@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05100: (2016-06-08 )
MRKKRVITCVMAASLTLGSLLPAGYASAKEDSKTTPSYEELALHYKMKSEKISSNGKLVEIEYVSGNETHKVQMNGNNHTVKVDGIEQKGLNFEYDENVAKRTNYENNNLKSNEFTTQAAKPKKGYHYVGTLSGHTKAAKNALSVTMSLVGIVPGLGWGSKAATILFSYWAKEQIPDAYYKYDLYEKGAMTDSWYQYATVQFFEDKAHKKKMGKPWTSTPAKVDLPNS
Atome Classification :
(20 SA)
--------------------------------------------------------------.........10........20........30------------........40........50.......-----------.60......-..70----------........80........90-------...------.--------....100.......110---.------.......120-...---------------.....130.......140.......-----150...---....160------------------------.......170....---...180-.....-------..190.......-----200.......210-........220......--------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------MRK
K
R
V
I
T
C
V
M
A
A
S
L
T
L
G
S
LLPAGYASAKED------------SKTTP
S
Y
E
E
L
A
L
H
Y
K
MKSEKISSNG
K
L
-----------
V
E
I
E
Y
VSGN-
E
T
H
K
----------
V
Q
MNGNN
H
T
V
K
VDGIEQKGL-------NFE------Y--------DE
N
V
A
K
RTNYENNNLK----S------NEFTTQAAK--PKK---------------G
Y
H
Y
V
G
TLSGH
T
K
A
A
K
N
A
L
S
V
T
M
S
L
-----
V
G
IVPG---LGWGS
K
A
------------------------
A
T
I
L
F
S
Y
W
A
K
EQIP---
D
A
Y
Y
KY-DLYEK-------GAMTDS
W
Y
Q
Y
A
T
-----
V
Q
F
F
E
D
K
A
H
K
K
K--MGKPWTSTP
A
K
VDLPNS--------------------------------------
20
Fugue
76.08
16%
-57
* C5 *
2A35
-
?
A:
[4-215]
----------------------------------------------------------------
T
P
K
R
V
L
L
A
G
A
T
G
L
T
G
E
H
L
L
D
R
I
L
S
E
P
T
L
A
------------
K
V
I
A
P
A
R
K
A
L
A
E
H
P
R
L
D
N
P
V
G
P
L
A
E
L
L
-----------
P
Q
L
D
---
G
S
-
I
D
T
A
----------
F
C
C
L
G
T
T
I
K
E
A
G
S
E
E
A
F
R
A
V
-------
D
F
D
------
L
--------
P
L
A
V
G
K
R
A
L
E
----
M
G
----
A
------
R
H
Y
L
V
V
S
A
L
GA
D
A
K
---------------
S
S
I
F
Y
N
R
V
K
G
E
L
E
Q
A
L
Q
E
Q
G
W
P
-
Q
L
-----
T
I
A
R
P
S
---
L
L
F
G
P
R
E
------------------------
E
F
R
L
A
E
I
L
A
A
P
I
A
G
-------
K
Y
-
H
G
I
E
A
-------
C
D
L
A
R
A
L
W
R
L
A
L
E
E
G
K
G
V
R
F
V
E
S
D
E
L
R
K
L
--
G
K
G
S
---------------------------------------------------
24
Fugue
73.17
19%
-75
* C4 *
1K8K
-
ARPC4_BOVIN
F:
[2-167]
----------------------------------------------------------TAT
L
R
P
Y
L
S
A
V
R
A
T
L
Q
A
A
L
C
L
E
N
F
----------
S
------------
S
Q
V
V
E
R
------
H
N
K
P
E
V
E
V
R
S
S
K
E
L
L
-----------
L
Q
P
V
T
I
S
R
N
-
E
K
E
K
----------
V
L
I
E
G
S
I
N
S
V
R
V
-
S
I
A
V
K
Q
A
-------
D
E
I
------
E
--------
K
I
L
C
H
K
F
M
R
F
M
M
M
--
R
----
A
------
E
N
F
F
I
L
R
R
K
--
P
V
E
---------------
G
Y
D
-------------------------------------------------------------------
I
S
F
L
I
T
N
F
H
T
E
Q
M
Y
--------------
K
-------
H
K
L
V
D
F
V
I
H
F
-------
M
E
E
I
D
K
E
I
S
E
M
K
--
L
S
V
N
A
R
A
R
I
V
A
E
E
F
L
K
N
--------------------------------------
17
PsiBlast_PDB
71.21
24%
-21
- C5 -
2FNU
2
PSEC_HELPY
A:
[74-184]
