@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05150: (2016-06-08 )
MKNFVIDQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHDEIQFVLILKGIALFQINEEKIEVHEGDGLFINSGYLHMAEEKEGSDCTYICLNVSPHFVLSQELYSSYVQPYMFSTNLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDITMQLTLMWKNLVVNGFQLEYDQSEMIKSHRMKQMLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDYRIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYKKMNS
Atome Classification :
(20 SA)
------------.........10........20-.........30........40........50........--60---..--....-----...70........80.......--.90........100...--....110...------------------------------....120.......130.......140.......150......----------------------.160.......170---------.........180---.......190.......200-.-......210...---....220.......230.......240.......250-........260.......270.......280.......290------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------MKNF
V
I
D
Q
N
L
K
E
L
T
EHRTVE--L
P
V
A
C
Y
K
T
T
INQNI
N
G
Y
I
P
L
H
WHDE
I
Q
F
V
L
I
LK
G
I
A
L
F
Q
--I----
N
E
--
E
K
I
E
-----VHEG
D
G
L
F
INSG
Y
L
H
M
AEEKEG--SD
C
T
Y
I
C
L
NVSPH
F
V
L
S
--
Q
E
L
Y
S
S
Y
V
Q
P
------------------------------
Y
MFSTNL
P
Y
L
F
LAG
N
Q
Q
W
A
K
N
I
L
D
A
V
K
K
I
N
Q
L
I
Q
QKT
S
L
Y
E
I
D
----------------------
I
T
M
Q
L
T
L
M
W
K
N
L-----------VVNG
F
Q
L
EY
D
Q
S
---
E
M
I
K
S
H
R
M
K
Q
M
L
N
W
I
H
L
H
Y
V
-
E
-KI
T
L
E
D
I
A
K
AGQ---L
S
R
S
E
C
C
R
Y
F
K
R
M
LNK
T
P
L
R
Y
V
M
D
Y
R
I
Q
K
S
L
L
L
L
QH--PESN
V
T
E
V
S
Y
Q
VGFN
S
T
S
Y
F
I
S
K
F
Q
Q
A
MNMTPL
S
Y
KKMNS-------------
50
Fugue
88.29
18%
-134
- C2 -
4FE7
1
XYLR_ECOLI
A:
[21-409]
MFT
K
R
H
R
I
T
L
L
F
N
A
N
K
A
Y
D
R
Q
V
V
E
G
V
G
E
Y
L
Q
A
S
Q
S
E
W
D
I
F
I
E
E
F
R
W
L
G
D
G
V
I
A
D
F
D
D
K
Q
I
E
Q
A
L
A
D
V
D
V
P
I
V
G
--
V
G
G
S
Y
H
L
--
A
E
S
Y
PP
V
H
Y
I
A
T
D
N
Y
A
L
V
E
S
A
F
L
H
L
K
E
-
K
G
V
--
N
R
F
A
F
Y
G
L
P
E
S
S
G
K
R
W
A
--
T
E
R
E
Y
A
F
R
Q
L
V
AEEK
Y
R
G
V
V
Y
Q
G
LETAPEN
W
Q
H
A
Q
N
R
L
A
D
W
L
Q
T
L
P
P
Q
T
G
I
I
A
V
T
D
A
R
A
R
H
I
L
Q
V
C
E
H
L
H
I
P
V
P
E
K
L
C
V
I
G
I
D
NEELTRYLSRV
A
L
S
S
V
A
Q
G
A
R
Q
M
G
Y
Q
A
A
K
L
L
H
R
L
L
D
K
E
E
M
P
L
Q
R
I
L
V
P
P
V
R
V
I
E
R
R
S
TDY
R
S
L
T
D
P
A
V
I
Q
A
M
H
Y
I
R
N
H
A
C
-
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
---
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E------------
34
HHSearch
69.95
29%
-142
- C2 -
3LSG
1
?
