@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05160: (2016-06-08 )
MNTSNRRMGLFYVITGATCWGIGGTVAKKLFQEYQIDVNWLVTTRLLTAGMLLLMLQLFRKDRSQVIEVWKHKASAGQLLIFGLLGMLAVQYTYMASIQHGNAAVATLLQYLSPVIVIIYTLLRKQTVLTKQDIITVVLALVGCFFLLTNGSMSQLSVPAAAVVWGVLSGFAAAFYTLYAVGLLNKFDSLVVVGWAMIIGGFALGFIHPPWQLDFQRLTAEAYAYILFVILFGTMIAFWFFIKSLESLSPKETSLLGSLEPLSAVVTTVVWLKAPFGSFQWIGAICIIGITLILALHKEPSMESEKSILKIRNHANRDI
Atome Classification :
(19 SA)
------......-.---..10.--.......----20...--.....30-.-.......-------40........50...--------...-..60--.......-----..70........80........90....--------.....100----------...-----------...-.110.-----......120.--------------......130..-.....---140.......150--........160....-------...170.......180---------------..-----------------.-.....---190..-----------------.....200-----------------.......210..------------.....220.......230.......240-------........250...-....260....---------.---------..270.......280....--..--------------.290...---------------------....300.......310.......---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------MNTSN
R
-
R
---
M
G
L
F
Y
--
V
I
TG
A
T
C----WGI
G
G
--
T
V
A
K
K
L
F
-
Q
-
E
YQ
I
D
V
N
-------
W
L
V
T
T
R
L
L
T
A
G
M
L
L
L
--------
M
L
Q
-
L
F
R
---
K
D
R
S
Q
V
I
-----
E
V
W
K
HKASAG
Q
L
L
I
F
G
L
L
G
M
L
A
V
-
Q
Y
T
Y
--------
M
A
SIQHG
N
----------
A
A
V
-----------
A
T
L
-
L
Q
Y
L
S
-----
P
V
I
V
I
I
Y
T
L
L
--------------
R
K
QTVL
T
K
Q
D
I
-
I
T
V
V
L
---
A
L
V
G
C
F
F
L
LTNG---S
M
S
QLSV
P
A
A
A
V
V
W
G
-------
V
L
S
G
F
A
A
A
F
Y
T
L
Y
A
V
----------------
G
L
-----------------
L
-
N
K
F
D
S
---
L
V
V
V
G
-----------------
W
A
M
I
I
G
G
F
-----------------
A
L
GFIHPP
W
Q
L
D
------------
F
Q
R
L
T
A
E
A
Y
A
Y
I
L
F
V
I
L
F
G
T
M
I
A
F
W
F
F
--------
I
K
S
L
E
SLSP
K
E
T
S
L
-LGSL
E
P
L
S
A
V
V
---------
T
---------
T
V
V
W
L
KAPFGS
F
Q
W
I
G
A
I
C
--
I
I
--------------
G
I
T
L
I
L
A
---------------------LHKEPSM
E
S
E
K
S
I
L
K
I
RNHANRDI---------
20
Fugue
67.46
21%
-145
- C1 -
4Q6O
8
?
