@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04830: (2016-06-08 )
MKGEFLTARDIQKILGVKQAKSYDIIRTLNAQMKEEGYMVIQGKVSRAKFEECYCYKGPKSQTG
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------......-...10---......--------..20....------------....30......-----------.---.----40........50...--------.....60...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------MKGEF
L
-
T
A
R
D
I
---
Q
K
I
L
G
V
--------
K
QAKS
Y
D
I
------------
I
R
T
L
N
A
Q
M
KEE
G
-----------
Y
---
M
----
V
I
QGKVSRAKF
E
E
C
Y
--------
C
YKGPKSQTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
64.11
25%
-142
- C2 -
5DWZ
-
?
A:
[1-278]
-----------------------MLIQ
A
V
G
V
N
L
P
P
S
Y
V
C
L
E
G
PLG
G
E
R
P
R
A
Q
GDEM
L
M
Q
R
L
L
P
A
V
R
E
A
L
D
E
A
AVKPEEID
L
I
V
G
L
A
LSPDHLIENRDI
M
A
P
K
---
I
G
H
P
L
---
Q
K
V
L
G
A
--------
N
R
A
H
V
F
D
L
TDSS
L
A
R
A
----
L
Y
V
V
D
T
L
A
S
D
Q
G
-----------
Y
R
N
V
L
----
V
V
R
G
E
S
S
Q
G
L
E
V
D
----------------
S
E
S
G
F
A
L
A
D
G
A
L
A
L
L
C
R
P
TGK
A
A
F
R
R
G
A
L
GGDPA
Q
E
W
L
P
L
S
I
P
L
NTDIRQVGDVK
G
H
L
N
L
P
AQPG
L
P
E
A
V
R
A
G
F
T
R
L
A
G
D
F
PQ
L
N
W
V
R
E
E
WFGQGRPDGRCLGPF
E
L
A
S
Q
L
R
A
A
Q
R
D
RLD
E
L
L
L
I
S
F
D
PFGM
V
V
E
G
V
T
L
E
L
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
63.21
26%
-131
- C4 -
4N7R
-
GLUBP_ARATH
C:
[55-306]
----------------------------------------------------------------STHKPFPAEVSRSIMELSSVGTLSTLTHDGWPLG
V
G
V
R
F
A
-
V
D
K
D
G
---
T
P
V
L
C
L
--------
N
R
S
V
S
P
D
K
------------
R
S
A
L
H
V
Q
L
E
Q
C
G
LRTP-------
Q
---
C
----
T
I
Q
G
S
I
G
R
-------------------
P
G
D
D
T
V
LKRLSATWREKFGEEVKEDSLYVVAVDRVLQMEDFMEDGIWVASSDYKNASPDPLRDIAEDIVNQINANNMEDIFRFCNVYVDLDFVVSETKMIWMDRLGFDLRVWSPRGVYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKSYCPADFNKVKLLKQVV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
60.79
24%
-159
- C2 -
3I4P
2
?
A:
[16-48]
-----------------------------------------------------------------------------------------------------
S
T
L
-
A
V
A
D
L
---
A
K
K
V
G
L
--------
S
T
T
P
C
W
R
R
------------
I
Q
K
----
M
E
E
D
G
-----------
V
---
I
----
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
58.22
22%
-81
- C2 -
1MOL
-
MONB_DIOCU
A:
[1-94]
--------------------------------------------------------------------------------------------------
G
E
W
E
I
I
-
D
I
G
P
F
---
T
Q
N
L
G
K
--------
F
A
V
D
E
E
N
K
I
GQY
G
R
L
T
F
N
KV
I
R
P
C
M
K
K
T
I
Y
E
N
EREIK
G
Y
E
Y
Q
L
Y
---
V
----
Y
A
S
D
K
L
F
R
A
D
I
S
E
D
Y
KTR
G
R
K
L
L
R
F
N
G
P
V
P
P
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
53.15
40%
-112
* C3 *
2YWJ
-
PDXT_METJA
A:
[143-175]
-------------------------------------------------------------------------------------------------------
V
-
I
A
R
D
G
---
D
K
I
V
G
V
--------
K
Q
G
K
Y
M
A
L
--------------
S
F
H
P
E
L
S
E
D
G
-----------
Y
---
K
----
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
52.31
16%
-70
- C2 -
2DI3
1
?
