@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04970: (2016-06-08 )
MISKKVVLPLVFSAPFIFFFVLCIVVVMTISRENQVGDDFIGGGDGEYETVGIAPEVERFRAVFEKYARQEGVFDQVNIIMALTMQESGGRSLDIMQSSESIGLPPNSITDPERSIEVGIKHFKKVFKQAGGDVRLTLQAYNFGSGFIDYVKKNGGKYTKKLALDFSRLQAFKMGWKSYGDPSYVDHVMRYVKGSDKNVKPVKGSMDFYETVMKEALKYEGQPYAWGGSNPETGFDCSGLVQWSFAKAGITLPRTAQEQHGATKKISEKEATAGDLVFFGGTYEGKAITHVGIYVGNGRMFNSNDSGIQYSDLKSGYWRDHLVSFGRIK
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70..--......80...-.....90.....-...100.......110.......120.....---..130--.---.......140.......150.......160.......170----------.--------------...--------------..-.-..180.......190.......200.......210-...-......220....--..---.-230-----------.------------.----------......240.......250.......260.....-..270.......280..-.....290.......300.....----.-.310....-------.....320.......--
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MISK
K
V
V
L
P
LVFS
A
P
F
I
F
F
F
V
L
C
I
V
V
V
M
TISRENQVGDDFIGGGDGE
Y
E
TVGIA
P
E
V
E
R
F
R
A
V
F
E
K
Y
A
R
QEGV--
F
D
Q
V
N
I
I
M
A
L
T
-
M
QESGG
R
S
L
D
I
M
-QSSESIGLPPNSITD
P
E
R
S
I
E
V
G
I
K
H
F
K
K
V
F
---
K
QAG---G---
D
V
R
L
T
L
Q
AYNFG
S
G
F
I
D
Y
V
K
KNGGK
Y
T
K
K
L
A
L
D
F
S
R
L
Q
------------
A
--------------
F
K
M
--------------
G
W
-
K
-SYG
D
P
S
Y
V
D
H
V
M
R
Y
VKGSDKNVKPVKG
S
M
D
F
Y
E
---
T
V
M
-
K
E
A
L
KYEGQPYAW--GG---S-NP------------E------------T----------GFDC
S
G
L
V
Q
W
SFAKAGITLPR
T
A
Q
E
QHGATKKIS-EKEATAG
D
L
V
F
FGGTYE-G
K
A
I
T
H
V
G
I
Y
VGN
G
R
M
FNSNDSG----
I
-
Q
Y
--
S
DLK-------S
G
Y
W
R
D
H
L
V
SFGRIK--
1
PsiBlast_PDB
81.45
42%
-103
- C- -
4FDY
-
?
A:
[47-337]
--------------------------------------------------
V
T
V
S
P
E
V
L
A
H
R
P
L
I
E
K
Y
G
K
E
Y
G
I
--
E
D
Y
V
S
Y
I
L
A
I
M
-
Q
V
E
S
G
G
T
A
E
D
V
M
-
Q
S
S
E
S
L
G
L
P
P
N
S
L
S
-
T
E
E
S
I
K
Q
G
V
K
Y
F
S
E
L
L
T
S
A
E
Q
Q
G
---
V
---
D
I
D
S
V
I
Q
S
Y
N
Y
G
G
G
F
L
N
Y
V
R
S
H
G
K
K
Y
T
Y
E
L
A
E
Q
F
S
K
E
K
------------
S
GG
Q
K
A
D
Y
PNPIAIP
V
N
G
--------------
G
W
-
R
Y
N
Y
G
N
Q
F
Y
V
Q
L
V
S
Q
Y
L
T
----
D
T
S
P
T
E
F
D
D
E
T
V
Q
---
V
I
M
-
D
E
A
L
K
Y
E
G
F
P
Y
V
F
--
G
G
---
A
-
S
P
------------
T
------------
T
----------
S
F
D
-
S
G
L
I
Q
W
V
Y
D
K
A
G
I
S
L
P
R
V
A
Q
D
Q
Y
D
A
T
Q
E
I
S
-
M
E
E
A
Q
A
G
D
L
I
F
F
H
S
T
Y
N
A
G
T
Y
V
T
H
V
A
I
Y
L
E
G
N
R
F
Y
H
A
G
D
P
-----
I
-
G
Y
--
G
D
L
S
-------
S
R
Y
W
Q
D
H
L
I
G
A
R
R
V
---
23
HHSearch
80.18
44%
-101
- C- -
4FDY
-
?