A:
[21-437]
MIEKAP
T
N
V
E
D
R
D
K
---
A
P
H
L
L
--
L
L
A
G
I
Q
G
----
D
E
P
G
G
--
F
N
A
T
N
L
F
L
M
-
H
Y
S
V
L
K
G
-------
L
V
E
V
V
P
V
L
N
K
P
S
M
L
R
NHRGLYGD
M
N
R
-
K
F
A
ALD
K
N
D
P
E
Y
P
-----
T
I
Q
E
I
K
S
L
I
A
K
P
S
I
D
A
V
L
H
L
H
D
G
-
G
G
Y
Y
RPVYVDAM
L
N
P
K
R
W
G
N
----------
C
F
I
I
DQDEVKGAKF
P
N
L
-
L
A
F
A
N
-----
N
T
I
E
S
I
N
A
H
L
LHPIE
E
Y
-------
H
L
K
N
T
R
T
A
Q
G
D
-
T
E
M
Q
K
---
A
-------
L
T
F
Y
---
A
I
N
Q
K
K
S
A
F
A
N
E
A
S
K
-------
E
L
P
L
A
S
R
V
F
Y
H
L
Q
A
I
E
---------------
G
L
-----------------
L
-
N
Q
L
N
I
---
P
F
K
R
D
FDLN
P
N
S
V
H
A
L
I
N
DKN
L
W
A
K
I
S
S
L
P
-----------------
K
M
P
L
F
N
L
R
P
K
L
N
H
F
P
L
P
H
NTK---
I
P
Q
I
P
I
E
S
N
A
Y
I
V
G
L
V
K
N
K
Q
E
V
F
L
K
Y
G
--------
N
K
L
M
T
R
L
S
P
F
Y
I
E
F
-
D
P
S
L
E
E
V
K
M
Q
I
---------
D
N
K
D
Q
M
V
K
IG
S
V
V
E
V
K
E
S
F
Y
I
H
A
M
D
N
I
R
A
--
N
V
IGFSVSNENKPNEA
G
Y
T
I
K
F
K
D--------------------
F
Q
K
R
F
S
L
D
K
Q
E
R
I
Y
R
I
E
F
Y
K
N
N
A
F
S
G
M
I
L
V
K
F
V
15
Fugue
67.37
18%
-120
- C2 -
1NTH
1
MTMB1_METBA
A:
[2-458]
------
T
F
R
K
S
F
-
D
---
C
Y
D
F
Y
D
R
A
K
V
G
E
K
C
T
QDD
W
D
L
M
K
I
P
M
K
A
M
E
L
K
-
Q
-
K
Y
G
L
D
F
K
GEFIPTD
K
D
M
M
E
K
L
F
K
A
G
F
E
M
L
--------
L
E
C
G
I
Y
C
---
T
D
T
H
R
I
V
K
Y
T
E
D
E
I
W
D
A
I
N
N
V
Q
K
E
F
V
L
G
T
-
G
R
D
A
V
-
N
V
R
K
R
S
VGDKA-
K
P
I
V
Q
G
G
P
TGSPISEDV
F
M
P
V
-----------
H
M
S
-
Y
A
L
E
K
-----
E
V
D
T
I
V
N
G
V
M
TSVRGKSPIPKS
P
Y
E
V
L
A
A
K
T
E
T
R
L
-
I
K
N
A
C
---
A
M
A
G
R
P
G
M
G
V
K
G
PET
S
L
S
A
Q
G
N
I
S
A
D
C
T
G
G
MTCT
D
S
H
E
V
S
Q
L
N
E
L
K
I
D
L
D
A
I
----------------
S
V
-----------------
I
-
A
H
Y
K
G
N
SD
I
I
M
D
E
-----------------
Q
M
P
I
F
G
G
Y
AGG
I
E
E
T
T
I
V
D
V
A
T
H
I
N
A
V
L
M
S
S
A
S
W
H
L
D
G
P
V
H
IRWGSTNT
R
E
T
L
M
I
A
G
W
A
C
A
T
I
S
E
F
T
D
I
L
S
G
N
Q
Y
Y
P
CAGPCT
E
M
C
L
L
E
A
S
A
Q
S
I
T
D
T
-
A
S
G
R
E
I
L
S
G
V
A
SAKGVVTDK
T
---------
T
G
M
E
A
R
M
M
G
E
V
A
R
A
T
A
G
V
E
--
I
S
--------------
E
V
N
V
I
L
D
K
L
V
S
L
YEKNYASAPAGKTFQE
C
Y
D
V
K
T
V
T
P
T
E
E
Y
M
Q
V
Y
D
G
A
R
K
K
L
E
D
L
GLVF--
1
PsiBlast_PDB
52.63
23%
-205
- C2 -
4KNF
1
PRRB_PRB02
A:
[32-211]
--------------------------------------------------------------------
V
S
F
W
L
V
T
A
G
M
L
A
A
--------
T
V
--
F
F
F
---
V
E
R
D
Q
V
S
-----
A
K
W
K
T
-----
S
L
T
V
S
G
L
I
T
G
I
A
F
W
H
Y
L
Y
--------
M
R
G
V
W
I
D
T
----------
G
D
T
-----------
P
T
V
-
F
R
Y
I
N
W
L
L
T
V
P
L
L
V
V
E
F
Y
L
I
--------------
L
A
A
C
T
S
V
A
A
S
L
-
F
K
K
L
L
---
A
--
G
S
L
V
M
L
G
A
G
---
F
A
G
E
A
G
L
--
A
P
V
L
P
A
-------
F
I
I
G
M
A
G
W
L
Y
M
I
Y
E
L
----------------
Y
M
GEGKAAVSTAS
P
A
V
N
S
A
Y
-
N
A
M
M
M
---
I
I
V
V
G
-----------------
W
A
I
Y
P
A
G
Y
-----------------
A
A
G
Y
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.74
20%
-203
- C2 -
4JQ6
2
?
