@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05320: (2016-06-08 )
MQSKRGRPRDEGTHKAILSAAYDLLLEKGFDAVTVDKIAERAKVSKATIYKWWSNKAAVIMDSFLSTATDRLPVPDTGSSVQDIVTHATNLARFLTSREGTVIKELIGAGQLDEKLAEEYRTRFFQPRRLQAKGLLEKGIQKGELRENLDIEVSIDLIYGPIFYRLLITGDEVNDSYVRDLVMNAFKGVQATSATESM
Atome Classification :
(20 SA)
.........10.----.......20........30...-.-....40........50........60-........70.----.----.-.--....80........90.....-.-.-.100...-....110-.......120.......130.......140.......150.......160..---.----.---...-----170---.---.-.-......180.......190......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MQSKRGRPRDEG----
T
H
K
A
I
L
S
A
A
Y
D
L
L
L
E
KGFDA
V
T
-
V
-
D
K
I
A
E
R
AKVSK
A
T
I
Y
K
WWSN
K
A
A
V
I
M
-
D
S
F
L
S
T
ATDRL----P----V-P--DTG
S
S
V
Q
D
I
V
T
H
A
T
N
L
A
R
F
L
T
-S-R-E
G
T
V
I
K
E
-
L
IGA
G
Q
L
-
D
E
K
L
A
E
E
Y
R
T
RFFQPRR
L
Q
A
K
G
L
L
E
KGIQKGELRENL
D
I
E
V
S
I
D
L
I
Y
G
P
I
F
Y
---
R
----
L
---
L
I
T-----G-----D---E-V-
N
D
S
Y
V
R
D
L
V
M
N
A
FKGVQATSATESM
124
HHSearch
74.81
76%
-135
- C1 -
2FQ4
-
?
A:
[9-190]
--------
R
N
I
E
----
T
Q
K
A
I
L
S
A
S
Y
E
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L
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E
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G
F
K
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-
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-
D
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A
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W
W
P
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K
A
A
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M
-
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A
A
A
A
R
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----
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----
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-
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--
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---
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----
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-----
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-----
E
---
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-
L
D
D
-
S
Y
V
H
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I
N
A
F
E
G
I
R
--------
1
PsiBlast_PDB
72.61
75%
-131
- C1 -
2FQ4
-
?
A:
[9-190]
--------
R
N
I
E
----
T
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-
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A
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----
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----
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---
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----
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---
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-----
G
-----
E
---
K
-
L
-
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D
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Y
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V
I
N
A
F
E
G
I
R
--------
115
Fugue
71.05
74%
-125
- C1 -
2FQ4
-
?
A:
[9-192]
--------
R
N
I
E
----
T
Q
K
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A
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-
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M
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A
A
R
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----
P
----
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-
P
--
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---
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----
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---
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T
-----
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-----
E
---
K
-
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-
D
D
S
Y
V
H
D
L
V
I
N
A
F
E
G
I
R
L
R
------
123
HHSearch
57.77
34%
-163
- C1 -
2ZB9
-
?
A:
[17-204]
-----
G
R
R
P
A
E
E
----
V
R
A
E
V
L
H
A
V
G
E
L
L
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-
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-
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P
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K
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A
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A
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-
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Y
F
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A
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E
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----
A
----
F
-
P
--
D
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G
D
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A
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A
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-
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P
-
G
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-
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A
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-
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A
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A
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R
R
A
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E
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P
D
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D
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V
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D
Q
L
W
G
A
V
Y
H
---
R
----
L
---
L
I
P
-----
D
-----
E
---
P
-
V
D
D
-
A
F
V
T
A
L
V
T
N
L
L
D
G
V
C
P
R
------
2
PsiBlast_PDB
57.07
34%
-159
- C1 -
2ZB9
-
?
A:
[17-204]
-----
G
R
R
P
A
E
E
----
V
R
A
E
V
L
H
A
V
G
E
L
L
L
T
E
G
T
A
Q
L
T
-
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-
E
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V
S
K
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T
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P
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G
A
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A
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-
D
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D
T
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----
A
----
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-
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--
D
T
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D
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R
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-
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-
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A
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R
R
A
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A
A
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L
V
D
Q
L
W
G
A
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Y
H
---
R
----
L
---
L
I
P
-----
D
-----
E
---
P
-
V
-
D
D
A
F
V
T
A
L
V
T
N
L
L
D
G
V
C
P
R
------
114
Fugue
54.81
34%
-163
- C1 -
2ZB9
-
?
