@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05409: (2016-06-08 )
MKSIDLTILSLKRKGIRTEKVLKNQNPDRLSHMTDKNAQPKSKEKEE
Atome Classification :
(18 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...10...--...-.-----.20-----.......------.---------.30....-.-...40......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKSI
D
L
-
T
I
L
S
L
K
RK--GI
R
-
T
-----
E
K
------
V
LKNQ
N
P
------
D
---------
R
L
S
H
MTD-K-NAQPKSKEKEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
55.54
27%
4
- C2 -
3TNG
7
?
A:
[5-291]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TKSRFFSDVAETSS
F
V
F
A
V
AGADD
E
V
V
L
E
T
I
R
L
A
L
K
Q
KL
G
K
F
L
L
F
G
KKEDKTLTANES
V
T
W
I
Q
T
DT
A
E
A
A
A
Q
G
A
I
L
A
V
K
N
KEAD
I
L
V
K
G
F
I
P
T
A
T
L
M
H
H
V
L
K
K
E
N
--
G
L
R
-
T
-----
D
Q
L
L
S
Q
I
A
I
F
D
I
P
T
Y
------
H
---------
K
P
L
L
I
T
D
C
A
M
N
V
A
P
K
T
K
E
K
I
A
I
T
E
N
A
L
A
V
A
H
Q
I
GITN
P
K
I
A
LLSAVEEVTAKM
P
S
T
L
E
A
Q
E
V
V
Q
H
F
GNQISVSGPLALDVAIS
K
E
A
A
L
H
K
GITDSSAGEAD
I
L
I
A
PN
I
E
T
G
N
A
L
Y
K
S
L
V
Y
FAG
A
K
V
G
S
A
V
V
GAK
V
P
I
V
I
S
S
RNDS
P
E
N
K
L
A
S
F
I
L
T
V
R
L
VEK-------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
48.34
21%
-42
* C3 *
3FXD
-
?
B:
[29-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VTDAT
L
G
S
V
Y
S
-
E
I
I
S
P
V
K
D
--
C
I
L
-
T
-----
V
A
------
K
A
V
S
F
N
P
GG
K
D
N
T
D
---------
A
V
E
V
L
T
E
-
L
-
N
T
K
V
E
R
A
A
L
N
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
47.39
17%
12
- C2 -
2MNY
1
A:
[1-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
D
L
-
Y
V
C
L
L
C
G
S
--
G
N
D
-
E
-----
D
R
------
L
L
L
C
D
G
C
------
D
---------
D
S
Y
H
T
F
C
-
L
-
I
P
P
L
H
D
V
P
K
G
D
W
R
C
P
K
C
L
A
Q
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
46.57
14%
-25
- C3 -
2K53
-
?
A:
[1-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKITKDMI
I
A
D
V
L
Q
M
DRGT
A
P
I
F
I
N
N
G
M
-
H
C
L
G
C
P
S
S
--
M
G
E
S
I
-----
E
D
------
A
C
A
V
H
G
I
------
D
---------
A
D
K
L
V
K
E
-
L
-
N
E
Y
F
E
K
K
E
V
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
41.57
21%
-100
- C3 -
2E5Z
-
A:
[27-59]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
D
K
-
L
A
E
Y
V
A
R
N
--
G
L
K
-
F
-----
E
T
------
S
V
R
A
K
N
D
------
Q
---------
R
F
E
F
L
Q
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
39.59
19%
-150
- C3 -
1U9L
1
NUSA_ECOLI
A:
[18-44]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
A
T
V
L
V
E
E
--
G
F
S
-
T
-----
L
E
------
E
L
A
Y
V
P
M
------
K
---------
E
L
L
E
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
38.07
10%
32
- C3 -
2HXT
2
FUCD_XANCP
A:
[2-435]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTII
A
L
E
T
H
DVRFPTSRELDGSDAMNPDPDYSAA
Y
V
V
LRTDGAEDL
A
G
Y
G
L
V
F
T
IGRG
N
D
V
Q
T
A
A
V
A
A
L
AEHVVGLS
V
D
K
V
I
A
D
L
G
A
F
A
R
R
L
T
N
D
S
Q
L
R
W
L
GPEKG
V
M
H
M
A
I
G
A
V
I
N
-
A
A
W
D
L
A
A
R
A
A
N
K
P
-
L
-----
W
R
------
F
I
A
E
L
T
P
------
E
---------
Q
L
V
D
T
I
D
-
F
-
R
Y
L
S
D
A
L
T
R
D
E
A
L
A
I
L
R
D
A
QPQ
R
A
A
R
T
A
T
L
I
E
Q
G
Y
P
A
Y
T
TSPGWLGYS
D
E
K
L
V
R
L
A
K
E
A
V
A
D
GFR
T
I
K
L
K
V
G
AN
V
Q
D
D
I
R
R
C
R
L
A
R
A
A
I
GPD
I
A
M
A
V
D
ANQRWD
V
G
P
A
I
D
W
M
R
Q
L
AEFDIA
W
I
E
EPTSPDD
V
L
G
H
A
A
I
R
Q
G
ITPV
P
V
S
T
G
EHTQN
R
V
V
F
K
Q
L
L
Q
A
GAVD
L
I
Q
I
D
AARVGG
V
N
E
N
L
A
I
L
L
L
A
A
K
F
G
V
R
V
F
P
H
AGGVGLCEL
V
Q
H
L
A
M
A
D
F
V
AITGKMED
R
A
I
E
F
V
DHLHQHFLD
P
V
R
I
Q
HG
R
Y
L
A
PEVPGFSAEMH
P
A
S
I
A
E
F
SYPDG
R
F
W
V
E
D
L
A
15
Fugue
33.96
18%
67
* C2 *
1QXF
-
RS27_ARCFU
A:
[1-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
S
----
R
F
V
K
V
K
C
P
--
D
C
E
-
H
-----
E
Q
------
V
I
F
D
H
P
S
------
T
IVKCIICGR
T
V
A
E
P
T
G
-
G
-
K
G
N
I
K
A
E
I
I
E
Y
VDQIE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
32.64
33%
-66
- C3 -
4HV0
-
?
