@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04950: (2016-06-08 )
MEIAFLNSLVVTSPGFYKAEKITLDEVKQWLKHYDGRYKSFIGHKSTAQFLQKLLGIRIEQNRKTFRHMKYQKAICFSLYERYPENVLLTQRDLEKARYQFYLLTRLD
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......----..---10----.-...----.-...20......--..30------..--......40........50........60-------.........70........80----...-----------...-...-90...----.----..----..100......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
I
A
F
L
N
----
S
L
---
V
V----T-SPG----F-YKAEKI
T
L
D
E
V
--
K
Q
W
L
------
K
H--YD
G
R
Y
K
S
F
IGH
K
S
T
A
Q
F
L
Q
K
L
LG
I
R
IE--------QN
R
K
T
F
R
H
M
K
Y
Q
K
A
I
C
F
S
L
Y
-----
E
RY-----------PEN-
V
L
L
-
T
Q
R
D
L
----
E
----
K
A
----
R
Y
Q
F
Y
L
L
T
RLD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
83.91
32%
-183
- C2 -
2J6B
-
?
A:
[4-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
N
----
S
A
---
I
L
----
P
L
K
P
G
E
E
Y
-
T
-
V
K
A
K
E
I
T
I
Q
E
A
--
K
E
L
V
------
T
K
--
E
--
Q
F
T
S
A
I
G
H
Q
A
T
A
E
L
L
S
S
I
L
G
V
N
V
P
--------
M
N
R
V
Q
I
K
V
T
H
G
D
R
I
L
A
F
M
L
K
-----
Q
R
L
-----------
P
E
G
-
V
V
V
K
T
T
E
E
L
----
E
----
K
I
----
G
Y
E
L
W
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
82.88
31%
-177
- C2 -
2J6B
-
?
A:
[1-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
Y
I
L
N
----
S
A
---
I
L
----
P
-
L
K
P
G
E
E
Y
T
-
V
K
A
K
E
I
T
I
Q
E
A
--
K
E
L
V
------
T
K
----
E
Q
F
T
S
A
I
G
H
Q
A
T
A
E
L
L
S
S
I
L
G
V
N
V
P
--------
M
N
R
V
Q
I
K
V
T
H
G
D
R
I
L
A
F
M
L
K
-----
Q
R
L
-----------
P
E
G
-
V
V
V
K
T
T
E
E
L
----
E
----
K
I
----
G
Y
E
L
W
L
F
E
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
82.61
32%
-184
- C2 -
2J6C
1
?
A:
[4-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
N
----
S
A
---
I
L
----
P
L
K
P
G
E
E
Y
-
T
-
V
K
A
K
E
I
T
I
Q
E
A
--
K
E
L
V
------
T
K
--
E
--
Q
F
T
S
A
I
G
H
Q
A
T
A
E
L
L
S
S
I
L
G
V
N
V
P
--------
M
N
R
V
Q
I
K
V
T
H
G
D
R
I
L
A
F
M
L
K
-----
Q
R
L
-----------
P
E
G
-
V
V
V
K
T
T
E
E
L
----
E
----
K
I
----
G
Y
E
L
W
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
71.17
23%
-193
- C2 -
2X4I
-
Y114_SIRV1
A:
[2-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
V
Y
L
A
N
----
A
F
SIN
M
L
----
T
-
K
F
P
----
T
K
V
V
I
D
K
I
D
R
L
E
F
--
C
E
N
I
------
D
N
----
E
D
I
I
N
S
I
G
H
D
S
T
I
Q
L
I
N
S
L
C
G
T
T
F
Q
--------
K
N
R
V
E
I
K
L
E
K
E
D
K
L
Y
V
V
Q
I
S
------------------------
I
L
-
T
L
E
E
I
----
L
----
K
L
Y
E
S
G
K
V
Q
F
F
E
I
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
67.00
20%
-151
- C2 -
2J85
-
?
A:
[2-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
V
F
L
T
N
----
A
F
---
S
I
NMLK
E
-
F
P
T
----
T
-
I
T
I
D
K
L
D
E
E
D
F
--
C
L
K
L
------
E
L
R
L
E
D
G
T
L
I
N
A
I
G
H
D
S
T
I
N
L
V
N
T
L
C
G
T
Q
L
Q
--------
K
N
R
V
E
V
K
M
N
E
G
D
E
A
L
I
I
M
I
S
-----
Q
R
L
-----------
E
E
G
-
K
V
L
-
S
D
K
E
I
----
K
----
D
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
63.98
24%
-108
- C2 -
4FS7
2
?