A:
[17-191]
-------------------------------------------------------------------------
L
A
A
A
I
M
L
A
--------
S
T
V
-
F
F
F
---
V
E
R
S
D
V
P
-----
V
K
W
K
T
S
L
T
V
A
G
L
V
T
----
G
V
A
F
W
-
H
Y
L
Y
--------
M
R
G
V
W
I
Y
A
----------
G
E
T
-----------
P
T
V
-
F
R
Y
I
D
-----
W
L
I
T
V
P
L
Q
I
I
--------------
E
F
Y
L
I
I
A
---------
V
F
W
K
L
L
I
A
S
L
V
M
L
I
G
G
---
F
I
G
E
A
G
L
G
D
V
V
V
W
W
I
-------
V
--
G
M
I
A
W
L
Y
I
I
Y
E
I
----------------
F
L
-----------------
F
-
N
T
I
K
W
---
I
V
T
V
G
-----------------
W
A
I
Y
P
I
G
Y
-----------------
A
W
G
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
46.48
25%
-203
- C2 -
4HYJ
9
?
A:
[113-241]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
L
V
I
A
D
V
-
I
M
I
V
G
---
G
Y
I
G
E
S
S
I
N
I
A
G
---
G
F
T
Q
L
G
L
------
W
S
-------
Y
L
I
G
C
F
A
W
I
Y
I
I
Y
L
L
F
T
N
V
T
K
A
A
E
N
KP
A
P
I
R
D
A
-----------------
L
-
L
K
M
R
L
---
F
I
L
I
G
-----------------
W
A
I
Y
P
I
G
Y
-----------------
A
V
T
L
F
A
P
G
V
E
I
Q
------------
L
V
R
E
L
I
Y
N
F
A
D
L
T
N
K
V
G
F
G
-
L
I
A
F
-
F
A
--------
V
K
T
M
S
S
-----------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
42.19
10%
-195
- C2 -
3M73
4
TEHA_HAEIN
A:
[1-313]
------
M
N
I
T
K
P
-
F
PLP
T
G
Y
F
G
--
I
P
L
G
L
A
A
----
L
S
L
A
W
--
F
H
L
E
N
L
F
-
P
A
A
R
M
V
S
D
V
-------
L
G
I
V
A
S
A
V
W
I
L
F
I
L
M
--------
Y
A
Y
-
K
L
R
---
Y
Y
F
E
E
V
R
-----
A
E
Y
H
S
P
V
R
F
S
F
I
A
L
I
P
I
T
T
M
L
V
G
-
D
I
L
Y
--------
R
W
N
P
L
I
A
E
----------
V
L
I
-----------
W
I
G
-
T
I
G
Q
L
-----
L
F
S
T
L
R
V
S
E
L
--------------
W
Q
G
G
V
F
E
Q
K
S
T
H
P
S
F
Y
L
---
P
A
V
A
A
N
F
T
S
A
S
S
---
L
A
L
L
G
Y
H
D
L
G
Y
L
F
F
G
-------
A
G
M
I
A
W
I
I
F
E
P
V
L
L
Q
----------------
H
L
-----------------
R
I
S
S
L
E
P
---
Q
F
R
A
T
-----------------
M
G
I
V
L
A
P
A
-----------------
F
V
C
V
S
---
A
Y
L
S
------------
I
N
H
G
E
V
D
T
L
A
K
I
L
W
G
Y
G
F
L
Q
L
F
F
L
L
R
L
--------
F
P
W
I
V
E
K
-
G
L
N
I
G
L
-
W
A
F
S
A
G
L
A
S
M
A
---------
N
---------
S
A
T
A
F
Y
H
G
N
V
L
Q
G
V
S
I
F
A
F
--
V
F
--------------
S
N
V
M
I
G
L
---------------------
L
V
L
M
T
I
Y
K
L
T
K
G
Q
F
F
L
-----------------
8
HHSearch
33.79
28%
-305
- C2 -
2JO1
-
PLM_HUMAN
A:
[22-39]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
A
G
I
L
--
F
I
--------------
L
G
I
L
I
V
L
---------------------
S
R
R
------------------------------
16
Fugue
30.75
23%
-408
- C2 -
4RVY
-
PSBT_THEEB
T:
[1-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
I
T
Y
V
F
I
F
A
C
I
I
A
L
F
F
F
--------
A
I
F
F
R
E
P
P
R
I
T
------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
30.20
23%
-361
- C- -
5E7C
-
?