A:
[3-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
E
L
I
Q
N
I
I
E
E
S
Y
T
D
S
-
Q
F
T
L
S
V
L
S
E
K
L
D
---
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
L
L
L
L
T
--
T
E
L
K
N
Y
E
I
A
E
Q
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
E
----------------
29
HHSearch
68.47
23%
-131
- C2 -
3OIO
2
?
A:
[6-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
K
L
T
E
A
V
S
L
M
E
A
N
I
E
-
E
-
P
L
S
T
D
D
I
A
Y
Y
V
G
---
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
Q
Q
--
T
S
K
S
I
V
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
--------------
26
HHSearch
68.36
25%
-160
- C2 -
4FE7
-
XYLR_ECOLI
A:
[302-407]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
D
P
A
V
I
Q
A
M
H
Y
I
R
N
H
A
C
-
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
---
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
--------------
45
Fugue
68.26
20%
-129
- C2 -
1D5Y
2
ROB_ECOLI
A:
[1-123]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
G
I
I
R
D
L
L
I
W
L
E
G
H
L
D
-
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
---
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
E
WSAFGIRPPLRL
G
25
HHSearch
68.04
14%
-118
- C2 -
3GBG
1
TCPN_VIBC3
A:
[19-270]
------------------------------------------------
T
Y
I
F
N
N
L
Y
I
N
D
Y
K
M
F
W
I
D
S
G
I
A
K
L
I
--
D
----
K
N
CL
V
S
Y
E
-----
I
N
S
S
S
I
I
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
L
SD
E
N
I
N
V
S
V
I
T
I
S
D
S
F
I
R
S
L
K
S
Y
I
L
G
----------------------------------------
N
K
D
L
L
L
W
N
C
----
E
H
N
D
I
A
V
L
S
E
V
V
N
G
F
R
E
I
-
N
Y
S
D
E
F
----------------------
L
K
V
F
F
S
G
F
F
S
K
V
-----------
E
K
K
Y
N
S
--
I
--
F
---
I
T
D
D
L
D
A
M
E
K
I
S
C
L
V
K
S
D
I
T
-
R
-
N
W
R
W
A
D
I
C
G
E
L
R
---
T
N
R
M
I
L
K
K
E
L
E
-
S
R
G
V
K
F
R
E
L
I
N
S
I
R
I
S
Y
S
I
S
L
M
K
T
--
G
E
F
K
I
K
Q
I
A
Y
Q
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
--------------
3
PsiBlast_PDB
67.66
28%
-161
- C2 -
4FE7
-
XYLR_ECOLI
A:
[309-408]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
M
H
Y
I
R
N
H
A
C
-
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
---
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
-------------
30
HHSearch
67.57
23%
-149
- C2 -
2K9S
-
A:
[3-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
A
-
D
S
N
F
D
I
A
S
V
A
Q
H
V
C
---
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
K
L
L
L
S
T
--
T
R
M
P
I
A
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
--------------
7
PsiBlast_PDB
65.86
26%
-140
- C2 -
2K9S
-
A:
[3-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
A
-
D
---
S
N
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
K
L
L
L
S
T
--
T
R
M
P
I
A
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
-----------------
32
HHSearch
65.55
23%
-128
- C2 -
3W6V
2
?
