@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04810: (2016-06-08 )
MITIYTSKGIKHKVQSVIKTHGTNNVYEICDIQKIYILKNDLGQANGLLQHDKATDQYLIHINENLQHQQFVIAHELGHYFLHKRLNTFKVVNCSKVLKDKLEHQASLFASELILTDKMLNEALPYIQGFSKEQIAAYFNVPSFVTDYKLSQIGSFSNRIYSHEISAFG
Atome Classification :
(20 SA)
-------------------------------------------------------------------.........10..------.......20..----......-30----------------------------..-......-40---........--.50......---.---------------.60.......--.70......---------..80----.......----..90--.--.-.---..--------.-..100...---.-...110---..-.....120...-----.--.-..130---..-.......140-.--.......-150..---.....160-------.......-------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------
M
I
T
I
YTSKG
I
-
K
H
------
K
V
Q
S
V
I
K
THGT----NN
V
Y
E
I
-CD----------------------------
I
Q
-
K
I
Y
I
L
K-N----DLGQANGL--LQHDKAT
D
Q
---
Y
---------------
L
I
HINENL
Q
H
--
Q
Q
F
V
I
A
H
E
L
---------
G
H
Y
-----
F
L
H
KRLN----
T
F
K
V--V--
N
-
C
---
S
K
--------
V
-
L
K
D
K
L
E
H
Q
---
A
-
S
L
F
A
S
E
---
L
I
-
L
T
D
K
M
L
N
E
A
L
P
-----
Y
--
I
-QGF-----
S
K
-
E
Q
I
A
A
Y
FNV--
P
--
S
F
V
T
D
Y
K
-
L
S
Q
I
G
---
S
F
S
N
R
I
Y
S
-------
H
EISAFG-------------------------------------------------------------------------
22
HHSearch
78.84
18%
-133
- C5 -
3DTE
-
IRRE_DEIDV
A:
[8-175]
----------------------------------------------------------------------
P
T
A
L
A
A
A
-
K
A
------
R
M
R
E
L
A
A
S
Y
G
A
G
LPG
R
D
T
H
S
L
-
M
H
----------------------------
G
L
D
G
I
T
L
T
F
-
M
----
P
M
G
Q
R
D
G
A
--
Y
D
--
P
E
--
H
---
H
---------------
V
I
L
I
N
S
Q
V
R
P
E
R
Q
R
F
T
L
A
H
E
I
---------
S
H
A
-----
L
L
L
G
D
D
D
----
L
L
S
D
L
H
D
--
E
Y
E
---
G
D
--------
R
-
L
E
Q
V
I
E
T
L
---
C
-
N
V
G
A
A
A
---
L
L
-
M
P
A
E
L
I
D
D
L
L
T
-----
R
FG
P
-
T
G
R
-----
A
L
-
A
E
L
A
R
R
A
D
V
--
S
--
A
T
S
A
L
Y
A
-
L
A
E
R
T
--------------------------------------------------------------------------------------------------
44
Fugue
67.26
16%
-124
* C6 *
1GUK
-
GSTA4_MOUSE
A:
[5-219]
------------------------------------------------------------------P
K
L
Y
Y
F
N
G
R
G
R
-
M
E
------
S
I
R
W
L
L
A
A
A
G
V
----
E
F
E
E
E
F
-
L
E
T
R
E
Q
Y
E
K
M
Q
K
D
GHLLFGQVP
L
V
E
I
DGMM
L
T
-
Q
T
R
A
I
L
-
S
----
Y
L
A
A
K
Y
N
L
--
Y
G
K
D
L
K
E
R
V
---
R
---------------
I
D
M
Y
A
D
G
T
Q
D
--
L
M
M
M
I
A
V
A
P
FKTP
K
E
K
E
E
S
Y
D
-----
L
I
L
S
R
A
K
----
T
R
Y
F
--
P
--
V
-
F
---
E
K
--------
I
-
L
K
D
H
--
G
E
---
A
-
F
L
V
G
N
Q
---
L
S
-
W
A
D
I
Q
L
L
E
A
I
L
-----
M
--
V
-
E
E
L
-----
S
A
-
P
V
L
S
D
F
P
L
L
--
Q
--
A
F
K
T
R
I
S
N
I
P
T
I
K
---
K
F
L
Q
P
G
S
Q
-------
R
-
K
P
P
P
D
G
P
Y
V
E
V
V
R
I
V---------------------------------------------------------------
43
Fugue
62.35
13%
-90
- C5 -
3DTE
-
IRRE_DEIDV
A:
[8-263]
