@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05450: (2016-06-08 )
MFGTIFNTVMIIAGSIIGGIFKKGIKDEYQDILMQAMGFAAVALGINAITQHLPDSKYPILFIVSLAIGGLLGQIINLELRFNKLVNKFSKSNLAEGLSTAVLLFCIGSLSILGPVEAALHGDYTYLLTNGMLDGITSIVLASTFGFGIAAAALVLFSWQGSIYLFAQVMESAINTDLINEITIVGGILILSSGLSILGIKKFKTLNLLPSLLIPPVVIFVIHAFGLRF
Atome Classification :
(20 SA)
-------------------------------------------------.........10.-...-...-.20.-.--...----.------..30.--....---.--..40........50.......--.----------60....-------------------------....70...---------....-.----80........---90-.........100-----.--.....-----..110.---......120-.-.....-..130.......140..-----------.....150.......-.160---........170.......--180.......190......-.200--........210-------.-......-----------220.------......-----------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------M
F
G
T
I
F
N
T
V
M
I
I
-
A
G
S
-
I
I
G
-
G
I
F
K
-K--G
I
K
----
D
------
E
Y
Q
D
I
--
L
M
Q
A
---
M
--
G
F
A
A
V
A
L
G
I
N
A
I
T
Q
HLPDSKY--
P
----------
I
L
F
I
V
S
-------------------------
L
A
I
G
G
L
L
G
Q
---------
I
I
N
L
-
E
----
L
R
F
N
K
L
V
N
K
F
---
S
--
K
S
N
L
A
E
G
L
S
T
A
------
V
--
L
L
F
C
I
-----G
S
L
S
I
L
---
G
P
V
E
A
A
LH--G-
D
Y
T
Y
L
-LTN
G
M
L
D
G
I
T
S
I
V
L
A
S
T-----------F
G
F
G
I
A
A
-
A
A
L
V
L
FS-WQG----
S
I
Y
L
F
A
Q
V
M
E
S
AIN
T
D
L
I
--
N
E
I
T
I
V
G
G
I
L
I
L
SSG
L
S
I
L
-G
I
K
---
K
F
K
T
L
N
L
L
P
S
L-------L-
I
P
P
V
V
I
-----------
F
V
I
H
------
A
FGLRF-----------------------------------------------------------
22
Fugue
83.03
15%
-196
- C4 -
4XGC
-
A:
[38-388]
PCRE
R
E
F
E
N
I
Y
A
F
L
E
G
K
I
Q
D
QC
M
Y
V
S
G
V
PGTG
K
T
A
T
V
T
G
V
I
R
T
L
QE
Y
L
E
I
N
G
M
R
L
T
E
P
R
Q
A
-
Y
V
Q
-
I
Y
K
-
Q
L
T
G
-
K
--
T
V
S
----
W
------
E
Q
A
H
A
--
L
L
E
K
---
R
--
T
T
V
L
L
V
D
E
L
D
I
L
C
N
R
R
Q
D
V
V
Y
--
N
----------
L
L
D
W
P
T
-------------------------
K
L
V
V
V
T
I
A
N
---------
T
M
D
L
-
P
----
E
R
L
G
L
T
R
L
T
F
Q
P
Y
S
--
H
K
Q
L
Q
E
I
V
T
A
R
L
GKGE
A
V
--
Q
L
V
A
R
-----
K
V
A
A
V
S
---
G
D
A
R
R
A
L
D
I
C
R
-
R
A
T
E
I
-
A
D
T
A
A
V
K
C
V
T
M
L
H
V
Q
Q
A
-----------
L
A
E
M
I
A
S
-
A
K
V
Q
A
I
R
N
C
S
R
----
M
E
Q
I
F
L
Q
A
I
A
A
E
V
T
R
T
G
V
--
E
E
T
T
F
M
G
V
Y
Q
Q
V
E
T
I
A
A
F
M
-
G
V
T
F
P
P
P
G
R
A
L
R
L
C
S
K
L
-------
G
-
A
E
R
L
I
I
S
E
HSRNDLF
Q
K
I
L
L
N
VS
A
D
D
I
H
Y
A
L
R
V
-----------------------------------------------------------
23
Fugue
69.58
18%
-156
- C3 -
4DVG
-
?
