E
-
E
I
K
D
-----
R
-
E
---
S
K
I
F
L
E
S
L
I
--------
S
A
G
K
V
K
I
A
E
P
S
K
E
S
I
-
D
R
-------------
I
I
Q
V
A
K
E
T
G
E
V
N
--
E
L
-
S
K
A
----
D
--
I
E
V
---
L
A
L
A
Y
E
L
K
G
E
I
F
S
D
D
Y
---------
N
V
Q
----
N
I
A
S
L
L
G
L
R
F
---------
R
T
L
K
R
G
I
K
K
V
I
K
W
R
Y
V
C
I
G
C
G
R
K
F
---------
S
-------
T
------
L
--
P
P
G
G
V
--
C
P
D
C
G
--
S
K
V
K
L
I
P
R
KR---------------
41
HHSearch
40.42
22%
-76
- C4 -
2LCQ
1
NOB1_PYRHO
A:
[103-161]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
Y
N
V
---------
Q
N
I
----
A
S
L
L
G
L
R
-
F
R
---------
T
L
K
R
G
I
-
K
K
V
I
K
W
R
Y
V
C
I
G
C
G
R
K
F
S
T
L
------------------------
P
P
G
G
V
--
C
P
D
C
G
--
S
K
V
K
L
I
-------------------
2
PsiBlast_PDB
40.02
35%
-113
- C5 -
4POO
-
?
A:
[130-196]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
L
L
S
--
I
M
-
K
D
E
G
L
I
V
L
--
V
V
Y
---
H
---
E
G
K
A
E
K
N
D
V
L
D
F
C
R
N
LDQQA
A
R
V
L
T
Y
G
F
I
N
Q
Q
N
D
P
P
F
I
---------
V
A
I
E
K
K
A
-----------------------------------------------------------------------------------
34
HHSearch
39.84
19%
-232
- C2 -
3CQB
2
HTPX_VIBPA
A:
[65-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
L
V
A
V
S
-
T
G
-------------
L
L
H
N
M
T
R
D
E
A
E
A
--
V
L
-
A
H
E
----
V
--
S
H
I
---
A
--------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
37.98
30%
47
- C2 -
3C8W
1
?
A:
[139-208]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
T
L
I
G
--
I
L
-
K
Y
--------
G
S
I
---
D
I
A
I
A
T
M
G
Y
K
H
R
P
L
D
A
---------
E
K
V
----
L
E
S
V
K
K
P
V
F
L
L
K
N
I
P
N
VDG
T
P
L
V
N
Q
L
--
T
K
T
Y
L
T
D
I
T
V
K
G
A
W
-------------------------------------------------------------------
39
HHSearch
37.78
21%
-244
- C2 -
4IL3
1
?
A:
[273-313]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
R
I
V
L
F
-
D
T
-------------
L
V
N
S
N
S
T
D
E
I
T
A
--
V
L
-
A
H
E
----
I
--
G
H
W
---
Q
K
N
------------------------------------------------------------------------------------------------------------------------------------------