A:
[46-338]
-------------------------------------------------
G
V
T
V
S
P
E
V
L
A
H
R
P
L
I
E
K
Y
G
K
E
Y
G
I
ED
Y
V
--
S
Y
I
L
A
I
M
-
Q
V
E
S
G
G
T
A
E
D
V
M
-
Q
S
S
E
S
L
G
-
L
P
P
N
S
L
S
T
E
E
S
I
K
Q
G
V
K
Y
F
S
E
L
L
---
T
S
A
E
Q
Q
G
V
---
D
I
D
S
V
I
Q
S
Y
N
Y
G
G
G
F
L
N
Y
V
R
S
H
G
K
K
Y
T
Y
E
L
A
E
Q
F
S
K
E
K
------------
S
--------------
G
G
Q
K
A
D
Y
PNPIAIPVNG
G
W
R
Y
-
N
Y
G
N
Q
F
Y
V
Q
L
V
S
Q
Y
L
T
D
T
S
P
----
T
E
F
D
D
E
T
V
Q
---
V
I
M
-
D
E
A
L
K
Y
E
G
F
P
Y
V
F
--
G
G
---
A
-
S
P
------------
T
------------
T
----------
S
F
D
-
S
G
L
I
Q
W
V
Y
D
K
A
G
I
S
L
P
R
V
A
Q
D
Q
Y
D
A
T
Q
E
I
S
-
M
E
E
A
Q
A
G
D
L
I
F
F
H
S
T
Y
N
A
G
T
Y
V
T
H
V
A
I
Y
L
E
G
N
R
F
Y
H
A
G
D
-
P
----
I
-
G
Y
--
G
D
L
S
-------
S
R
Y
W
Q
D
H
L
I
G
A
R
R
V
I
--
47
Fugue
77.90
46%
-97
- C- -
4FDY
-
?
A:
[46-340]
-------------------------------------------------
G
V
T
V
S
P
E
V
L
A
H
R
P
L
I
E
K
Y
G
K
E
Y
G
I
--
E
D
Y
V
S
Y
I
L
A
I
-
M
Q
V
E
S
G
G
T
A
E
D
-
V
M
Q
S
S
E
S
L
G
L
P
P
N
S
L
S
T
E
E
-
S
I
K
Q
G
V
K
Y
F
S
E
L
L
---
T
S
A
E
---
Q
Q
GV
D
I
D
S
V
I
Q
S
Y
N
Y
G
G
G
F
L
N
Y
V
R
S
H
G
K
K
Y
T
Y
E
L
A
E
Q
F
S
K
E
K
S
GG
Q
K
A
D
Y
PNPI
A
--------------
I
P
V
NG
G
-----------
W
R
-
Y
-
N
Y
G
N
Q
F
Y
V
Q
L
V
S
Q
Y
L
-----
T
D
T
S
P
T
E
F
D
D
E
T
V
---
Q
V
I
M
D
E
A
L
K
Y
E
G
F
P
Y
V
F
--
G
G
---
A
-
S
P
------------
T
------------
T
-----------
S
F
D
S
G
L
I
Q
W
V
Y
D
K
A
G
I
S
L
P
R
V
A
Q
D
Q
Y
D
A
T
Q
E
I
S
M
E
-
E
A
Q
A
G
D
L
I
F
F
H
S
T
Y
N
A
G
T
Y
V
T
H
V
A
I
Y
L
E
G
N
R
F
Y
H
A
G
D
P
-----
I
-
G
Y
--
G
D
L
S
-------
S
R
Y
W
Q
D
H
L
I
G
A
R
R
V
I
H
N
7
PsiBlast_PDB
59.14
34%
-141
- C1 -
4XCM
-
?