B:
[8-312]
---------------------------------------------------
E
V
V
Q
Q
K
F
A
I
V
-
A
K
E
M
K
I
D
-
N
P
E
L
-
I
--
T
I
P
----
N
Q
W
K
L
V
Q
E
Y
E
K
K
--
Q
K
K
D
---
I
--
R
I
Q
L
N
A
Q
K
T
G
N
W
R
N
A
I
T
D
P
K
Y
--
L
----------
A
D
L
L
K
T
RDD
M
D
L
L
N
E
M
V
V
V
F
R
S
SS
V
S
F
I
K
T
F
V
S
V
G
G
L
A
-------------
N
L
M
A
----
I
Y
K
K
K
I
E
A
E
N
---
S
--
N
T
A
I
D
E
E
R
K
C
C
------
E
--
V
L
R
Y
V
F
AE
E
D
A
T
V
A
L
I
E
ID
G
G
V
E
L
L
L
K
--
G
M
N
S
K
R
I
-
T
P
D
N
Q
L
D
I
L
L
E
I
T
L
T
S
S
MVEHPSQEGLY
L
G
G
D
V
C
V
M
N
A
F
S
N
L
V
-
S
E
G
VDMK
K
F
L
S
F
F
S
L
F
S
K
S
K
S
E
K
F
K
--
H
A
S
L
V
L
I
N
N
L
I
D
Q
P
E
L
E
H
R
M
D
V
R
N
--
S
F
I
E
I
G
L
V
N
E
L
E
N
M
K
N
TE
W
M
K
I
D
K
I
K
-----------
D
S
I
N
------
D
F
F
D
S
W
E
E
D
K
K
E
V
E
S
R
F
D
D
L---------------------------------------------
16
Fugue
64.18
16%
-131
* C7 *
4PW8
1
T23O_HUMAN
A:
[26-367]
-------------------------------------------------
I
Y
G
N
Y
L
H
L
E
K
V
L
N
A
Q
E
-
L
Q
S
-
E
T
K
G
-
N
--
K
I
H
----
D
------
E
H
L
F
I
--
I
T
H
Q
A
Y
E
L
--
W
F
K
Q
I
L
W
E
L
D
S
V
R
E
I
F
Q
N
G
H
V
--
R
D
E
R
N
M
L
K
V
V
S
R
M
H
R
V
S
-------------------------
V
I
L
K
L
L
V
Q
Q
---------
F
S
I
L
-
E
T
MT
A
L
D
F
N
D
F
R
E
Y
L
---
S
--
P
A
S
G
F
Q
S
L
Q
F
R
------
L
--
L
E
N
K
I
-----
G
V
L
Q
E
E
---
N
E
L
L
L
K
S
E
--
Q
-
E
K
T
L
L
E
L
V
E
A
W
L
E
R
-
T
P
G
L
E
P
H
G
-----------
F
N
F
W
G
K
L
-
E
K
N
I
T
R
G
-
L
E
E
----
E
F
I
R
I
Q
A
K
E
E
S
E
E
K
E
E
Q
V
--
A
E
F
Q
K
Q
K
E
V
L
L
S
L
F
D
E
K
R
H
-
E
H
L
---
L
S
K
G
E
R
R
L
S
Y
R
-------
A
-
L
Q
G
A
L
M
-----------
I
Y
F
Y
------
R
E
E
P
R
F
Q
V
P
F
Q
L
L
T
S
L
M
D
I
D
S
L
M
T
K
W
R
Y
N
H
V
C
M
V
H
R
M
L
GSRYKVF
V
D
L
F
N
LSTYLIPRHWIPKMN
18
Fugue
57.00
12%
-126
* C6 *
4N77
-
?