-------------------------------------------------------------------
P
T
A
L
A
A
A
K
A
R
M
R
E
------
L
A
A
S
Y
G
A
G
L
P
G
----
R
D
T
H
S
L
M
H
G
----------------------------
L
D
-
G
I
T
L
T
F
M
P
M
---
G
----
Q
R
D
--
G
A
Y
D
P
E
H
H
V
---
I
---------------
L
I
N
S
Q
V
R
P
E
R
--
Q
R
F
T
L
A
H
E
I
---------
S
H
A
-----
L
L
L
G
D
D
D
----
L
L
S
D
--
L
--
H
-
D
E
YE
G
D
--------
R
-
L
E
Q
V
I
E
T
L
---
C
-
N
V
G
A
A
A
---
L
L
M
P
A
E
L
I
D
D
L
L
T
R
-----
F
--
G
-
P
T
G
-----
R
A
L
A
E
L
A
R
R
A
D
V
--
S
--
A
T
S
A
L
Y
A
-
L
A
E
R
T
---
A
P
P
V
I
Y
A
V
-------
C
A
L
S
R
A
K
E
L
T
V
R
A
S
S
A
S
AGVK
Y
S
L
S
A
G
T
P
V
P
DDH
P
A
A
L
A
L
D
T
R
L
P
L
A
Q
DSYVPFRSG
R
R
M
P
A
Y
V
D
A
F
P
E
RQ
R
V
L
V
S
F
A
L
P
51
Fugue
59.75
19%
-79
* C4 *
4QDJ
2
CHLM_SYNY3
A:
[2-230]
---------------------------------------------TNAALD
D
K
T
I
V
R
D
Y
F
N
S
T
G
F
D
R
W
R
R
I
Y
G
D
G
Q
V
-
N
F
------
V
Q
K
D
I
R
V
G
H
Q
Q
----
T
V
D
S
V
V
-
A
W
----------------------------
L
V
-
A
D
G
N
L
P
-
G
L
L
V
C
D
A
G
C
G
V
G
S
--
L
S
I
P
L
A
Q
A
G
AL
V
Y
---------------
G
S
D
I
S
E
K
M
V
G
--
E
A
Q
Q
K
A
Q
E
V
---------
L
A
Y
GN
Q
P
T
F
M
T
Q
D
L
A
Q
L
G
G
K
Y
D
T
--
V
--
I
-
C
---
L
D
--------
V
-
L
I
H
Y
P
T
E
E
---
A
-
S
A
M
I
S
H
---
L
A
S
L
A
D
R
R
L
I
L
S
F
A
-----
P
--
K
-
R
A
Y
-----
Q
H
-
K
E
A
D
I
R
K
I
L
--
G
--
D
--
N
G
F
S
-
I
A
R
T
G
---
M
T
S
T
R
F
Y
Y
-------
S
R
I
L
E
A
V
R
S-----------------------------------------------------------------------
4
PsiBlast_PDB
57.29
27%
-154
- C5 -
3H2K
2
?
A:
[234-310]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------
G
S
Y
-----
A
I
V
A
M
Q
H
----
T
Y
K
N
--
I
YL
E
-
P
---
G
Q
--------
V
-
F
Q
D
P
W
A
A
K
---
V
E
P
L
F
P
G
K
---
Q
S
-
L
T
D
M
F
L
N
D
T
L
P
-----
S
--
I
------------
D
K
V
K
S
Y
F
Q
---
P
--
G
F
Y
S
D
F
P
-
S
N
P
A
N
---
P
F
---------------------------------------------------------------------------------------------
1
PsiBlast_PDB
56.35
27%
-158
- C5 -
3H2I
-
?
A:
[234-310]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------
G
S
Y
-----
A
I
V
A
M
Q
H
----
T
Y
K
N
--
I
YL
E
-
P
---
G
Q
--------
V
-
F
Q
D
P
W
A
A
K
---
V
E
P
L
F
P
G
K
---
Q
S
-
L
T
D
M
F
L
N
D
T
L
P
-----
S
--
I
------------
D
K
V
K
S
Y
F
Q
---
P
--
G
F
Y
S
D
F
P
-
S
N
P
A
N
---
P
F
---------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.20
27%
-150
- C5 -
3H2J
-
?
A:
[234-310]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------
G
S
Y
-----
A
I
V
A
M
Q
H
----
T
Y
K
N
--
I
YL
E
-
P
---
G
Q
--------
V
-
F
Q
D
P
W
A
A
K
---
V
E
P
L
F
P
G
K
---
Q
S
-
L
T
D
M
F
L
N
D
T
L
P
-----
S
--
I
------------
D
K
V
K
S
Y
F
Q
---
P
--
G
F
Y
S
D
F
P
-
S
N
P
A
N
---
P
F
---------------------------------------------------------------------------------------------
2
PsiBlast_PDB
55.54
27%
-157
- C5 -
3H2G
-
?
