@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05200: (2016-06-08 )
MNHIKWLSDLKKAGLLALGKGVITLLKRFSLVIVTLMMSIVVVLAAAKESPGDHVISFDEPIILMISIGIVVFLLIPPLVMSFFGNLVVRIISGVYQCFIVFTFLGLIPIGFLIPNGFLTILVSIAGTLVSIASVAVTLCIGKNKKDI
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------........-------.10-........--.20.--..-------...---..30....--..-------..40-------.........-----50........60.......----------.70.---------------------.-....-----..80.....-...-90..-..-....100......---.110....--------...120.......130..----.....140......-----------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
H
I
K
W
L
S
-------
D
L
--
K
K
A
G
L
L
A
L
--
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G
V
--
I
T
-------
L
L
K
---
R
F
S
L
V
I
V
T
--
L
M
-------
M
S
I
--------
V
V
V
L
A
AAKE-----SPGD
H
V
I
SFDE
P
I
I
L
M
I
S
I
----------
G
I
V
V
---------------------
F
-
L
LI
P
-----
P
L
V
M
S
F
F
G
N
-
L
V
V
-
R
I
I
S
-
G
V
-
Y
Q
C
F
I
V
F
T
F
L
G
L
I
---
P
I
G
F
LIP
N
--------
G
F
L
T
I
L
V
S
I
A
G
T
L
V
S
I
A
S
----
V
A
V
T
L
C
IGKNKKDI-----------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
77.29
12%
0
- C- -
5ELH
-
UNK_MOUSE
A:
[2-0]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Q
H
Y
T
Y
L
K
-------
E
F
--
R
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E
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F
--
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--
C
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-------
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R
---
P
Y
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F
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W
H
--
F
V
-------
N
Q
R
--------
R
R
R
S
I
R
R
R
D
GTFNY
S
P
D
V
Y
C
T
K
Y
D
E
A
T
----------------
G
L
C
P
---------------------
E
-
G
D
E
C
-----
P
F
L
H
R
T
T
G
D
-
T
E
R
-
R
Y
H
L
-
R
Y
-
Y
K
--
T
G
I
C
I
H
E
T
D
---
S
K
G
N
C
T
K
N
--------
G
---
L
H
C
A
F
A
H
G
P
H
D
L
R
S
----
P
V
Y
D
I
R
E
L
Q
A
M
E
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
72.55
21%
-182
- C5 -
4XNG
-
?
A:
[65-204]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------FH
N
F
S
K
E
T
L
Q
-------
K
Q
--
A
K
R
G
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L
--
E
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--
L
V
-------
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L
Q
---
Q
L
E
L
E
Y
V
N
--
L
L
G
RSFDS
Y
Q
Q
K
--------
T
E
L
L
N
N
L
K
E
-----
L
V
D
E
H
F
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E
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----------
F
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V
I
---------------------
G
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Y
T
-----
P
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L
N
S
F
F
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K
-
L
L
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P
D
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M
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---------
R
E
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---
Q
F
I
I
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--------
R
F
K
K
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S
Q
K
I
D
S
S
L
K
Q
I
E
T
----
E
A
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
63.16
20%
-181
- C4 -
2OST
1
?
A:
[1-148]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
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K
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G
-------
D
I
A
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Q
A
A
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A
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M
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W
G
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--
L
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-------
P
L
G
DRL
S
Y
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D
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EG
I
L
-------
L
K
V
--------
Q
V
K
S
S
W
K
S
E
-----
K
T
G
N
Y
V
V
D
N
R
R
T
R
T
N
R
R
N
I
-------------------------------------
V
R
S
P
-----
Y
R
G
N
D
F
--
D
-
F
A
V
-
A
Y
V
E
-
E
L
--
E
L
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Y
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F
P
V
D
V
F
I
---
S
Y
G
S
E
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H
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--------
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E
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D
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P
R
S
F
G
Y
R
E
A
----
W
H
L
I
L
Q
K
G
A
A
Q
K
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
58.88
14%
-148
- C4 -
1L1D
1
MSRAB_NEIGO
A:
[8-151]
------------------------------------------------------------------------------------------------------------------------------------------------------------------YKK
P
S
D
A
E
L
K
R
-------
T
L
--
T
E
E
Q
Y
Q
V
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--
Q
N
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A
--
T
E
YAFSHEY
D
H
L
---
F
K
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G
I
Y
V
D
--
V
V
-------
S
G
E
--------
P
L
F
S
S
A
D
K
Y
-----
D
S
G
C
G
W
P
S
F
T
R
P
I
D
---------------
A
K
S
V
---------------------
T
-
E
H
D
D
-----
F
S
-----
F
N
M
R
R
T
-
E
V
R
S
-
R
A
-
A
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S
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L
G
H
V
F
-------
P
D
G
P
R
D
K
G
--------
G
L
R
Y
C
I
N
G
A
S
L
K
F
I
P
L
E
Q
M---
D
A
A
G
Y
--
G
A
L
K
G
E
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
54.21
13%
-193
* C4 *
2KCD
-
?