A:
[2-239]
------------------------------------------------------
P
T
L
L
I
R
L
-
Q
G
P
-
L
Q
S
W
G
T
R
S
-
R
--
F
D
H
----
R
------
D
T
W
P
Y
PT
K
S
G
V
---
V
--
G
L
L
A
A
A
L
G
R
D
--------
R
R
E
--
D
----------
V
S
D
L
A
A
-------------------------
L
R
M
G
V
R
V
D
R
---------------------
K
G
V
L
K
V
D
Y
---
K
--
R
Y
F
L
S
D
----
A
------
A
--
F
L
V
G
L
E
----
G
E
R
A
L
L
---
E
A
L
H
R
A
L
K
--
N
P
R
F
P
L
Y
-
L
G
R
K
S
Y
V
P
S
P
P
P
Y
L
P
D
G
-----------
L
V
E
A
P
L
A
-
E
A
L
E
G
Y
P
-
Y
L
L
----
G
G
K
-
P
P
E
D
L
L
L
A
L
E
A
E
E
G
--
R
L
V
Y
D
Q
P
A
G
P
F
S
E
R
R
F
A
A
R
-
F
V
R
---
E
E
V
L
P
K
E
R
V
P
E
-------
G
-
P
P
------------------------------------------------------------------------------------------
19
Fugue
52.96
10%
-132
- C6 -
4D53
-
Y689_BORBU
A:
[4-136]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
H
---------
K
I
D
T
-
K
----
E
D
M
K
I
L
Y
S
E
I
---
A
--
E
L
R
K
K
L
N
L
N
H
L
------
E
--
I
D
D
T
L
-----
E
K
V
A
K
E
---
Y
A
I
K
L
G
E
N
--
R
-
T
I
T
H
T
-
L
F
-----
G
T
T
P
M
Q
R
I
H
K
-----------
Y
D
Q
S
F
N
L
-
T
R
E
I
L
A
S
-
G
I
E
----
L
N
R
V
V
N
A
W
L
N
S
P
S
H
K
E
A
L
I
N
T
D
T
D
K
I
G
G
Y
R
L
K
T
T
D
N
I
D
I
-
F
V
V
---
L
F
G
K
R
K
----------------------------------------------------------------------------------------------------------
7
HHSearch
43.32
15%
-112
- C5 -
4O93
-
?
B:
[60-144]
---------------------------------------------------------
L
A
L
L
-
L
G
S
-
V
V
A
-
W
W
A
A
-
V
--
R
V
A
MTD
M
P
------
Q
M
V
A
I
--
Y
N
G
M
---
G
--
G
G
A
A
A
T
I
A
A
V
E
L
L
K
G
A
---
F
E
--
N
----------
T
G
L
M
A
L
-------------------------
A
I
L
G
G
L
I
G
S
V
A
F
T
G
S
L
I
A
F
A
K
L
-
Q
----
G
I
M
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
41.78
12%
-127
* C5 *
2NWL
-
?
A:
[11-116]
--------------------------------------------------------------------------------------------------------------------------------
P
V
--
L
----------
I
K
I
L
I
G
-------------------------
L
I
L
G
A
I
V
G
L
---------
I
L
G
H
-
Y
----
G
Y
A
H
A
V
H
T
Y
V
---
K
P
F
G
D
L
F
V
R
L
L
K
M
L
------
V
M
P
I
V
F
A
S
------
L
V
V
G
A
---
A
S
I
S
---
P
--
A
-
R
L
G
R
V
-
G
V
K
I
V
V
Y
Y
L
L
T
S
A
F
A
V
T
-----------
L
G
I
I
M
A
R
-
L
F
N
P
G
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
41.22
24%
-156
- C7 -
4YIZ
-
?
B:
[2-40]
--------------------------------------------------------------------------------------------------------------------
S
A
S
D
I
T
Q
H
L
N
D
S
G
L
G
P
A
----------
V
E
C
L
E
N
-------------------------
L
V
V
G
P
V
C
P
A
---------
A
V
V
A
-
P
----
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
41.00
15%
-100
- C5 -
4O9U
-
?