T:
[1-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
I
T
Y
V
F
I
F
A
C
I
I
A
L
F
F
F
--------
A
I
F
F
R
E
P
P
R
I
T
------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
27.53
17%
-188
- C2 -
2JP3
-
FXYD4_RAT
A:
[23-40]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
G
G
L
L
--
C
I
--------------
A
G
I
A
L
A
L
---------------------
S
G
K
------------------------------
23
Fugue
27.25
20%
-10
* C2 *
5B16
-
DGCR8_HUMAN
B:
[1-25]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
N
---------------------
L
H
I
L
S
K
L
Q
E
E
M
K
R
L
A
E
E
R
E
E
T
R
-----------
19
Fugue
26.57
33%
156
- C2 -
4FTB
-
?
D:
[1-21]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
M
W
E
R
V
K
S
I
I
K
S
S
L
A
A
A
S
N
I
---------
5
HHSearch
22.91
12%
-
- C2 -
3B5D
1
EMRE_ECOLI
A:
[31-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
S
V
G
T
I
I
C
Y
C
A
S
F
W
L
L
--------
A
Q
T
L
A
Y
I
P
T
G
I
A
Y
A
I
W
S
G
V
G
I
V
L
I
S
L
---------
L
---------
S
W
G
F
F
G
Q
R
L
D
L
P
A
I
I
G
M
M
L
--
I
C
--------------
A
G
V
L
I
I
N
---------------------
L
L
S
------------------------------
9
HHSearch
20.86
0%
-247
- C2 -
3RKO
-
?
J:
[134-167]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
P
Y
V
L
A
V
E
L
A
S
M
L
L
LA
G
L
--------------
V
V
A
F
H
V
G
---------------------
R
E
E
R
A
G
E
V
-------------------------
13
HHSearch
19.63
12%
-149
- C2 -
5AZB
4
LGT_ECOLI
A:
[261-286]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
M
G
Q
I
L
S
I
P
M
--
I
V
--------------
A
G
V
I
M
M
V
---------------------
W
A
Y
R
R
S
---------------------------
11
HHSearch
18.56
21%
-
- C2 -
2ZXE
-
?
G:
[25-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
A
V
L
--
C
V
--------------
I
G
I
I
I
L
L
---------------------
A
G
K
------------------------------
7
HHSearch
17.74
11%
-
- C2 -
3B5D
1
EMRE_ECOLI
A:
[31-105]
-------------------------------------------------------------------------------------------------------------------------
W
P
S
V
G
T
I
I
C
Y
C
A
S
-
F
W
L
L
--------
A
Q
T
L
A
Y
I
P
----------
T
G
I
-----------
A
Y
A
I
W
S
G
V
G
-----
I
V
L
I
S
L
L
S
W
G
--------------
F
F
G
Q
R
L
D
L
P
A
I
-
I
G
M
M
L
---
I
C
A
G
V
L
I
I
N
L
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
12.38
23%
0
- C- -
2AXT
-
PSBT_THEEB
T:
[1-1]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
I
T
Y
V
F
I
F
A
C
I
I
A
L
F
F
F
--------
A
I
F
F
R
E
P
P
R
I
T
------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
2.78
21%
-
- C2 -
2MKV
-
ATNG_HUMAN
A:
[30-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
A
G
L
A
--
F
I
--------------
V
G
L
L
I
L
L
---------------------
S
R
R
F
-----------------------------