B:
[22-203]
----------
E
E
----
V
R
A
E
V
L
H
A
V
G
E
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L
L
T
E
G
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-
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E
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A
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-
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----
A
----
F
-
P
--
D
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D
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A
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L
A
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A
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-
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A
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Y
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---
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----
L
---
L
I
P
-----
D
-----
E
---
P
-
V
-
D
D
A
F
V
T
A
L
V
T
N
L
L
D
G
V
C
P
-------
125
HHSearch
44.50
31%
-116
- C1 -
2ID3
7
?
A:
[35-222]
------
G
G
R
T
A
R
----
I
R
E
A
V
L
L
A
A
G
D
A
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A
A
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F
D
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-
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Y
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G
G
L
A
A
-
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M
A
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----
P
----
R
-
A
--
D
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A
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L
Y
Y
---
A
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L
---
L
N
T
-----
G
-----
R
S
L
T
E
A
D
A
D
-
R
A
A
R
A
A
S
T
A
A
R
A
G
V
W
--------
134
HHSearch
43.47
26%
-136
- C1 -
4JKZ
-
?
A:
[11-188]
---------
S
E
K
----
S
R
V
A
I
V
E
A
T
R
A
L
L
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E
R
G
F
D
G
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-
I
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A
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A
-
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K
I
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A
---
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M
-
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--
K
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D
V
T
A
D
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A
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A
A
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L
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-----
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S
-
Y
S
R
-
Q
R
A
E
T
S
A
R
I
I
V
A
G
L
R
--------
128
HHSearch
41.28
19%
-158
- C1 -
3CWR
4
?
A:
[14-203]
--------
P
D
A
V
----
V
R
E
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I
V
G
A
A
Q
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L
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W
I
A
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I
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P---
G
----
F
E
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--
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Q
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A
A
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---
T
L
G
-----
L
RE---
P
LP-
A
W
D
I
A
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P
R
V
A
D
A
V
R
L
I
A
------------
120
Fugue
39.50
19%
-156
- C1 -
3CWR
4
?
A:
[11-203]
-----
P
A
V
P
D
A
V
----
V
R
E
S
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A
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GF--
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GLR
E
---
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-
L
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P
A
W
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V
A
D
A
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--------
97
PsiBlast_CBE
37.29
31%
-256
- C1 -
3G7R
7
?
B:
[40-84]
--------------------
L
L
G
T
A
T
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L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
137
HHSearch
37.10
15%
-158
- C1 -
3DEW
6
?
A:
[8-199]
-----------
D
----
C
R
S
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E
L
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A
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G
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R
E
L
A
Q
A
A
G
A
S
I
S
M
I
S
Y
H
F
G
G
K
E
G
L
Y
A
-
A
V
L
Q
E
Q
F
A
C
F
G
QL
D
-
D
----
I
R
G
--
Q
A
G
D
P
L
A
V
M
T
A
Y
L
R
W
T
I
Q
R
H
R
-
N
---
N
P
Q
L
L
R
F
-
Y
T
S
E
L
T
N
P
T
P
C
F
A
A
-
I
V
S
P
A
I
A
S
V
I
R
L
L
A
E
S
I
E
A
G
M
T
R
G
L
F
R
R
D
L
H
A
V
N
S
A
L
A
L
A
G
M
V
N
Y
---
F
----
F
L
S
T
L
A
T
EGLTS
H
-----
S
P--
D
-
Q
D
E
-
E
L
I
R
Q
Y
V
A
I
F
T
R
G
I
M
A
-------
63
PsiBlast_CBE
36.43
42%
-218
- C1 -
4JYK
2
RUTR_ECOLI
B:
[21-65]
------------------
K
A
I
L
S
A
A
L
D
T
F
S
Q
F
G
F
H
G
T
R
-
L
-
E
Q
I
A
E
L
A
G
V
S
K
T
N
L
L
Y
Y
F
P
S
K
E
A
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
140
HHSearch
36.23
12%
-153
- C1 -
2QTQ
9
?