A:
[2-232]
-----------------------------------------------------------------------------S
V
K
A
H
E
S
V
M
D
W
V
T
E
E
L
R
S
GRL
K
I
G
D
H
L
P
S
E
R
A
L
---
S
E
T
L
G
V
------------
S
R
S
S
------------
L
R
E
A
L
R
V
L
E
A
L
G
-----------
T
---
I
----
S
T
A
T
G
S
G
P
R
S
G
T
I
I
T
--------
A
A
P
G
Q
A
L
S
L
S
V
T
L
Q
L
V
T
NQVG
H
H
D
I
Y
E
T
R
Q
L
L
E
G
W
A
A
L
H
SSAERGD
W
D
V
A
E
A
L
L
E
K
M
D
DPSLP
L
E
D
F
L
R
F
D
A
E
F
H
V
V
I
S
K
G
AEN
P
L
I
S
T
L
M
E
A
L
R
L
S
V
A
D
H
T
V
A
R
A
R
ALPD
W
R
A
T
S
A
R
L
Q
K
E
H
R
A
I
L
A
A
L
R
A
GE
S
T
V
A
A
T
L
I
K
E
H
I
E
G
Y
Y
E
E
T
A
A
A
EAL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
51.96
8%
-260
- C2 -
5A2Q
-
RS25_HUMAN
Z:
[65-101]
----------------------------------------------------------------------------------------------------
Y
K
L
I
-
T
P
A
V
V
---
S
E
R
L
K
I
--------
R
G
S
L
A
R
A
A
------------
L
Q
E
----
L
L
S
K
G
-----------
L
---
I
----
K
L
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
51.24
23%
-112
- C3 -
4DVZ
-
CAGA_HELPY
A:
[308-829]
-----------------------------------------------------------------------------------------L
M
G
S
H
N
GK
V
S
L
L
Y
A
G
-
D
K
H
D
W
---
N
A
T
V
G
Y
--------
K
D
----
N
V
------------
A
T
L
I
N
V
H
M
K
N
G
S
-----------
G
---
L
----
V
I
A
G
G
E
K
G
I
N
N
P
S
F
Y
--------
L
Y
K
E
D
Q
-
L
T
G
S
Q
R
A
L
S
Q
E
E
I
R
N
K
V
D
F
M
E
F
L
A
Q
N
NTKLDNLS
E
K
E
K
E
K
F
Q
N
E
I
E
D
F
Q
K
DS
K
A
Y
L
D
A
L
G
N
D
R
I
A
F
V
S
KKDTKH
S
A
L
I
T
E
F
N
NG
D
L
S
Y
T
L
K
D
YE
K
N
V
T
L
Q
G
S
LKHDG
V
M
F
V
D
Y
SF
N
K
V
A
V
F
NLPDLNNLAITS
F
V
R
R
N
L
E
N
K
L
T
A
K
GLS
L
Q
E
A
N
K
L
I
K
D
F
L
S
S
N
K
E
L
A
G
K
A
L
N
F
N
K
A
V
A
E
A
K
S
T
GNY
D
E
V
K
K
A
Q
K
D
L
E
K
S
L
R
K
R
E
H
L
E
K
E
V
E
K
K
L
E
S
K
SGNKK
A
Q
A
N
S
Q
K
D
E
I
F
A
L
I
N
K
E
A
N
R
D
A
R
A
I
A
Y
T
Q
N
L
K
G
I
K
R
E
L
S
D
K
L
E
K
I
S
K
D
L
K
D
F
S
K
S
F
D
E
F
K
NFSKA
E
E
T
L
K
A
L
K
G
S
V
K
D
L
GIN
P
E
W
I
S
K
V
E
N
L
N
A
A
L
N
E
F
K
N
GDF
S
K
V
T
Q
A
K
S
D
L
E
N
S
V
K
D
V
I
I
N
Q
K
V
T
D
K
V
D
N
L
N
Q
A
V
S
V
A
K
A
M
GDF
S
R
V
E
Q
V
L
A
D
L
K
N
F
S
K
E
Q
L
A
Q
Q
A
Q
K
14
HHSearch
49.39
16%
-166
- C2 -
3I71
2
EUTK_ECOLI
A:
[19-50]
-------------------------------------------------------------------------------------------------------
M
-
T
A
G
E
V
---
A
A
H
F
G
W
--------
P
L
E
K
A
R
N
A
------------
L
E
Q
----
L
F
S
A
G
-----------
T
---
L
----
R
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
48.52
17%
-83
- C2 -
1QBJ
1
DSRAD_HUMAN
A:
[26-61]
-----------------------------------------------------------------------------------------------------
K
A
T
-
T
A
H
D
L
---
S
G
K
L
G
T
--------
P
K
K
E
I
N
R
V
------------
L
Y
S
----
L
A
K
K
G
-----------
K
---
L
----
Q
K
E
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
48.33
12%
-194
- C2 -
2LNB
-
ZBP1_HUMAN
A:
[33-66]
-----------------------------------------------------------------------------------------------------
S
P
V
-
K
L
A
Q
L
---
V
K
E
C
Q
A
--------
P
K
R
E
L
N
Q
V
------------
L
Y
R
----
M
K
K
E
L
-----------
K
---
V
----
S
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
47.41
14%
0
- C- -
1JJ2
-
RL2_HALMA
A:
[94-161]
-------------------------------------------------------------------------------------------------------
L
-
P
L
A
E
I
PEG
V
P
V
C
N
V
ESSPGDGG
K
F
A
R
A
S
G
V
------------
N
A
Q
L
L
T
H
D
R
N
V
A
-----------
V
---
V
----
K
L
P
S
G
E
M
K
R
L
D
P
Q
C
R
--------
A
T
I
G
V
V
G
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
47.31
19%
-189
- C2 -
1Z4H
-
TORI_ECOLI
A:
[7-33]
---------------------------------------------------------------------------------------------------
P
D
S
L
V
-
D
L
K
F
I
---
M
A
D
T
G
F
--------
G
K
T
F
I
Y
D
R
------------
I
K
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
45.60
18%
-128
- C2 -
3KE2
1
?