A:
[37-139]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
L
A
E
V
V
A
W
A
L
E
H
L
H
-
E
-
Q
F
D
V
E
T
L
A
A
R
A
Y
---
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
A
Q
R
L
L
E
T
--
S
D
Y
S
V
D
E
V
A
G
R
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
A
A
Y
R
A
A
---------------
47
Fugue
65.33
13%
-111
- C2 -
3GBG
1
TCPN_VIBC3
A:
[4-273]
-------------------------------
K
--
K
S
F
Q
T
N
V
Y
R
M
S
K
F
D
T
Y
I
F
N
N
L
Y
I
N
D
Y
K
M
F
W
I
D
S
G
I
A
K
L
I
D
K
N
----
C
L
--
V
S
Y
E
-----
I
N
S
S
S
I
I
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
L
--
S
D
E
-----
N
I
N
V
S
V
I
T
I
--
S
D
S
F
I
R
S
L
K
S
------------------------------
Y
I
L
G
N
K
-
D
L
L
L
W
N
C
E
H
N
D
I
A
V
L
S
E
V
V
N
G
F
R
E
I
N
Y
S
-------------------------------
D
E
F
L
K
V
F
F
S
G
F
-----------
F
S
K
V
E
K
K
Y
N
S
I
F
---
I
T
D
D
L
D
A
M
E
K
I
S
C
L
V
K
S
D
I
T
-
R
-
N
W
R
W
A
D
I
C
G
E
L
R
---
T
N
R
M
I
L
K
K
E
L
E
S
R
-
G
V
K
F
R
E
L
I
N
S
I
R
I
S
Y
S
I
S
L
M
K
T
--
G
E
F
K
I
K
Q
I
A
Y
Q
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
GV-----------
9
PsiBlast_PDB
65.33
30%
-132
- C2 -
3LSG
1
?
A:
[9-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
I
E
E
S
Y
T
-
D
S
Q
F
T
L
S
V
L
S
E
K
L
D
---
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
L
L
L
L
T
--
T
E
L
K
N
Y
E
I
A
E
Q
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
E
----------------
35
HHSearch
64.46
22%
-134
- C2 -
1D5Y
2
ROB_ECOLI
A:
[3-108]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
R
D
L
L
I
W
L
E
G
H
L
D
-
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
---
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
---------------
31
HHSearch
64.03
19%
-152
- C2 -
3MN2
2
?
A:
[3-106]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
R
Q
V
E
E
Y
I
E
A
N
W
M
-
R
-
P
I
T
I
E
K
L
T
A
L
T
G
---
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
N
L
L
S
D
GA
T
P
T
T
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
--------------
4
PsiBlast_PDB
63.62
24%
-135
- C2 -
3W6V
2
?
A:
[37-133]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
L
A
E
V
V
A
W
A
L
E
H
L
H
-
E
-
Q
F
D
V
E
T
L
A
A
R
A
Y
---
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
A
Q
R
L
L
E
T
--
S
D
Y
S
V
D
E
V
A
G
R
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
---------------------
2
PsiBlast_PDB
63.59
28%
-138
- C2 -
4FE4
-
XYLR_ECOLI
A:
[289-388]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
M
H
Y
I
R
N
H
A
C
-
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
---
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
-------------
5
PsiBlast_PDB
62.90
22%
-131
- C2 -
1D5Y
2
ROB_ECOLI
A:
[5-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
D
L
L
I
W
L
E
G
H
L
D
-
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
---
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
----------------
33
HHSearch
62.40
23%
-170
- C- -
3MKL
-
?
A:
[141-242]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
M
R
T
R
V
C
T
V
I
N
N
N
I
A
-
H
-
E
W
T
L
A
R
I
A
S
E
L
L
---
M
S
P
S
L
L
K
K
K
L
R
E
E
-
E
T
S
Y
S
Q
L
L
T
E
C
R
M
Q
R
A
L
Q
L
I
V
I
--
H
G
F
S
I
K
R
V
A
V
S
C
G
Y
H
S
V
S
Y
F
I
Y
V
F
R
N
Y
Y
G
M
T
P
T
E
Y
Q
E
R
---------------
1
PsiBlast_PDB
62.11
29%
-128
- C2 -
3OIO
1
?
A:
[22-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-
P
L
S
T
D
D
I
A
Y
Y
V
G
---
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
Q
Q
--
T
S
K
S
I
V
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
---------------------
27
HHSearch
60.62
20%
-136
- C2 -
3OOU
1
?
A:
[4-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
I
I
Q
N
V
L
S
Y
I
T
E
H
F
S
-
E
-
G
M
S
L
K
T
L
G
N
D
F
H
---
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
L
Q
--
T
K
D
N
L
T
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
--------------