@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05170: (2016-06-08 )
MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLTLAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQLTIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVAPSGLISASTNFSEGRTEENGELDHYIGAATTKRCPDNFSRLEVPASTWAVFESIGPFPDTLQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDVTSPSFKSEIWIPITKK
Atome Classification :
(20 SA)
.........10.......-.20.........30........40........50........60.......--.70........80........90........100.......110.......120.......130.......140.......150....-----...160.-......-170.......180.......190.....--..200.......210--....--...220.......230......----.240.......250.......260......-.270..-.....280.......290--
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
D
L
L
K
S
M
N
R
A
L
K
Y
I
E
E
NL-TN-DI
D
F
Q
E
A
A
K
L
A
F
C
S
E
Y
H
F
K
R
M
F
S
F
L
AGI
S
L
S
E
Y
I
R
RR
R
L
T
L
A
A
F
E
LKD--S
N
V
K
V
I
D
I
A
I
K
YGYN
S
P
D
S
F
A
R
A
F
Q
N
LHGINP
S
K
ARFNGHS
L
K
AY
P
R
M
T
F
Q
L
T
I
KGGNEM
N
Y
R
IEEK
E
A
F
R
I
V
GIKKRV
P
I
I
F
KGI
N
P
-----
E
I
A
S
M
W
E
-
S
L
D
E
K
A
-
I
N
K
L
K
E
L
S
NVAPSG
L
I
SASTNFSEGRTE--ENGELD
H
Y
IGAATTK--RCPD--NFSRLEVP
A
S
T
W
A
V
F
E
SIGPF
P
----
D
T
L
Q
E
V
W
G
R
I
Y
S
E
WFPSSNYEQIEGP
E
I
L
W-NEHKDV-TSPSFKS
E
I
W
I
PITKK----
22
HHSearch
81.62
20%
-76
- C1 -
1D5Y
2
ROB_ECOLI
A:
[2-288]
---
A
G
I
I
R
D
L
L
I
W
L
E
G
H
L
-
D
Q
-
P
L
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L
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V
A
A
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A
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Y
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K
W
H
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M
F
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V
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G
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A
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A
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I
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A
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R
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S
K
S
A
V
A
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R
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--
T
A
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P
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L
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Y
R
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A
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A
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A
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S
A
F
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I
R
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P
L
R
L
--
G
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M
P
E
H
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T
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-
I
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-
D
F
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A
---
P
T
------
I
P
P
V
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--
E
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KD
D
E
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E
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A
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AD
G
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--
T
G
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P
V
M
L
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G
E
Y
V
M
F
T
Y
E
G
L
G
-----
T
G
V
Q
E
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I
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G
T
C
M
P
M
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N
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G
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D
I
E
R
-
Y
Y
P
A
E
D
D
R
P
I
N
L
R
C
E
L
L
I
P
I
R
R
K
----
42
Fugue
80.56
19%
-71
- C1 -
1D5Y
2
ROB_ECOLI
A:
[1-292]
--
Q
A
G
I
I
R
D
L
L
I
W
L
E
G
H
L
-
D
Q
-
P
L
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A
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V
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A
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G
A
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I
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A
R
R
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S
A
V
A
L
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L
--
T
A
R
P
I
L
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I
A
L
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Y
R
F
D
S
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Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
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P
E
--
W
S
A
F
G
I
R
P
P
L
R
L
G
E
F
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M
P
E
H
K
F
V
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E
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P
L
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G
V
T
Q
S
Y
S
C
S
L
E
Q
I
S
D
-----
F
R
H
E
M
R
Y
-
Q
F
W
H
D
F
-
L
G
N
A
P
T
----
I
P
P
V
L
Y
G
L
N
E
T
R
P
S
Q
D
K
D
--
D
E
Q
E
V
F
Y
T
T
A
L
A
Q
D
Q
AD
G
Y
V
L
--
T
G
H
P
V
M
L
Q
G
G
E
Y
V
M
F
T
Y
E
G
L
-
G
----
T
G
V
Q
E
F
I
L
T
V
Y
G
T
C
M
P
M
L
N
L
T
R
R
K
G
Q
D
I
E
R
Y
Y
P
A
E
D
D
-
R
P
I
N
L
R
C
E
L
L
I
P
I
R
R
K
L
A
A
A
37
HHSearch
64.25
18%
-156
- C- -
3MKL
-
?
A:
[141-243]
---
P
N
M
R
T
R
V
C
T
V
I
N
N
N
I
-
A
H
-
E
W
T
L
A
R
I
A
S
E
L
L
M
S
P
S
L
L
K
K
K
L
R
E
E
-
E
T
S
Y
S
Q
L
L
T
E
C
R
M
Q
R
A
L
Q
L
I
V
I
--
H
G
F
S
I
K
R
V
A
V
S
C
G
Y
H
S
V
S
Y
F
I
Y
V
F
R
N
Y
Y
G
M
T
P
T
E
Y
Q
E
R
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
62.79
18%
-140
- C1 -
4FE7
-
XYLR_ECOLI
A:
[304-409]
---
D
P
A
V
I
Q
A
M
H
Y
I
R
N
H
A
-
C
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
62.23
20%
-94
- C1 -
3LUR
6
?