A:
[131-235]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
-
R
A
V
L
R
Y
L
G
V
P
Y
K
Y
--
G
A
---
N
-
S
P
-------------------------
L
----------
A
L
D
C
S
A
F
V
A
Q
V
Y
A
E
L
G
V
A
L
P
R
T
T
K
E
Q
Y
Q
A
F
P
P
V
E
-
A
P
R
--
P
G
D
L
V
F
F
--
S
F
G
-
G
K
E
V
D
H
V
G
I
Y
L
G
R
G
V
F
A
H
A
S
S
Y
G
SR--
V
-
V
I
--
E
S
L
E
-------
A
P
F
Y
R
------------
6
PsiBlast_PDB
56.78
35%
-116
- C1 -
3I86
-
?
A:
[13-117]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
Y
V
I
-
K
R
M
G
S
Q
M
G
V
P
Y
S
W
--
G
G
---
G
-
S
L
------------
D
GPSKGVGDGANI
T
----------
G
F
D
C
S
G
L
M
R
Y
G
F
A
G
V
G
V
L
I
P
R
F
S
G
D
Q
Y
N
A
G
R
H
I
P
-
Q
D
Q
A
R
R
G
D
L
I
F
Y
G
-----
P
G
G
S
Q
H
V
T
M
Y
L
G
N
G
Q
M
L
E
A
S
G
S
---------------------------------------
17
PsiBlast_PDB
56.40
30%
-110
- C1 -
4JXB
5
?
A:
[3-129]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
Q
Q
I
T
D
V
V
I
-
A
R
G
L
S
Q
R
G
V
P
F
S
W
--
A
G
GGI
S
-
G
P
------------
T
RGTGTGINT---
V
----------
G
F
D
A
S
G
L
I
Q
Y
A
Y
A
G
A
G
L
K
L
P
R
S
S
G
Q
M
Y
K
V
G
Q
K
V
L
-
P
Q
Q
A
R
K
G
D
L
I
F
Y
G
-----
P
E
G
T
Q
S
V
A
L
Y
L
G
K
G
Q
M
L
E
V
G
D
V
-----
V
-
Q
V
--
S
P
V
R
-------
T
N
G
M
T
P
Y
L
V
--------
4
PsiBlast_PDB
55.81
36%
-104
- C1 -
4Q4T
3
RIPA_MYCTU
A:
[344-451]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
Y
V
I
-
R
R
G
M
S
Q
I
G
V
P
Y
S
W
--
G
G
---
G
-
N
A
------------
A
GPSKGIDSGAG
T
V
----------
G
F
D
C
S
G
L
V
L
Y
S
F
A
G
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
-
S
S
Q
M
R
R
G
D
V
I
F
Y
G
-----
P
N
G
S
Q
H
V
T
I
Y
L
G
N
G
Q
M
L
A
A
P
D
V
G
----
L
-
K
-------------------------------
32
HHSearch
55.78
37%
-113
- C1 -
2HBW
3
?
A:
[103-227]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
-
Q
K
A
M
Q
Q
-
S
N
Y
Y
L
W
--
G
G
---
T
-
V
G
-------------------------
P
----------
N
Y
D
C
S
G
L
M
Q
A
A
F
V
S
V
G
I
W
L
P
R
D
A
Y
Q
Q
E
A
F
T
Q
A
I
T
-
I
D
E
L
A
P
G
D
L
V
F
F
G
T
P
----
V
K
A
T
H
V
G
L
Y
L
G
D
G
C
Y
I
H
S
S
G
K
A
QGRD
G
I
G
I
--
D
I
L
S
EQGD
V
V
S
R
S
Y
Y
-
Q
Q
L
R
G
A
G
R
V
V
--
18
PsiBlast_PDB
54.46
32%
-105
- C1 -
3GT2
3
?