A:
[1-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
L
E
L
Q
L
K
-------
H
Y
--
I
T
N
L
F
N
L
P
--
R
D
---------------
E
---
K
W
E
C
E
S
I
E
--
E
V
-------
A
D
D
--------
I
L
P
D
Q
Y
V
R
L
-----
G
P
L
S
N
------------------------------------------------------
K
-----
I
L
Q
T
N
T
Y
Y
S
-
D
T
L
-
H
K
S
N
----
I
Y
P
F
I
L
Y
Y
Q
K
Q
L
I
---
A
I
G
F
I
D
E
N
--------
H
D
M
D
F
L
Y
L
-
H
N
T
V
M
P
L
L
D
----
Q
R
Y
L
L
T
G
G
Q
L
E
H
H
H
HHH--------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
51.91
13%
-210
- C4 -
2NN6
-
EXOS5_HUMAN
D:
[25-234]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
S
L
R
H
F
A
-------
C
E
--
Q
--
N
L
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S
R
--
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G
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--
A
S
-------
F
L
Q
---
G
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T
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V
L
A
G
--
V
Y
-------
G
P
A
EVKNK
A
T
L
E
V
I
L
R
P
K
I
G
-----
L
P
G
V
A
E
K
S
R
E
R
L
I
R
N
T
C
E
A
VVLGTLHPR
T
S
I
T
V
---------------------
V
-
L
Q
V
V
SDAGS
L
L
A
C
C
L
N
A
A
-
C
M
A
-
L
V
D
A
-
G
V
P
M
R
A
L
F
C
G
V
A
C
A
L
D
---
S
D
G
T
L
V
L
D
PT
S
K
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E
K
E
A
R
A
V
L
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F
A
L
D
S
V
E
R
K
L
L
M
----
S
S
T
K
G
L
Y
S
D
T
E
L
Q
Q
C
L
A
A
A
Q
A
A
S
Q
H
V
F
R
F
Y
R
E
S
L
Q
R
R
Y
SK---------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.28
28%
-182
- C6 -
4FN0
-
PVRL2_MOUSE
A:
[153-217]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
T
W
I
S
SLG
G
E
A
K
D
T
--
Q
E
P
G
I
Q
A
-----
G
T
--
V
T
-------
I
I
S
---
R
Y
S
L
V
P
V
G
--
R
A
-------
D
G
V
--------
K
V
T
C
R
V
E
H
E
-----
S
-------
F
E
E
P
I
L
L
P
V
T
L
----------
S
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.20
28%
-184
- C6 -
4FS0
-
PVRL2_MOUSE
A:
[153-217]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
T
W
I
S
SLG
G
E
A
K
D
T
--
Q
E
P
G
I
Q
A
-----
G
T
--
V
T
-------
I
I
S
---
R
Y
S
L
V
P
V
G
--
R
A
-------
D
G
V
--------
K
V
T
C
R
V
E
H
E
-----
S
-------
F
E
E
P
I
L
L
P
V
T
L
----------
S
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.04
28%
-173
* C6 *
4FMK
1
PVRL2_MOUSE
A:
[153-217]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
T
W
I
S
S
L
G
G
E
A
K
D
T
--
Q
E
P
G
I
Q
A
-----
G
T
--
V
T
-------
I
I
S
---
R
Y
S
L
V
P
V
G
--
R
A
-------
D
G
V
--------
K
V
T
C
R
V
E
H
E
-----
S
-------
F
E
E
P
I
L
L
P
V
T
L
----------
S
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
44.84
11%
-226
- C- -
1OGH
-
DCD_METJA
A:
[1-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
S
-------
D
K
--
D
I
I
D
Y
V
T
S
--
K
R
I
I
--
I
K
-------
P
F
N
---
K
D
F
V
G
P
C
S
--
Y
D
-------
V
T
L
--------
G
D
E
F
I
I
Y
D
D
-----
E
V
Y
D
L
S
K
E
L
N
Y
K
R
I
K
I
K
N
S
----------
I
L
V
C
P
L
NYNLT
E
E
K
I
N
Y
F
K
E
K
Y
NVD
Y
-
V
V
E
G
-----
G
V
L
G
T
T
N
E
Y
-
I
E
L
P
N
D
I
S
-
A
Q
-
Y
Q
G
R
S
S
L
G
R
V
F
L
T
SHQ
T
A
G
W
I
D
A
G
F
K
------
G
K
I
T
L
E
I
V
A
F
D
K
P
V
I
L
Y
K
NQRI
G
Q
L
I
F
S
K
L
L
S
P
A
D