----------------------------------------------------------------
R
N
E
I
I
T
T
P
I
S
F
V
A
T
A
N
M
L
L
E
S
G
Y
T
P
V
F
A
G
------------
I
K
N
D
G
N
I
D
E
L
A
L
E
-
K
L
I
N
E
R
T
K
A
---
I
-----------
V
S
V
D
Y
A
G
K
S
V
E
V
E
S
----------
V
Q
K
L
C
K
K
H
S
----------
L
-------
S
F
L
------
S
--------
D
S
S
H
A
L
G
S
E
Y
Q
N
K
K
V
G
GFAL
A
------
S
V
F
S
F
H
A
I
K
--
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
69.27
24%
-19
- C5 -
2FN6
1
PSEC_HELPY
A:
[74-184]
----------------------------------------------------------------
R
N
E
I
I
T
T
P
I
S
F
V
A
T
A
N
M
L
L
E
S
G
Y
T
P
V
F
A
G
------------
I
K
N
D
G
N
I
D
E
L
A
L
E
-
K
L
I
N
E
R
T
K
A
---
I
-----------
V
S
V
D
Y
A
G
K
S
V
E
V
E
S
----------
V
Q
K
L
C
K
K
H
S
----------
L
-------
S
F
L
------
S
--------
D
S
S
H
A
L
G
S
E
Y
Q
N
K
K
V
G
GFAL
A
------
S
V
F
S
F
H
A
I
K
--
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
68.53
24%
-16
- C5 -
2FNI
1
PSEC_HELPY
A:
[74-184]
----------------------------------------------------------------
R
N
E
I
I
T
T
P
I
S
F
V
A
T
A
N
M
L
L
E
S
G
Y
T
P
V
F
A
G
------------
I
K
N
D
G
N
I
D
E
L
A
L
E
-
K
L
I
N
E
R
T
K
A
---
I
-----------
V
S
V
D
Y
A
G
K
S
V
E
V
E
S
----------
V
Q
K
L
C
K
K
H
S
----------
L
-------
S
F
L
------
S
--------
D
S
S
H
A
L
G
S
E
Y
Q
N
K
K
V
G
GFAL
A
------
S
V
F
S
F
H
A
I
K
--
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
62.64
17%
-78
* C8 *
4TKO
2
?
B:
[3-349]
HRIEYAITNAVFVKADELSYLSFRVSGKVIEVYKDLGDYVKRGEALAKLDPTYYELEKRTLE
K
K
M
S
A
L
L
E
K
K
K
A
L
E
I
K
I
Q
K
L
E
K
G
L
H
I
S
L
S
A
K
------------
K
L
K
V
E
S
L
K
K
K
R
E
A
L
R
E
K
L
L
Q
V
E
E
K
I
K
L
-----------
V
K
L
D
W
E
R
Y
K
-
S
L
F
Q
----------
K
G
L
I
P
R
R
K
F
E
E
V
D
T
N
L
K
V
L
L
H------
E
R
E
------
Y
--------
L
E
K
S
I
Q
E
I
N
T
E
I
K
R
A
K
----
K
GIENAR
N
E
F
K
T
I
E
E
L
--
K
K
E
---------------
L
S
S
L
E
E
E
I
K
S
L
K
E
R
I
K
T
A
E
Q
K
I
K
D
T
-----
V
L
I
A
P
F
---
D
G
V
V
A
K
R
FISRGDVVRAGQPAFALVNPESFY
V
E
V
L
L
E
E
T
K
L
K
G
V
K
VGN
K
A
Y
V
R
L
-
D
A
Y
P
D
-------
I
L
F
E
G
V
V
E
E
I
S
P
-----
V
Q
R
I
P
V
K
I
K
I
T
K
GD
L
S
L
L
R
V
G
M
G
G
E
V
E
I
R
R
T
--------------------------------------
25
Fugue
57.78
20%
-17
- C1 -
4M02
2
A:
[36-204]
------------------------------------------------------------------
A
V
T
Q
V
R
Y
V
D
V
T
T
G
K
D
I
I
P
P
K
T
Y
S
G
N
V
D
------------
Q
V
V
T
I
D
N
Q
Q
S
A
L
T
A
K
------------------------
G
Y
N
Y
T
S
V
D
-
S
S
Y
A
----------
S
T
Y
N
D
T
N
K
T
V
K
M
T
----------------------------------
N
A
G
Q
S
V
T
Y
Y
F
T
D
V
K
----
A
------
P
T
V
T
V
G
N
Q
T
--
I
E
V
---------------
G
K
T
M
N
P
I
V
L
T
T
T
D
N
G
T
G
--
T
V
T
N
T
V
-----
T
G
L
P
S
G
---
L
S
Y
D
S
A
T
------------------------
N
S
I
I
--------------------------------
G
T
P
T
K
I
G
Q
S
T
V
T
-----
V
V
S
T
D
Q
A
---------
N
N
K
S
T
T
T
F
T
I
N
V
V
D
T
T-------------------------------------
27
Fugue
52.43
17%
-42
- C4 -
4P6V
2
NQRD_VIBCH
D:
[7-208]
--------------------------------------------------------------