A:
[17-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---
V
V
I
-
A
R
G
L
S
Q
R
G
V
P
F
S
W
AG
G
G
---
I
-
N
G
------------
P
------------
T
RGTGTGAN
T
V
G
F
D
A
S
G
L
M
Q
Y
A
Y
A
G
A
G
I
K
L
P
R
S
S
G
A
M
Y
R
V
G
Q
K
I
L
-
P
Q
Q
A
R
K
G
D
L
I
F
Y
G
-----
P
E
G
T
Q
S
V
A
M
Y
L
G
N
N
Q
M
L
E
V
G
D
V
-----
V
-
Q
V
--
S
P
V
R
-------
T
----------------
8
PsiBlast_PDB
53.37
35%
-96
- C1 -
2XIV
-
A:
[81-188]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
Y
V
I
-
R
R
G
M
S
Q
I
G
V
P
Y
S
W
--
G
G
---
G
-
N
A
------------
A
GPSKGIDSGAG
T
V
----------
G
F
D
C
S
G
L
V
L
Y
S
F
A
G
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
-
S
S
Q
M
R
R
G
D
V
I
F
Y
G
-----
P
N
G
S
Q
H
V
T
I
Y
L
G
N
G
Q
M
L
E
A
P
D
V
G
----
L
-
K
-------------------------------
31
HHSearch
53.27
32%
-123
- C1 -
4XCM
-
?
A:
[127-245]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
S
---
P
L
L
-
R
A
V
L
R
Y
L
G
V
P
Y
K
Y
--
G
A
---
N
-
S
P
-------------------------
L
----------
A
L
D
C
S
A
F
V
A
Q
V
Y
A
E
L
G
V
A
L
P
R
T
T
K
E
Q
Y
Q
A
F
P
--
P
-
V
E
A
P
R
P
G
D
L
V
F
F
S
F
G
G
---
K
E
V
D
H
V
G
I
Y
L
G
R
G
V
F
A
H
A
S
S
Y
G
----
S
-
R
V
V
I
E
S
L
E
-------
A
P
F
Y
R
K
V
Y
R
G
A
R
R
V
M
--
21
PsiBlast_CBE
52.81
35%
-97
- C1 -
3I86
1
?
B:
[13-117]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
Y
V
I
-
K
R
M
G
S
Q
M
G
V
P
Y
S
W
--
G
G
---
G
-
S
L
------------
D
G
P
S
K
G
V
GDGANI
T
----------
G
F
D
C
S
G
L
M
R
Y
G
F
A
G
V
G
V
L
I
P
R
F
S
G
D
Q
Y
N
A
G
R
H
I
P
-
Q
D
Q
A
R
R
G
D
L
I
F
Y
G
-----
P
G
G
S
Q
H
V
T
M
Y
L
G
N
G
Q
M
L
E
A
S
G
S
---------------------------------------
26
HHSearch
51.82
39%
-112
- C- -
3PBI
-
RIPB_MYCTU
A:
[110-221]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
V
E
---
Y
V
I
-
R
R
A
G
S
Q
M
G
V
P
Y
S
W
--
G
G
---
G
-
S
L
QGPSKGVDSGAN
T
------------
V
----------
G
F
D
C
S
G
L
V
R
Y
A
F
A
G
V
G
V
L
I
P
R
F
S
G
D
Q
Y
N
A
G
R
H
V
P
-
P
A
E
A
K
R
G
D
L
I
F
Y
G
P
G
-----
G
G
Q
H
V
T
L
Y
L
G
N
G
Q
M
L
E
A
S
G
S
A
----
G
-
K
V
------------------------------
12
PsiBlast_PDB
51.28
36%
-96
- C- -
4Q4N
-
A:
[1082-1189]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
Y
V
I
-
R
R
G
M
S
Q
I
G
V
P
Y
S
W
--
G
G
---
G
-
N
A
------------
A
GPSKGIDSGAG
T
V
----------
G
F
D
C
S
G
L
V
L
Y
S
F
A
G
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
-
S
S
Q
M
R
R
G
D
V
I
F
Y
G
P
N
G
S
--
Q
A
V
T
---
I
Y
L
G
N
G
Q
M
L
E
A
P
D
V
G
----
L
-
K
-------------------------------
30
HHSearch
50.83
33%
-114
- C- -
4LJ1
-
?