A:
[32-65]
-----------------------------------------------------------------------------------------------------
A
R
H
-
N
L
L
S
L
---
G
K
L
T
G
M
--------
P
R
R
T
L
Q
D
A
------------
I
A
S
F
----
A
D
I
G
-----------
I
---
E
----
V
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
39.43
8%
-208
- C2 -
3JAM
-
?
Z:
[57-93]
----------------------------------------------------------------------------------------------------
Y
R
Y
V
-
S
V
S
V
L
---
V
D
R
F
K
L
--------
G
G
S
L
A
R
V
A
------------
L
R
H
----
L
E
N
E
G
-----------
I
---
I
----
K
P
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
38.34
17%
-66
- C2 -
4J2N
1
?
A:
[3-30]
---------------------------------------------------------------------------------------------------
M
P
P
R
A
-
S
I
Q
Q
T
---
A
D
Y
L
G
V
--------
S
T
K
T
V
R
N
Y
------------
I
A
A
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
37.45
23%
17
- C2 -
1FE6
-
?
A:
[1-52]
--------------------------------------------------------------------------------------------------
G
S
I
I
N
E
-
T
A
D
D
I
---
V
Y
R
L
T
V
--------
I
I
D
D
R
Y
E
S
------------
L
K
N
L
I
T
L
R
A
D
R
L
-----------
E
---
M
----
I
I
N
D
N
V
S
T
I
L
A
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
36.58
9%
-79
* C4 *
4K1R
12
SST2_SCHPO
A:
[9-197]
TFKIHAYTEGG
K
P
L
R
T
IYLPKL
L
K
K
V
F
L
D
V
V
K
P
N
T
K
K
N
L
E
T
C
G
I
L
C
G
K
L
R
QNAFFIT
H
L
V
I
P
L
Q
E
A
T
SD
T
C
G
T
TD
E
A
S
L
F
E
F
Q
D
K
H
NLLTL
G
W
I
H
T
HP
T
Q
T
C
F
M
-
S
S
V
D
L
---
H
T
H
C
S
Y
--------
Q
L
M
L
P
E
A
I
------------
A
I
V
M
A
P
S
K
N
T
S
G
-----------
I
---
F
----
R
L
L
D
P
E
G
L
Q
T
I
V
K
C
R
--------
K
P
G
L
F
H
P
H
E
G
KVYTMVAQPGH
V
R
E
I
N
S
K
L
Q
V
V
D
LRVK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
36.33
4%
-113
- C2 -
4R24
1
?
B:
[5-31]
---------------------------------------------------------------------------------------------------
D
K
K
V
M
-
S
I
G
I
V
---
K
E
L
T
G
L
--------
S
E
R
Q
I
R
Y
Y
------------
E
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
35.98
7%
-115
- C2 -
4LHF
-
VCOX_BPP2
A:
[8-67]
---------------------------------------------------------------------------------------------------
M
T
D
A
I
-
P
Y
Q
E
F
---
A
K
L
I
G
K
--------
S
T
G
A
V
R
R
M
------------
I
D
K
G
K
L
P
V
I
D
M
T
-----------
D
---
P
QSAS
A
G
E
Y
W
V
Y
L
P
A
W
N
N
G
L
--------
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------