A:
[10-171]
-----
D
N
L
E
T
P
G
----
A
R
D
L
L
L
Q
T
A
S
N
I
M
R
E
G
D
V
V
D
I
S
-
L
-
S
E
L
S
L
R
S
G
L
N
S
A
L
V
K
Y
Y
F
G
N
K
A
G
L
L
K
-
A
L
L
D
R
D
M
E
N
I
V
K
S
V
D
A
----
L
L
A
K-
D
D
M
S
P
E
A
K
L
R
R
H
I
S
K
C
I
D
T
Y
Y
-
D
Y
P
Y
L
N
R
L
L
M
R
-
L
V
R
D
-
S
D
-
E
A
E
A
K
R
-
I
A
D
Q
Y
L
L
P
L
H
R
A
Y
N
R
F
I
G
E
G
V
K
A
G
V
F
R
P
-
I
N
P
Q
L
F
Y
F
T
V
T
G
A
A
-------------------------------------------------------------
98
PsiBlast_CBE
35.76
31%
-251
- C1 -
3G7R
4
?
A:
[40-84]
--------------------
L
L
G
T
A
T
R
I
F
Y
A
E
G
I
H
S
V
G
-
I
-
D
R
I
T
A
E
A
Q
V
T
R
A
T
L
Y
R
H
F
S
G
K
D
D
L
I
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
126
HHSearch
35.35
21%
-143
- C1 -
3C2B
2
?
A:
[14-211]
----------
S
P
----
R
Q
N
A
V
L
D
Q
A
L
R
L
L
V
E
G
G
E
K
A
L
T
-
T
-
S
G
L
A
R
A
A
N
C
S
K
E
S
L
Y
K
W
F
G
D
R
D
G
L
L
A
-
A
M
I
T
F
Q
Q
S
K
V
R
T
F
E
-
K
A---
G
-
D
RV
S
A
P
Q
L
A
D
H
L
E
V
F
A
H
D
L
L
D
V
L
A
-
G
D
V
-
S
L
A
L
N
R
L
-
A
I
G
Q
A
S
R
---
K
L
G
D
L
L
L
E
R
G
R
R
Q
I
D
R
R
A
R
G
L
I
E
A
G
R
R
S
G
Y
L
R
F
D
-
D
A
E
E
A
Y
R
S
F
Y
G
L
I
V
S
---
D
L
H
V
R
M
---
L
L
G
-----
E
-----
A
P
D
-
K
-
D
F
S
-
A
R
A
K
K
A
V
V
A
F
L
T
L
Y
G
T
E
K
V
H
---
138
HHSearch
34.98
18%
-146
- C1 -
1VI0
1
FADR_BACSU
A:
[8-196]
-----------
P
----
K
Y
M
Q
I
I
D
A
A
V
E
V
I
A
E
N
G
Y
H
Q
S
Q
-
V
-
S
K
I
A
K
Q
A
G
V
A
D
G
T
I
Y
L
Y
F
K
N
K
E
D
I
L
I
-
S
L
F
K
E
K
M
G
Q
F
I
E
---
R
M
E
E
D
I
-
K
--
E
K
A
T
A
K
E
K
L
A
L
V
I
S
K
H
F
S
L
L
A
G
D
-
H
-
N
L
A
I
V
T
--
Q
L
E
L
R
Q
S
-
N
L
E
L
R
Q
K
I
-
N
E
I
L
K
G
Y
L
N
I
L
D
G
I
L
T
E
G
I
Q
S
G
E
I
K
E
G
L
D
V
R
L
A
R
Q
M
I
F
G
T
I
D
E
T
V
T
T
----
W
---
V
M
N
-----
D
-----
Q
K--
Y
-
D
L
V
-
A
L
S
N
S
V
L
E
L
L
V
S
G
I
H
N
K
------
38
PsiBlast_CBE
34.12
31%
-194
- C1 -
4DW6
2
ETHR_MYCTU
A:
[44-96]
-----------
D
----
R
E
L
A
I
L
A
T
A
E
N
L
L
E
D
R
P
L
A
D
I
S
-
V
-
D
D
L
A
K
G
A
G
I
S
R
P
T
F
Y
F
Y
F
P
S
K
E
A
V
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
95
PsiBlast_CBE
34.08
32%
-199
- C1 -
4B3A
1
TETR4_ECOLX
A:
[6-59]
------------------
E
S
V
I
D
A
A
L
E
L
L
N
E
T
G
I
D
G
L
T
-
T
-
R
K
L
A
Q
K
L
G
I
E
Q
P
T
L
Y
W
H
V
K
N
K
R
A
L
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
33.66
36%
-167
- C- -
3BRU
-
ACUR_RHOS4
A:
[24-72]
------------DASL
A
H
Q
S
L
I
R
A
G
L
E
H
L
T
E
K
G
Y
S
S
V
G
-
V
-
D
E
I
L
K
A
A
R
V
P
K
G
S
F
Y
H
Y
F
R
N
K
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------