A:
[41-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
T
D
---
V
V
I
-
A
R
G
L
S
Q
R
G
V
P
F
S
W
--
A
G
---
G
-
G
I
SGPTRGTGTGIN
T
------------
V
----------
G
F
D
A
S
G
L
I
Q
Y
A
Y
A
G
A
G
L
K
L
P
R
S
S
G
Q
M
Y
K
V
G
Q
K
V
L
-
P
Q
Q
A
R
K
G
D
L
I
F
Y
G
P
E
-----
G
T
Q
S
V
A
L
Y
L
G
K
G
Q
M
L
E
V
G
-----------------------------------------
29
HHSearch
50.71
40%
-91
- C1 -
4Q4G
-
X:
[1079-1190]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
S
E
---
Y
V
I
-
R
R
G
M
S
Q
I
G
V
P
Y
S
W
--
G
G
---
G
-
N
A
AGPSKGIDSGAG
T
------------
V
----------
G
F
D
A
S
G
L
V
L
Y
S
F
A
G
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
-
S
S
Q
M
R
R
G
D
V
I
F
Y
G
P
N
-----
G
S
Q
H
V
T
I
Y
L
G
N
G
Q
M
L
E
A
P
D
V
G
----
L
-
K
V
------------------------------
5
PsiBlast_PDB
50.68
34%
-105
- C- -
3PBI
-
RIPB_MYCTU
A:
[104-217]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
A
N
A
R
Q
A
V
E
---
Y
V
I
-
R
R
A
G
S
Q
M
G
V
P
Y
S
W
--
G
G
---
G
-
S
L
------------
Q
GPSKGVDSGAN
T
V
----------
G
F
D
C
S
G
L
V
R
Y
A
F
A
G
V
G
V
L
I
P
R
F
S
G
D
Q
Y
N
A
G
R
H
V
P
-
P
A
E
A
K
R
G
D
L
I
F
Y
G
---
P
-
G
G
G
-
Q
H
V
T
L
Y
L
G
N
G
Q
M
L
E
A
S
G
S
---------------------------------------
13
PsiBlast_PDB
50.13
35%
-83
- C1 -
4Q4G
-
X:
[1082-1189]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
Y
V
I
-
R
R
G
M
S
Q
I
G
V
P
Y
S
W
--
G
G
---
G
-
N
A
------------
A
GPSKGIDSGAGT
V
----------
G
F
D
A
S
G
L
V
L
Y
S
F
A
G
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
-
S
S
Q
M
R
R
G
D
V
I
F
Y
G
-----
P
N
G
S
Q
H
V
T
I
Y
L
G
N
G
Q
M
L
E
A
P
D
V
G
----
L
-
K
-------------------------------
2
PsiBlast_PDB
50.09
36%
-100
- C- -
3PBC
-
RIPA_MYCTU
A:
[344-451]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
Y
V
I
-
R
R
G
M
S
Q
I
G
V
P
Y
S
W
--
G
G
---
G
-
N
A
------------
A
GPSKGIDSGAGT
V
----------
G
F
D
C
S
G
L
V
L
Y
S
F
A
G
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
-
S
S
Q
M
R
R
G
D
V
I
F
Y
G
-----
P
N
G
S
Q
H
V
T
I
Y
L
G
N
G
Q
M
L
E
A
P
D
V
G
----
L
-
K
-------------------------------
11
PsiBlast_PDB
49.41
47%
-120
- C1 -
2FG0
2
?
A:
[126-202]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
W
--
G
G
---
T
V
G
P
------------------------------------
N
Y
D
C
S
G
L
M
Q
A
A
F
A
S
V
G
I
W
L
P
R
D
A
Y
Q
Q
E
G
F
T
Q
P
I
T
-
I
A
E
L
V
A
G
D
L
V
F
F
G
T
S
----
Q
K
A
T
H
V
G
L
Y
L
A
D
G
Y
Y
I
H
S
S
-----------------------------------------