@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05408: (2016-06-08 )
MNMYWFLGALLYFLIGTYIFIRVTRDSQSGSWILLALAAPLIIAGYPYFYSKKLLSKRR
Atome Classification :
(18 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..----.-----------...---------------.--------------.-------.10-----.......--.20.--------------..-...-----------..30......---..40--.....--...50........-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
----
M
-----------
Y
W
F
---------------
L
--------------
G
-------
A
L
L
-----
Y
F
L
I
G
T
Y
--
I
F
I
R
--------------
V
T
-RDS-----------QSG
S
W
I
L
L
AL---A
A
P
L
--
I
IAG
Y
--
P
Y
F
Y
S
K
K
L
L
SKRR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
69.68
23%
-121
- C4 -
2JVE
-
?
A:
[18-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
----
L
-----------
K
C
F
---------------
T
R
NGDDRTV
T
T
C
A
EE
Q
-------
T
R
C
-----
L
F
V
Q
L
P
Y
--
S
E
I
Q
--------------
E
C
-
K
T
V
-----------
Q
Q
C
A
E
V
L
E
E
V
---
T
A
I
------
G
Y
--
P
A
K
C
C
C
E
D
L
C
N
R
S
EQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
63.44
24%
-137
- C4 -
1H2S
-
HTR2_NATPH
B:
[1-60]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
----
V
-----------
F
I
F
---------------
V
--------------
G
-------
A
L
T
------
V
L
F
G
A
I
--
A
Y
G
E
--------------
V
T
-
A
A
A
-----------
A
T
G
D
A
A
A
V
Q
E
---
A
A
V
S
--
A
I
L
G
L
--
I
I
L
L
G
I
N
L
G
L
V
A
A
T
L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
62.93
22%
-169
- C4 -
5FLZ
-
SPC98_YEAST
B:
[180-846]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
E
E
D
I
L
K
Y
V
S
Y
T
L
L
ATTSALFPFDHEQIQIPSKIP
N
F
E
S
G
L
L
H
L
I
F
E
A
G
L
L
Y
Q
S
L
G
Y
K
V
E
K
F
R
MLNIS
P
M
K
K
A
L
I
I
E
I
S
E
E
L
Q
N
Y
T
A
F
V
N
N
L
V
S
SGTVVS
L
K
S
L
Y
R
E
I
Y
E
N
I
I
R
L
R
I
Y
C
R
F
T
E
H
L
E
ELSG
D
T
F
L
I
E
L
N
I
F
K
S
HGD
L
T
I
R
K
I
A
T
N
L
F
N
S
M
I
S
L
Y
Y
E
Y
L
----
M
-----------
N
W
L
---------------
T
--------------
K
-------
G
L
L
RATYG
E
F
F
I
A
E
N
--
Y
H
I
P
--------------
I
E
F
N
Q
E
-----------
R
V
P
A
F
I
P
K
E
L
---
A
Y
K
I
--
F
M
I
G
K
--
S
Y
I
F
L
E
K
Y
C
K
E
V
Q
W
T
N
E
F
S
K
K
Y
H
V
L
Y
Q
S
N
SYRGI
S
T
N
F
F
E
I
I
N
D
Q
Y
S
E
I
V
N
H
T
N
Q
I
L
N
QKFH
Y
R
D
V
V
F
A
L
K
N
I
LLMGK
S
D
F
M
D
A
L
I
E
K
A
N
D
I
L
A
T
PSD
S
L
P
N
Y
K
L
T
R
V
L
Q
E
A
V
Q
L
S
SLRHLMNSPRNS
S
V
I
N
G
L
D
A
R
V
L
D
LGHGSVGWDV
F
T
L
D
Y
I
L
YPPLSLVLNVNRP
F
G
R
K
E
Y
L
R
I
F
N
F
L
W
R
F
K
K
N
N
Y
F
Y
Q
K
E
M
L
K
S
N
D
IIRI
N
K
L
S
R
I
S
I
L
R
T
Q
F
Q
Q
F
N
S
K
M
E
S
Y
Y
L
N
C
II
E
E
N
F
K
E
M
T
R
K
L
Q
R
TLN
I
D
E
L
E
S
V
H
N
T
F
L
T
N
I
L
S
H
K
L
F
ATQP
Y
P
T
S
L
V
L
L
L
N
S
V
Y
E
F
V
K
V
Y
C
N
LNS
N
G
L
L
G
K
F
N
T
N
L
K
E
I
V
S
Q
Y
K
N
F
K
D
R
L
Y
I
F
R
A
D
L
K
N
D
GD
E
E
L
F
L
L
S
K
S
L
R
24
Fugue
58.30
19%
-193
- C2 -
3C0F
-
Y1514_ARCFU
B:
[3-87]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I
M
D
----
E
-----------
I
V
N
---------------
L
--------------
Q
KEVSLEE
A
E
R
-----
Y
A
N
I
A
S
Y
GD
G
I
L
L
--------------
S
V
-
H
D
S
TGYRAPEVYCC
G
E
K
P
W
E
V
Y
A
C
NRG
A
N
L
I
--
S
V
N
Q
F
--
E
F
Y
F
R
I
E
V
E
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
52.99
22%
-130
- C4 -
1IW4
-
ITRP_HALRO
A:
[1-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
----
M
DCTEFNPLCRC
N
K
M
---------------
L
--------------
G
-------
D
L
I
-----
C
A
V
I
G
D
------------------------
A
K
E
-----------
E
H
R
N
M
C
A
L
C
C
---
E
H
P
-----
G
G
F
--
E
Y
S
N
G
P
C
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
51.19
23%
-142
- C4 -
1W8X
-
VP16_BPPRD
P:
[1-116]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
KKKL
L
-----------
Y
W
V
---------------
G
--------------
G
-------
G
L
V
-----
L
I
L
I
W
L
W
--
F
R
N
R
PAAQVASNWEGPPY
M
T
-
Y
N
Q
-----------
P
Q
A
G
S
V
T
L
P
V
---
A
D
S
I
TS
Q
L
N
D
Y
--
A
S
S
L
N
D
Y
L
A
S
Q
A