L
K
K
S
V
L
A
P
V
L
D
N
N
P
I
A
L
Q
V
L
---
G
V
C
S
A
L
A
V
--------------
T
T
K
L
E
T
A
F
V
M
T
L
A
V
M
F
V
T
A
L
S
N
F
F
V
-----------
S
L
I
R
----
N
-
V
R
I
I
----------
V
Q
M
A
I
I
A
S
L
V
I
V
V
D
Q
I
L
K
-----------------------------
D
I
S
K
Q
L
S
V
F
V
G
L
I
I
----
T
------
N
C
I
V
M
G
R
A
E
--
A
F
A
----------------------------------
P
I
P
S
F
I
-----
D
G
I
G
N
G
---
L
G
Y
G
--
F
------------------------
V
L
M
T
V
G
F
F
R
E
L
L
G
S
---
G
K
L
F
G
L
-
E
V
L
P
N
-------
G
L
M
----------------
L
L
A
P
S
A
F
F
L
I
--
G
F
M
I
W
A
I
R
T
F
K
P
E
Q
V
E
A
--------------------------------------
5
PsiBlast_PDB
49.68
24%
-67
- C5 -
4D5G
4
CHDH_AZOSP
A:
[413-490]
---------------------------------------------------------------
R
P
R
R
L
V
T
S
M
A
E
G
I
L
G
C
G
F
P
M
A
L
G
A
Q
L
A
E
P
N
------------
S
R
V
F
L
G
T
G
D
G
A
L
Y
Y
H
F
N
E
F
R
V
A
V
E
H
K
L
-----------
P
V
I
T
M
V
F
T
N
-
E
S
Y
G
----------
A
N
W
T
L
M
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.15
24%
-68
- C5 -
2PGN
5
CHDH_AZOSP
A:
[413-490]
---------------------------------------------------------------
R
P
R
R
L
V
T
S
M
A
E
G
I
L
G
C
G
F
P
M
A
L
G
A
Q
L
A
E
P
N
------------
S
R
V
F
L
G
T
G
D
G
A
L
Y
Y
H
F
N
E
F
R
V
A
V
E
H
K
L
-----------
P
V
I
T
M
V
F
T
N
-
E
S
Y
G
----------
A
N
W
T
L
M
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
47.99
24%
-68
- C5 -
4D5E
5
CHDH_AZOSP
A:
[413-490]
---------------------------------------------------------------
R
P
R
R
L
V
T
S
M
A
E
G
I
L
G
C
G
F
P
M
A
L
G
A
Q
L
A
E
P
N
------------
S
R
V
F
L
G
T
G
D
G
A
L
Y
Y
H
F
N
E
F
R
V
A
V
E
H
K
L
-----------
P
V
I
T
M
V
F
T
N
-
E
S
Y
G
----------
A
N
W
T
L
M
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
46.90
24%
-66
- C5 -
2PGO
4
CHDH_AZOSP
A:
[413-490]
---------------------------------------------------------------
R
P
R
R
L
V
T
S
M
A
E
G
I
L
G
C
G
F
P
M
A
L
G
A
Q
L
A
E
P
N
------------
S
R
V
F
L
G
T
G
D
G
A
L
Y
Y
H
F
N
E
F
R
V
A
V
E
H
K
L
-----------
P
V
I
T
M
V
F
T
N
-
E
S
Y
G
----------
A
N
W
T
L
M
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
43.34
23%
28
* C7 *
2EEK
2
TRY1_GADMO
A:
[51-128]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
H
H
I
R
V
N
E
G
T
E
Q
-----------
Y
I
------
S
--------
S
S
S
V
I
R
H
P
N
Y
S
S
Y
N
I
N
----
N
------
D
I
M
L
I
K
L
T
K
--
P
A
T
---------------
L
N
Q
Y
V
H
A
V
A
L
P
T
E
C
A
A
D
A
T
M
C
T
V
S
----------------
G
W
G
N
T
M
------------------------
S
S
V
-----------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
42.11
24%
-4
- C6 -
2X40
1
?
A:
[382-463]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
G
I
K
E
R
G
L
-------
N
F
D
E
E
L
A
K
T
Y
--------
E
D
Y
I
K
K
M
R
E
T
E
E
Y
K
P
R
------------------
I
K
--
P
K
L
---------------
P
E
N
F
L
S
E
K
E
I
H
K
L
A
K
K
N
D
V
A
V
I
--
V
-----
I
S
R
I
S
G
---
E
G
Y
D
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
41.57
24%
7
- C6 -
2X41
2
?