A:
[2-394]
YDFVIDE
I
T
Y
N
F
T
KEHGTVEVSGLREFLNP
L
V
V
N
I
P
P
V
V
T
Y
KD
N
K
Y
D
VV
S
I
G
YAAFQGCRKVT
E
I
K
I
P
STVREIGEFAFENCSKLE
I
I
N
I
P
DSVKMIGRCTFSGCYALK
S
I
L
L
PLMLKSIGVEAFKGCDFK
E
I
T
I
P
EGVTVIGDEAFATCESLE
Y
V
S
L
PDSMETLHNGLFSGCGKLK
S
I
K
L
PRNLKIIRDYCFAECILLE
N
M
E
F
P
NSLY
Y
L
G
DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK
L
R
I
G
G
SLFYNCSG
L
K
K
V
I
Y
G
----
S
V
---
I
V
----
P
-
E
K
T
----
F
-
Y
G
C
S
S
L
T
E
V
K
L
--
L
D
S
V
------
K
F
--
I
G
E
--
E
A
F
E
S
C
T
S
L
V
S
I
D
L
P
Y
L
V
E
E
I
----------
G
K
R
S
F
R
G
C
T
S
L
S
N
I
N
F
P
L
S
-----
L
R
K
IGANAFQGCIN
L
K
K
-
V
E
L
-
P
K
R
-
L
----
E
----
Q
Y
----
R
Y
D
F
E
D
T
T
K
F
K
W
I
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
61.25
18%
-151
- C2 -
2X4I
-
Y114_SIRV1
A:
[2-113]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
V
Y
L
A
N
AFSI
N
M
---
L
T
----
K
-
F
P
T
----
K
-
V
V
I
D
K
I
D
R
L
E
F
--
C
E
N
I
------
D
----
N
E
D
I
I
N
S
I
G
H
D
S
T
I
Q
L
I
N
S
L
C
G
T
T
F
Q
--------
K
N
R
V
E
I
K
L
E
K
E
D
K
L
Y
V
V
Q
I
S
-----
I
L
T
-----------
L
E
E
-
I
L
K
-
L
Y
E
S
G
----
K
----
V
Q
----
F
F
E
I
I
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.18
23%
-137
- C2 -
2J85
-
?
A:
[38-113]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------
R
L
--
E
D
G
T
L
I
N
A
I
G
H
D
S
T
I
N
L
V
N
T
L
C
G
T
Q
L
Q
--------
K
N
R
V
E
V
K
M
N
E
G
D
E
A
L
I
I
M
I
S
-----
Q
R
L
-----------
E
E
G
-
K
V
L
-
S
D
K
E
I
----
K
D
M
Y
R
Q
G
----
K
I
S
F
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
52.02
29%
-222
- C2 -
2X4I
-
Y114_SIRV1
A:
[45-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
H
D
S
T
I
Q
L
I
N
S
L
C
G
T
T
F
Q
--------
K
N
R
V
E
I
K
L
E
K
E
D
K
L
Y
V
V
Q
I
S
------------------------
I
L
-
T
L
E
E
I
L
K
L
Y
E
----
S
G
----
K
V
Q
F
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
49.68
25%
-71
- C1 -
1SSF
-
A:
[7-129]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
F
V
G
----
L
R
---
V
V
A
K
W-
S
-
S
N
G
----
Y
-
F
Y
S
G
K
I
T
R
D
V
G
AG
K
Y
K
L
------
L
F
--
D
D
G
Y
E
C
D
V
L
G
-
K
D
I
L
L
C
D
P
I
P
L
D
T
E
V
T
ALSEDE
Y
F
S
A
G
V
V
K
G
H
R
K
E
S
G
E
L
Y
Y
S
I
E
KEG
Q
R
K
W
Y
-----------
K
R
M
A
V
I
L
-
S
L
E
Q
G
----
N
----
R
L
----
R
E
Q
-
Y
G
L
G
P
Y
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
49.67
26%
-97
- C3 -
3VGO
-
CBLB_HUMAN
A:
[251-330]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
F
L
---
A
V
----
T
-
H
P
G
----
Y
-
M
A
F
--
L
T
Y
D
E
V
--
K
A
R
L
------
Q
K
--
Y
S
T
K
P
G
S
Y
I
F
R
L
S
C
T
R
L
G
Q
W
A
I
G
Y
V
T
G
--------
D
G
---------------
N
I
L
-----
Q
T
I
-----------
P
H
N
-
K
P
L
-
F
Q
A
L
I
----
D
----
G
S
----
R
E
G
F
Y
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
48.86
26%
-121
- C3 -
5DBJ
2
?