A:
[79-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
L
K
K
R
--
G
T
T
-
L
-----
N
R
------
F
L
K
E
M
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
30.88
25%
-1190
* C4 *
3HHW
-
PHOSP_VSIVM
A:
[66-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
-
I
L
L
G
L
R
Y
K
--
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
30.07
29%
-21
- C3 -
2E60
-
A:
[30-53]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
E
R
-
T
A
S
F
V
C
R
Q
--
G
A
Q
-
F
-----
E
I
------
M
L
K
A
K
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
24.66
14%
5
- C2 -
2KSW
-
?
A:
[1-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPVGSDCEPK
L
C
T
M
D
L
V
P
H
-
C
F
L
N
P
E
K
G
--
I
V
V
-
V
H
G
G
C
A
L
S
------
K
Y
K
C
Q
N
P
------
N
---------
H
E
K
L
G
Y
T
-
H
-
E
C
E
E
A
I
K
N
A
P
R
P---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
24.36
25%
-648
- C4 -
2K47
-
A:
[50-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
-
I
L
L
G
L
R
Y
K
--
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
23.20
20%
-5
- C3 -
2DT6
-
SF3A1_HUMAN
A:
[51-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
V
D
K
-
T
A
S
F
V
A
R
N
--
G
P
E
-
F
-----
E
A
------
R
I
R
Q
N
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
21.99
38%
-93
- C1 -
4OZK
-
?
A:
[3-15]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
Q
C
P
------
D
---------
A
I
S
G
W
T
H
-
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
18.83
21%
3
- C3 -
1UG0
-
A:
[30-53]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
E
K
-
L
A
R
F
V
A
E
G
--
G
P
E
-
L
-----
E
K
------
V
A
M
E
D
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
16.60
10%
233
- C3 -
3B9W
2
?
A:
[8-369]
IN
E
A
R
L
V
A
Q
Y
N
Y
S
I
N
I
L
A
M
L
L
V
G
F
G
F
L
M
VFVRRY
G
F
S
A
T
T
G
T
Y
L
V
V
A
T
G
L
P
L
Y
I
L
L
R
A
N
GIFGHALTPHS
V
D
A
V
I
Y
A
E
F
A
V
A
T
G
L
I
A
M
G
A
V
LGRLR
V
F
Q
Y
A
L
L
A
L
F
I
V
P
V
Y
L
L
N
E
W
L
VLDNASGLTEGFQDSAGSIAI
H
A
F
G
A
Y
F
G
L
G
V
S
I
A
LTT
A
A
Q
R
A
QPIESD
A
T
S
D
R
F
S
M
L
G
S
M
V
L
W
L
F
W
P
S
F
A
T
A
IVPFEQ
M
P
Q
T
I
V
N
T
L
L
A
L
C
G
A
T
L
A
T
Y
F
L
S
A
L
F
H
KGKAS
I
V
D
M
A
N
AAL
A
G
G
V
A
I
GSVCNIVG
P
V
G
A
F
V
I
G
L
L
G
G
A
I
S
V
V
G
F
V
F
I
Q
P
M
L
E
S
KAKTIDTCGVHNLHG
L
P
G
L
L
G
G
F
S
A
I
L
I
V
PGI
A
V
A
Q
L
T
G
I
G
I
-
T
L
A
L
A
L
I
G
--
G
V
I
-
A
-----
G
A
------
L
I
K
L
T
G
T
------
T
---------
K
Q
A
Y
E
D
S
-
H
-
E
F
I
H
L
A
G
P
E
D
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
16.54
13%
9
- C3 -
1X4O
-
A:
[20-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
K
-
L
A
R
F
I
A
D
G
--
G
P
E
-
V
-----
E
T
------
I
A
L
Q
N
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------