A:
[4-156]
-------------------------------------------------------------------------------------------------------------------------------------
Y
Q
L
Q
Q
L
A
S
L
T
L
V
G
I
K
E
T
Y
E
N
-
G
R
Q
A
Q
Q
-----
H
I
A
G
F
W
Q
R
C
Y
Q
E
G
V
-
I
A
D
L
Q
L
K
N
N
G
D
L
A
G
I
L
G
L
C
I
P
E
L
D
G
K
M
S
---------
Y
M
I
A
V
T
G
D
--
N
S
A
D
IA
K
Y
D
V
I
T
L
A
S
S
K
Y
M
V
F
E
A
Q
G
A
V
P
----
K
A
V
Q
Q
K
M
E
E
V
H
H
Y
I
H
Q
Y
Q
A
N
T
V
K
S
A
P
F
F
E
L
-
Y
Q
D
G
D
T
-
T
S
E
K
Y
I
T
E
I
W
M
P
V
-------
33
HHSearch
61.62
22%
-130
- C1 -
2K9S
-
A:
[3-105]
----
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
-
A
D
S
N
F
D
I
A
S
V
A
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H
V
C
L
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P
S
R
L
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H
L
F
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Q
L
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I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
K
L
L
L
S
T
--
T
R
M
P
I
A
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
61.45
22%
-100
- C1 -
3LUR
6
?
A:
[2-158]
-----------------------------------------------------------------------------------------------------------------------------------
M
E
Y
Q
L
Q
Q
L
A
S
L
T
L
V
G
I
K
E
T
Y
E
N
G
R
Q
-
A
Q
Q
-----
H
I
A
G
F
W
Q
-
R
C
Y
Q
E
G
V
I
A
D
L
Q
L
K
N
N
G
D
L
A
G
I
L
G
L
C
--
I
P
----
E
--
L
D
G
K
M
S
Y
M
I
A
V
T
G
D
N
S
-
A
D
I
A
--
K
Y
D
V
I
T
L
A
S
S
K
Y
M
V
F
E
A
Q
G
A
V
P
K
A
V
Q
Q
K
M
E
E
V
H
H
Y
I
H
-
Q
Y
Q
A
---
N
T
V
K
S
A
P
F
F
E
L
-
Y
Q
D
G
D
T
-
T
S
E
K
Y
I
T
E
I
W
M
P
V
K
G
-----
32
HHSearch
61.23
21%
-116
- C1 -
3OIO
2
?
A:
[6-109]
---
Q
P
K
L
T
E
A
V
S
L
M
E
A
N
I
-
E
E
-
P
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
Q
Q
--
T
S
K
S
I
V
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
60.60
22%
-131
- C1 -
3OIO
2
?
A:
[9-106]
------
L
T
E
A
V
S
L
M
E
A
N
I
-
E
E
-
P
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
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E
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L
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K
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Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
Q
Q
--
T
S
K
S
I
V
Q
I
G
L
A
C
G
F
S
S
G
P
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F
S
S
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Y
R
N
H
F
N
I
T
P
R
E
E
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
60.22
31%
-82
- C1 -
1BL0
2
MARA_ECOLI
A:
[10-116]
---
A
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
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G
Y
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W
H
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L
G
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Y
I
R
S
R
K
M
T
E
I
A
Q
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K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
G
F
E
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Q
T
L
T
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K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
59.56
24%
-124
- C1 -
3MN2
2
?
A:
[2-106]
----
N
A
V
R
Q
V
E
E
Y
I
E
A
N
W
-
M
R
-
P
I
T
I
E
K
L
T
A
L
T
G
I
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S
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G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
N
L
L
S
D
GA
T
P
T
T
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
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Y
R
D
M
F
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S
E
T
L
Q
R
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
59.42
23%
-114
* C1 *
3W6V
2
?
A:
[37-140]
---
S
D
P
L
A
E
V
V
A
W
A
L
E
H
L
-
H
E
-
Q
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
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G
S
A
P
L
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W
L
I
T
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L
Q
A
Q
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L
L
E
T
--
S
D
Y
S
V
D
E
V
A
G
R
C
G
F
R
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P
V
A
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F
R
R
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L
G
S
S
P
A
A
Y
R
A
A
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
59.21
22%
-114
- C1 -
3OOU
1
?
A:
[4-106]
---
S
P
I
I
Q
N
V
L
S
Y
I
T
E
H
F
-
S
E
-
G
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
L
Q
--
T
K
D
N
L
T
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
59.17
33%
-90
- C1 -
1BL0
2
MARA_ECOLI
A:
[12-111]
-----
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
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M
F
K
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E
T
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H
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L
G
Q
Y
I
R
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R
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M
T
E
I
A
Q
K
L
K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
58.98
23%
-114
- C1 -
3OOU
-
?
A:
[7-104]
------
I
Q
N
V
L
S
Y
I
T
E
H
F
-
S
E
-
G
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
L
Q
--
T
K
D
N
L
T
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
58.46
31%
-98
- C1 -
1D5Y
2
ROB_ECOLI
C:
[9-106]
----------
L
I
W
L
E
G
H
L
-
D
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
58.38
21%
-127
- C1 -
3LSG
1
?
A:
[2-103]
----
N
A
K
E
L
I
Q
N
I
I
E
E
S
Y
T
D
S
-
Q
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
L
L
L
L
T
--
T
E
L
K
N
Y
E
I
A
E
Q
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
57.91
28%
-77
- C1 -
1BL0
2
MARA_ECOLI
A:
[9-124]
--
D
A
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
A
Q
K
L
K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
S
R
F
L
H
P
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
57.82
31%
-111
- C1 -
1D5Y
2
ROB_ECOLI
B:
[9-106]
----------
L
I
W
L
E
G
H
L
-
D
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.37
31%
-102
- C1 -
1D5Y
2
ROB_ECOLI
A:
[9-106]
----------
L
I
W
L
E
G
H
L
-
D
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------