A:
[382-463]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
G
I
K
E
R
G
L
-------
N
F
D
E
E
L
A
K
T
Y
--------
E
D
Y
I
K
K
M
R
E
T
E
E
Y
K
P
R
----
R
------------
I
I
K
--
P
K
L
---------------
P
E
N
F
L
S
E
K
E
I
H
K
L
A
K
K
N
D
V
A
V
I
--
V
-----
I
S
R
I
S
G
---
E
G
Y
D
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
41.45
24%
-8
- C6 -
2X42
2
?
A:
[382-463]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
G
I
K
E
R
G
L
-------
N
F
D
E
E
L
A
K
T
Y
--------
E
D
Y
I
K
K
M
R
E
T
E
E
Y
K
P
R
----
R
------------
I
I
K
--
P
K
L
---------------
P
E
N
F
L
S
E
K
E
I
H
K
L
A
K
K
N
D
V
A
V
I
--
V
-----
I
S
R
I
S
G
---
E
G
Y
D
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.36
27%
14
- C6 -
1UYQ
1
BGLA_PAEPO
A:
[362-439]
--------------------------------------------------------------------------------------------------------------------------------
N
G
K
V
-----------
Q
D
D
R
R
I
S
Y
M
-
Q
Q
H
L
----------
V
Q
V
----
H
R
A
I
H
D
G
L
H
V
K
G
Y
M
A
WSLLD
N
F
E
------
W
--------
A
E
G
Y
N
M
R
F
G
-----
M
I
----
H
------
V
D
F
R
T
Q
V
R
T
--
P
K
Q
---------------
S
Y
Y
W
Y
R
N
V
V
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
39.47
19%
22
- C8 -
1Z0P
-
?
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
Y
E
K
E
------------------------
F
L
K
D
F
E
D
W
V
K
T
Q
I
Q
---
V
N
Q
L
A
M
-
A
T
S
Q
E
V
AD
E
R
A
K
D
A
F
I
R
Y
E
S
K
L
D
A
-----
Y
E
F
L
L
G
K
F
D
N
Y
K
--
N
G
K
A
F
H
D
I
P
D
E
--------------------------------------------
21
Fugue
39.35
11%
-30
- C2 -
4AG4
4
DDR1_HUMAN
A:
[5-344]
-------------------------------------------------------KCRYALG
M
Q
D
R
T
I
P
D
S
D
I
S
A
S
S
S
W
S
D
S
T
A
A
R
H
S
R
L
E
S
S
DGDG
A
W
C
P
AGSV
F
P
K
E
E
E
Y
L
Q
V
D
L
Q
R
L
H
L
V
A
L
V
G
T
Q
G
R
H
AGGLGKEFSR
S
Y
R
L
R
Y
S
R
D
G
-
R
R
W
M
G
W
K
D
RWGQEV
I
S
G
N
E
D
P
E
G
V
V
L
K
D
L
G
P
P
M
V
-------
A
R
L
------
V
R
F
Y
P
R
A
DR
V
M
S
V
C
L
R
V
E
L
Y
G
C
L
W
R
----
D
------
G
L
L
S
Y
T
A
P
V
--
G
Q
T
M
YLSEAVYLNDSTYD
G
H
T
V
G
G
L
Q
Y
G
G
L
G
Q
L
A
D
G
V
V
G
L
D
D
F
RKSQE
L
R
V
W
P
G
YD
Y
V
G
W
S
N
H
S
FSSG
Y
-------------------
V
E
M
E
F
E
F
D
R
L
R
A
F
Q
---
A
M
Q
V
H
C
N
N
M
H
T
L
-------
G
A
R
L
---
P
G
G
V
E
-----
C
R
F
R
R
G
P
A
M
A
W
E
--
G
E
P
M
R
H
N
L
G
G
N
L
G
D
P
R
A
R
A
V
S
V
P
LGGRVAR
F
L
Q
C
R
F
L
F
AGP
W
L
L
F
S
E
I
S
F
I
S
D
A
A
9
PsiBlast_PDB
37.87
33%
78
- C- -
3CBE
-
GFP_AEQVI
A:
[104-160]
------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
-
Y
K
T
R
----------
A
E
V
K
F
E
G
D
T
L
-
V
N
R
I
E
L
K
G
I
-------
D
F
K
------
E
--------
D
G
N
I
L
G
H
K
L
E
Y
N
Y
N
C
-----
S
------
N
V
Y
I
T
-
A
D
K
--
Q
K
N
---------------
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------