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
50.68
18%
-165
- C4 -
2LV2
2
A:
[1-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
----
H
-----------
H
H
H
HHSH
M
G
D
G
E
G
A
G
V
L
G
L
--------------
S
-------
A
S
A
-----
E
C
H
L
C
P
V
--
C
G
E
S
--------------
F
A
-
S
K
G
-----------
A
Q
E
R
H
L
R
L
L
H
---
A
A
Q
V
--
F
P
C
K
Y
CP
A
T
F
Y
S
S
P
G
L
T
R
H
I
N
KCHPSENR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
41.15
46%
-
- C3 -
2YG2
1
APOM_HUMAN
A:
[27-39]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
G
Q
W
Y
F
I
A
G
---
A
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
34.63
38%
-107
- C4 -
3UKM
-
KCNK1_HUMAN
A:
[17-49]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---------------
L
--------------
G
-------
Y
L
L
-----
Y
L
V
F
G
A
V
--
V
F
S
S
--------------
V
E
-
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
34.38
40%
0
- C- -
1JB0
1
PSAL_THEEB
L:
[55-74]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-----
Y
F
L
I
G
P
W
--
V
K
L
G
--------------
P
L
-
R
D
S
-----------
D
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
33.63
19%
-
- C6 -
2Q5W
1
MOAE_STAAN
E:
[28-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
V
--
V
F
T
G
--------------
H
V
-
R
E
W
-----------
T
K
G
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
32.46
12%
-11
* C4 *
7REQ
2
MUTB_PROFR
A:
[3-559]
LPRFDSVDLGNAPVPAD
A
A
R
R
F
E
E
L
A
A
K
A
GTGEAWETAEQ
I
P
V
G
TLFNEDVYKDMDWLDTYAGIPPFVHGPYATMYAFRPWTI
R
Q
Y
A
G
F
S
T
A
K
E
S
N
A
F
Y
R
R
N
L
A
A
GQK
G
L
S
V
A
F
D
L
P
T
H
R
GYDSDNPRVAGDVGMA
G
V
A
I
D
S
I
Y
D
M
R
E
L
F
AGIPLDQ
M
S
V
S
M
TMNGA
V
L
P
I
L
A
L
Y
V
V
T
A
E
E
Q
GVKPEQ
L
A
G
T
I
QND
I
L
K
E
F
M
VRNTYIYP
P
Q
P
S
M
R
I
I
S
E
I
F
A
Y
T
S
A
NMPKWNSISISG
Y
H
M
Q
E
A
GAT
A
D
I
E
M
A
Y
T
L
A
D
G
V
D
Y
I
R
A
G
E
S
V
GLNVDQFAPR
L
S
F
F
W
G
I
G
MN
F
F
M
E
V
A
K
L
R
A
A
R
M
L
W
A
K
L
V
H
Q
F
GPKNPKSM
S
L
R
T
H
S
Q
T
SGWSLTAQDV
Y
N
N
V
V
R
T
C
I
E
A
M
A
A
T
Q
G
HTQ
S
L
H
T
N
S
LDEAIALPT
D
F
S
----
A
-----------
R
I
A
---------------
R
--------------
N
-------
T
Q
L
-----
F
L
Q
Q
E
S
G
--
T
--
T
--------------
R
V
-
I
D
P
-----------
W
S
G
S
A
Y
V
E
E
L
---
T
W
D
L
--
A
R
K
A
W
--
G
H
I
Q
E
V
E
K
V
G
G
M
A
K
A
I
E
K
G
I
P
K
M
R
I
E
E
A
A
A
R
T
Q
A
R
I
D
S
GR
Q
P
L
I
GVNKYRLEHE
P
P
L
D
V
L
K
V
D
N
S
T
V
L
A
E
Q
K
A
K
L
V
K
L
R
A
E
RD
P
E
K
V
K
A
A
L
D
K
I
T
W
A
A
G
N
PDDKDPDRN
L
L
K
L
C
I
D
A
G
R
A
MAT
V
G
E
M
S
D
A
L
E
K
V
F
G
R
Y
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
30.92
25%
-
- C6 -
4AP8
-
MOC2B_HUMAN
A:
[33-48]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
--
L
F
V
G
--------------
T
T
-
R
N
N
-----------
F
E
G
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
27.70
14%
-244
- C4 -
4PHZ
2
?
K:
[145-194]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
I
I
E
F
Y
M
---
S
Y
P
I
Y-
S
V
I
A
V
--
G
A
F
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
20.57
15%
-
* C6 *
3RPF
-
MOAE_HELPY
A:
[32-44]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
C
--
V
F
V
G
--------------
I
V
-
R
K
E
-----------
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
16.93
15%
0
- C5 -
2WSC
-
PSAL_SPIOL
L:
[109-128]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-----
F
L
L
V
G
P
F
--
V
K
A
G
--------------
P
L
-
R
N
T
-----------
E
Y
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
16.81
20%
-5
* C5 *
4XK8
-
?
L:
[57-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-----
Y
L
L
V
G
P
F
--
V
K
A
G
--------------
P
L
-
R
N
T
-----------
E
I
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
15.45
36%
0
- C1 -
1QR0
1
SFP_BACSU
A:
[88-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
-----------
H
S
G
R
W
V
I
G
A
F
---
D
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------