D:
[5-441]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDHDYDVVIIGGGPAGSTMASYLAKAGVKCAVFEKELFEREHVGESLVPATTPVLLEIGVMEKIEKANFPKKFGAAWTSADSGPEDK
M
G
F
Q
G
L
D
----
H
--------------
D
----
F
-
R
S
A
E
-
I
L
F
N
E
R
--
K
Q
-------------
E
G
V
D
R
D
F
T
F
H
V
D
R
G
K
F
D
R
I
L
L
E
H
A
G
S
--------
L
G
A
K
V
F
Q
G
V
E
I
A
D
V
E
F
L
S
---------------------
P
G
N
-
V
I
V
-
N
A
K
-
L
----
G
----
K
R
----
S
V
E
I
K
A
K
M
V
V
D
ASGRNVLLGRRLGLREKDPVFNQFAIHSWFDNFDRKSATQSPDKVDYIFIHFLPMTNTWVWQIPITETITSVGVVTQKQNYTNSDLTYEEFFWEAVKTRENLHDALKASEQVRPFKKEADYSYGMKEVCGDSFVLIGDAARFVDPIFSSGVSVALNSARIASGDIIEAVKNNDFSKSSFTHYEGMIRNGIKNWYEFITLYYRLNILFTAFVQDPRYRLDILQLLQGDVYLEVLDKMREIIAAVESDPEHLWHKYLG
9
PsiBlast_PDB
48.64
26%
-102
- C3 -
3ZNI
2
CBLB_HUMAN
A:
[218-297]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
F
L
---
A
V
----
T
-
H
P
G
----
Y
-
M
A
F
--
L
T
Y
D
E
V
--
K
A
R
L
------
Q
K
--
Y
S
T
K
P
G
S
Y
I
F
R
L
S
C
T
R
L
G
Q
W
A
I
G
Y
V
T
G
--------
D
G
---------------
N
I
L
-----
Q
T
I
-----------
P
H
N
-
K
P
L
-
F
Q
A
L
I
----
D
----
G
S
----
R
E
G
F
Y
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
48.14
34%
-181
- C3 -
3J16
-
DOM34_YEAST
A:
[208-254]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
----
T
I
---
I
L
----
C
-
S
P
G
----
F
-
Y
A
--
K
I
L
M
D
K
I
--
F
Q
Y
A
E
E
E
HNK
K
I
--
L
D
N
K
G
M
F
F
I
A
H
C
S
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
46.58
34%
-168
- C3 -
2VGM
-
DOM34_YEAST
A:
[208-254]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
----
T
I
---
I
L
----
C
-
S
P
G
----
F
-
Y
A
--
K
I
L
M
D
K
I
--
F
Q
Y
A
E
E
E
HNK
K
I
--
L
D
N
K
G
M
F
F
I
A
H
C
S
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
45.30
25%
-105
- C3 -
2CBL
1
CBL_HUMAN
A:
[218-305]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
H
P
G
----
Y
---
M
A
F
L
T
Y
D
E
V
--
K
A
R
L
------
Q
K
--
F
I
H
K
P
G
S
Y
I
F
R
L
S
C
T
R
L
G
Q
W
A
I
G
Y
-
V
T
--------
A
D
G
N
I
L
Q
T
I
P
H
N
K
P
L
F
Q
A
L
I
-----
D
G
F
-----------
R
E
G
-
F
Y
L
-----
F
----
P
----
D
G
----
R
N
Q
N
P
D
L
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
43.44
36%
-146
- C3 -
3PFV
2
CBLB_HUMAN
A:
[215-262]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
F
L
---
A
V
----
T
-
H
P
G
----
Y
-
M
A
F
--
L
T
Y
D
E
V
--
K
A
R
L
------
Q
K
--
Y
S
T
K
P
G
S
Y
I
F
R
L
S
C
T
R
L
G
Q
W
A
I
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
42.90
36%
-135
- C3 -
5AXI
-
?
A:
[215-262]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
----
F
L
---
A
V
----
T
-
H
P
G
----
Y
-
M
A
F
--
L
T
Y
D
E
V
--
K
A
R
L
------
Q
K
--
Y
S
T
K
P
G
S
Y
I
F
R
L
S
C
T
R
L
G
Q
W
A
I
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
42.49
34%
-137
- C3 -
2VGN
-
DOM34_YEAST
A:
[208-259]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
----
T
I
---
I
L
----
C
-
S
P
G
----
F
-
Y
A
--
K
I
L
M
D
K
I
--
F
Q
Y
A
E
E
E
HNK
K
I
--
L
D
N
K
G
M
F
F
I
A
H
C
S
T
G
-
Y
L
Q
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
42.38
23%
-156
- C3 -
1OF9
-
PFPA_ENTHI
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEIL
C
N
L
C
T
G
L
I
N
T
L
E
----
N
L
---
L
T
----
T
-
K
G
A
--------------
D
K
V
--
K
D
Y
I
------
S
S
--
L
C
N
K
A
S
G
F
I
-----
A
T
L
C
T
K
V
L
D
F
G
I
D
--------
K
L
I
Q
L
I
E
D
K
V
D
A
N
A
I
C
A
K
I
H
-----
A
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------