A:
[234-310]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------
G
S
Y
-----
A
I
V
A
M
Q
H
----
T
Y
K
N
--
I
YL
E
-
P
---
G
Q
--------
V
-
F
Q
D
P
W
A
A
K
---
V
E
P
L
F
P
G
K
---
Q
S
-
L
T
D
M
F
L
N
D
T
L
P
-----
S
--
I
------------
D
K
V
K
S
Y
F
Q
---
P
--
G
F
Y
S
D
F
P
-
S
N
P
A
N
---
P
F
---------------------------------------------------------------------------------------------
5
PsiBlast_PDB
53.60
27%
-155
- C5 -
3H2H
-
?
A:
[234-310]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------
G
S
Y
-----
A
I
V
A
M
Q
H
----
T
Y
K
N
--
I
YL
E
-
P
---
G
Q
--------
V
-
F
Q
D
P
W
A
A
K
---
V
E
P
L
F
P
G
K
---
Q
S
-
L
T
D
M
F
L
N
D
T
L
P
-----
S
--
I
------------
D
K
V
K
S
Y
F
Q
---
P
--
G
F
Y
S
D
F
P
-
S
N
P
A
N
---
P
F
---------------------------------------------------------------------------------------------
52
Fugue
49.22
16%
-131
- C4 -
3L2B
1
IPYR_CLOPE
A:
[4-236]
-------------------------------------------------------------------
M
V
K
L
K
V
E
D
L
E
-
M
D
------
K
I
A
P
L
A
P
E
V
S
L
----
K
M
A
W
N
I
-
M
R
D
K
N-------------------------
L
K
-
S
I
P
V
A
D
-
G
----
N
-
N
H
L
L
G
M
--
L
S
T
S
N
I
T
A
T
---
Y
M
DIWDSN
I
L
A
K
S
ATS
L
D
N
I
L
D
T
L
S
A
--
E
A
Q
N
I
N
E
E
R
---------
K
V
F
-----
P
G
K
V
V
V
A
----
A
M
Q
A
--
E
--
S
-
L
---
K
E
FISEG
D
I
A
I
-
A
G
D
R
A
E
I
Q
---
A
-
E
L
I
E
L
K
VS
L
L
I
-
V
T
G
G
--
H
T
P
S
K
-----
E
--
I
-
I
E
L
-----
A
K
-
K
N
N
I
T
V
I
T
T
--
P
HD
S
F
T
A
S
R
L
-
I
V
Q
S
L
---
P
V
D
Y
V
M
T
K
-------
D
N
L
V
A
V
S
TDDL
V
E
D
V
K
V
T
M
S
E
TRYS
N
Y
P
V
I
D
ENNKVV
G
S
I
A
RF-------------------------------------
46
Fugue
45.67
17%
-78
- C2 -
3G6I
3
?
A:
[2-201]
----------------------------------------------------AVDLNKENRD
P
K
Y
V
E
S
I
V
N
R
S
Q
K
I
V
-
D
K
L
GLTD
A
K
V
A
E
D
V
C
N
V
I
A
----
N
R
Y
F
E
L
-
N
D
----------------------------
I
Y
-
E
I
R
D
A
K
-
V
----
K
A
V
K
E
S
G
L
TG
D
A
K
N
E
A
L
K
A
---
A
---------------
E
N
E
K
D
A
A
L
Y
R
--
S
H
F
A
F
P
A
S
L
---------
S
L
F
-----
L
N
E
E
Q
I
E
----
A
V
K
D
--
G
M
-
T
-
Y
---
G
V
--------
V
-
K
V
T
Y
E
A
T
L
D
M
I
P
-
S
L
K
E
E
E
---
K
V
-
Q
I
Y
A
W
L
V
E
A
R
E
-----
F
--
A
M
D
A
E
-----
N
S
-
N
K
K
H
A
A
F
G
K
--
Y
--
K
G
R
I
N
N
Y
-
L
A
K
R
G
YN
L
T
K
E
R
E
E
W
A
-------
K
R
V
K
A
R
G
-------------------------------------------------------------------------
49
Fugue
45.54
33%
-200
- C- -
1G39
-
HNF1A_MOUSE
D:
[2-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---
S
K
--------
L
-
S
Q
L
Q
T
E
L
L
---
A
-
A
L
L
E
S
G
---
L
---
S
K
E
A
L
I
Q
A
L
G
--------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
45.03
11%
-141
- C6 -
1Z3E
3
SPX_BACSU
A:
[1-119]
------------------------------------------------------------------H
M
V
T
L
Y
T
S
P
S
----------------------------
C
T
S
-
C
R
----------------------------
K
A
-
R
A
W
L
E
E
-
H
----
E
I
P
F
V
E
R
N
--
I
F
S
E
P
L
S
I