B:
[60-153]
---------------------------------------------------------
L
A
L
L
-
L
G
S
-
V
V
A
-
W
W
A
A
-
V
--
R
V
A
MTDM
P
------
Q
M
V
A
I
--
Y
N
G
M
---
G
--
G
G
A
A
A
T
I
A
A
V
E
L
L
K
G
A
---
F
E
--
N
----------
T
G
L
M
A
L
-------------------------
A
I
L
G
G
L
I
G
S
V
A
F
T
G
S
L
I
A
F
A
K
L
-
Q
----
G
I
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
40.13
27%
-96
- C5 -
1EKE
-
RNH2_METJA
A:
[108-171]
--------------------------------------------------------
E
I
Y
I
D
-
A
C
S
-
T
N
T
-
K
K
F
E
-
D
--
S
F
K
----
D
------
K
I
E
D
I
--
I
K
E
R
---
N
--------
L
N
I
K
I
I
A
E
H
K
A
D
A
K
Y
--
P
----------
V
V
S
A
A
S
-------------------------
I
I
A
K
A
E
R
D
E
---------
I
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_CBE
39.49
37%
-91
- C5 -
2QQ6
1
?
B:
[132-177]
--------------------------------------------------------
T
V
D
A
A
-
A
H
H
-
I
E
G
-
G
L
F
E
-
E
--
G
S
N
----
E
------
E
Y
I
A
V
--
A
R
E
A
---
V
E
R
G
F
D
A
I
K
L
D
V
D
D
I
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
38.03
37%
-85
- C5 -
2QQ6
1
?
A:
[132-178]
--------------------------------------------------------
T
V
D
A
A
-
A
H
H
-
I
E
G
-
G
L
F
E
-
E
--
G
S
N
----
E
------
E
Y
I
A
V
--
A
R
E
A
---
V
E
R
G
F
D
A
I
K
L
D
V
D
D
I
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.98
24%
-151
- C5 -
1T5J
1
Y1187_METJA
A:
[257-286]
-------------------------------------------------------
D
S
L
A
S
M
-
Y
G
A
-
M
A
G
-
A
Y
Y
G
F
K
--
N
I
P
----
K
------
E
W
I
D
G
--
L
K
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
32.25
19%
-133
- C5 -
2LS4
-
A:
[4-19]
------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
C
I
A
-------------------------
V
A
A
G
A
G
T
G
Y
---------
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
31.48
23%
32
- C5 -
1IFP
-
?
?:
[1-44]
--------------------------------------------------------------
M
Q
S
-
V
I
T
-
D
V
T
G
-
Q
L
T
A
V
Q
----
A
------
D
I
T
T
I
--
G
G
A
I
---
I
--
V
L
A
A
V
V
L
G
I
R
W
I
K
A
Q
F
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.96
27%
-12
- C5 -
4XYP
1
?
A:
[45-59]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
I
G
E
---------
Y
L
N
I
-
S
----
S
W
L
E
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
29.95
7%
56
- C5 -
2MMM
-
?
A:
[27-41]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---------
L
K
K
L
-
G
----
K
K
L
E
G
A
G
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
27.43
12%
14
- C2 -
4GKW
-
SAS6_CAEEL
A:
[250-407]
----------------------------------------------------------------------
E
D
K
E
-
D
--
E
V
A
----
D
------
L
K
Q
D
T
--
E
S
L
Q
---
K
--
Q
L
E
E
N
Q
E
E
L
E
I
V
G
N
M
L
R
E
E
Q
G
--
K
----------
V
D
Q
L
Q
K
-------------------------
R
N
V
A
H
Q
-
K
E
---------
I
G
K
L
-
R
----
A
E
L
G
T
A
Q
R
N
L
---
E
--
K
A
D
Q
L
L
K
R
N
S
Q
------
Q
--
Q
N
Q
Q
S
-----
L
D
M
R
K
L
---
G
E
L
E
A
D
---------------------------------------------------------------------
L
K
E
K
D
S
M
V
E
S
L
T
--
E
T
I
G
I
L
R
K
E
L
E
N
E
K
L
K
A
A
E
-
N
M
D
---
S
F
E
K
L
S
M
E
N
E
N
-------
L
-
K
E
K
I
A
H
-----------
Y
R
A
Q
------
R
F
---------------------------------------------------------------
21
Fugue
14.02
20%
181
- C1 -
2BTA
1
?
?:
[1-15]
-------------------------------------------------------------------------
M
-
E
--
E
L
Q
----
D
------
D
Y
E
D
M
--
M
E
E
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
6.85
36%
0
- C- -
1JB0
-
PSAI_THEEB
I:
[6-16]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
S
F
L
P
W
I
-------
F
-
I
P
------------------------------------------------------------------------------------------