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
42.04
15%
-243
- C5 -
4X5M
6
SWEET_ECOU3
A:
[15-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
---------------------
F
-
A
F
A
P
-----
Q
-
S
I
K
T
I
R
T
-
R
N
T
-
E
G
I
S
-
V
V
-
M
Y
I
M
F
L
T
G
V
I
S
W
I
---
A
Y
G
I
M
R
S
D
--------
F
A
V
-
L
I
A
N
I
V
T
L
F
L
A
A
P
V
----
L
V
I
T
L
I
N
R
R
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
41.22
13%
-191
- C5 -
2EUA
1
MENF_ECOLI
A:
[2-429]
Q
S
L
T
T
A
L
E
N
L
L
R
H
L
S
QEIPA
T
P
G
I
R
V
I
D
I
P
F
P
LKDAFD
A
L
S
W
L
A
S
QQTYP
Q
F
Y
W
Q
Q
RNGD
E
E
A
V
V
L
G
AITRFTS
L
D
Q
A
Q
R
F
L
R
Q
H
PEHADL
R
I
W
G
L
N
A
FDPS
Q
G
N
L
L
LPR
L
E
W
R
R
C
GG
K
A
T
L
R
L
T
L
F
S
ESS
L
Q
H
D
A
I
Q
A
K
E
F
I
A
T
LVSI
K
P
L
P
G
L
HLTTT
R
E
Q
H
W
P
D
K
T
G
W
T
Q
-------
L
I
--
E
L
A
T
K
T
I
A
--
E
G
E
L
D
K
V
V
-------
L
A
R
---
A
T
D
L
H
F
A
S
--
P
V
-------
N
A
A
--------
A
M
M
A
A
S
R
R
L
-----
N
L
N
--------
C
Y
H
F
Y
M
A
F
----------
D
G
E
-------------------------------------------------------------
N
A
F
L
G
S
S
---
P
------------------
E
R
L
W
R
R
R
D
K
A
L
R
T
E
A
----
L
A
G
T
V
A
N
N
P
D
D
K
Q
A
Q
Q
L
G
E
W
L
M
A
D
D
K
N
Q
R
E
N
M
L
V
V
E
D
I
C
Q
R
L
QADT
Q
T
L
D
V
L
P
P
Q
V
L
R
L
RK
V
Q
H
L
R
R
C
I
W
T
S
L
NKAD
D
V
I
C
L
H
Q
L
QPTAAVAGLP
R
D
L
A
R
Q
F
I
A
R
HEPFTREWYA
G
S
A
G
Y
L
S
LQ
Q
S
E
F
C
VSLR
S
A
K
I
S
GN
V
V
R
L
Y
A
G
A
G
I
V
RGSD
P
E
Q
E
W
Q
E
I
D
N
K
A
A
G
L
R
T
L
L
Q
8
HHSearch
34.12
13%
-51
- C5 -
3ZNU
1
?
A:
[26-40]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
K
A
R
S
R
-------
T
L
--
Q
E
Q
G
Q
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
34.00
19%
-80
- C5 -
1S7I
-
?
A:
[34-54]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
M
T
Y
S
D
-------
Q
L
--
G
K
A
G
H
Y
I
A
--
S
H
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
30.83
33%
-121
- C6 -
4J7G
2
?
A:
[305-337]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
A
V
A
V
K
-----
G
S
----
I
S
W
T
Q
P
L
V
E
S
V
D
L
----------
G
V
V
A
---------------------
F
-
L
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
27.68
50%
-
- C1 -
3RO3
-
B:
[12-19]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
M
E
-------
D
L
--
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
26.22
20%
-62
- C6 -
4BJU
1
?
A:
[60-89]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
W
I
--------
G
V
M
V
T
A
S
H
N
-----
P
A
E
D
N
G
V
K
L
V
D
P
M
G
E
M
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
26.00
20%
-15
- C5 -
1MWQ
6
Y828_HAEIN
A:
[26-45]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
L
A
R
L
K
-------
Q
L
--
Q
A
E
N
R
L
L
T
--
A
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
21.40
17%
34
- C5 -
4CXF
1
CNRY_CUPMC
B:
[2-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
V
E
E
W
L
T
-------
H
A
--
R
K
V
T
Q
E
A
S
--
I
G
V
D
--
V
T
-------
S
I
Q
---
E
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
19.66
30%
96
* C5 *
2M3F
-
A:
[1-22]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------T
D
E
D
V
K
K
W
R
E
-------
E
R
--
K
K
M
W
L
L
K
I
--
S
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------