D
---
E
---------------
I
K
Q
I
L
R
M
T
E
D
--
G
-----------------
T
D
E
-----
I
I
S
T
R
S
K
----
V
F
Q
K
--
L
--
N
-
V
---
N
V
--------
E
-
S
M
P
L
Q
D
L
Y
---
R
-
L
I
N
E
H
P
---
G
L
-
L
R
R
P
I
I
I
D
E
K
R
-----
L
--
Q
-
V
G
Y
-----
N
E
-
D
E
I
R
R
F
L
P
R
--
K
--
V
--------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
44.85
34%
-215
- C5 -
1KA2
-
CBP1_PYRFU
A:
[322-350]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
K
E
N
L
P
-----
F
--
M
-
S
N
Y
-----
T
P
-
E
D
V
Y
L
Y
F
N
I
V
R
P
--
D
F
I
------------------------------------------------------------------------------------------------------------
50
Fugue
44.06
33%
-165
- C- -
1G39
-
HNF1A_MOUSE
B:
[2-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---
S
K
--------
L
-
S
Q
L
Q
T
E
L
L
---
A
-
A
L
L
E
S
G
---
L
---
S
K
E
A
L
I
Q
A
L
G
--------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
44.00
34%
-224
- C5 -
1K9X
-
CBP1_PYRFU
A:
[322-350]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
K
E
N
L
P
-----
F
--
M
-
S
N
Y
-----
T
P
-
E
D
V
Y
L
Y
F
N
I
V
R
P
--
D
F
I
------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
43.21
34%
-213
- C5 -
1KA4
-
CBP1_PYRFU
A:
[322-350]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
K
E
N
L
P
-----
F
--
M
-
S
N
Y
-----
T
P
-
E
D
V
Y
L
Y
F
N
I
V
R
P
--
D
F
I
------------------------------------------------------------------------------------------------------------
24
HHSearch
39.96
15%
-32
- C5 -
4AW6
1
FACE1_HUMAN
A:
[412-472]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
F
E
F
Q
---
A
-
D
A
F
A
K
K
---
L
G
-
K
A
K
D
L
Y
-
S
A
L
I
-----
K
--
L
-
N
K
D
N
LGFP
V
S
-
D
W
L
F
S
M
W
H
Y
--
S
--
H
P
P
L
L
E
R
-
L
Q
A
L
K
---
T
M
---------------------------------------------------------------------------------------------
11
PsiBlast_PDB
38.88
50%
-121
- C3 -
3LE2
1
SPZX_ARATH
A:
[224-243]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
P
-----
Y
--
L
-
Q
G
Q
-----
D
K
-
R
Q
F
S
M
Y
F
Y
L
--
P
-----------------------------------------------------------------------------------------------------------------
48
Fugue
38.62
14%
-50
- C1 -
2MHK
-
LPOA_ECOLI
A:
[1-250]
MGSSHHHHHHSS
G
L
V
P
RGSHMGTHTP
D
Q
S
T
A
Y
M
Q
GT
A
Q
A
D
S
A
F
Y
L
Q
Q
M
Q
Q
SS
D
D
T
R
I
N
W
Q
L
L
A
I
R
A
L
V
K
E
G
K
T
G
Q
A
V
-
E
L
------
F
N
Q
L
P
Q
E
L
N
D
A
----
Q
R
R
E
K
T
-
L
L
----------------------------
A
V
-
E
I
K
L
A
Q
-
K
----
D
F
A
G
A
Q
N
L
--
L
A
K
I
T
P
A
D
-----------------------
L
E
Q
N
Q
Q
A
--
R
Y
W
Q
A
K
I
D
A
---------
S
Q
G
-----
R
P
S
I
D
L
L
----
R
A
L
I
--
A
--
Q
-
E
---
P
L
--------
L
G
A
K
E
K
Q
Q
N
I
---
D
-
A
T
W
Q
A
L
---
S
S
-
M
T
Q
E
Q
A
N
T
L
V
I
N
ADEN
I
--
L
-
Q
G
W
-----
L
D
-
L
Q
R
V
W
F
D
N
R
ND
P
--
D
M
M
K
A
G
I
-
A
D
W
Q
K
---
R
Y
P
N
N
P
G
A
KMLPTQL
V
N
V
K
A
F
K
PAST---------------------------------------------------------------------