@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05500: (2016-06-08 )
MEDAGLLLIRIMIGVVFLFYGTQKLFGWFGGYGIKGTGQWFESIGVKPGNVAAALSGLGELVSGILFILGVFLPLGAAIITIIMLGAIVKVHGAKGFANGAGGFEYNLVLIAVSIGVALIGSGAYALHF
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-.....10.-----..----.-------------....-20........--30---........----------------.40....------.----------.-..50----.......-------.60----...-----...------..70........80....-----....90.....----...100.......110-----.......120.......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MED
A
-
G
L
L
L
I
R
I
M
-----
I
G
----
V
-------------
V
F
L
F
-
Y
G
T
Q
K
L
F
G
W
F--G----GYGIK
G
T
G
----------------
Q
W
F
E
SIG------V----------K-P
G
N
V
----
A
A
A
L
S
G
L
-------
G
E
L
----
V
S
G
-----
I
L
F
------
I
L
G
V
F
L
P
L
G
A
A
I
I
T
I
I
M
L
-----
G
A
I
V
K
VHGAKG----FANGAGG
F
E
Y
N
L
V
L
I
A
-----
V
SI
G
V
A
L
IGS
G
A
Y
A
LHF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
69.23
17%
-179
- C6 -
4V29
2
CAR4_ARATH
A:
[13-177]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
D
L
L
G
L
L
R
I
R
I
K
-----
R
G
----
V
NLAVRDISSSD
P
Y
V
V
V
K
-
M
G
K
Q
K
L
K
T
R
V
--
I
----
N
K
D
V
N
P
E
W
----------------
N
E
D
L
T
L
S
------
V
----------
T
-
D
S
N
L
----
T
V
L
L
T
V
Y
D
H
D
MF
S
K
D
D
K
----
M
G
D
-----
A
E
F
------
E
I
K
P
Y
I
E
A
L
R
M
Q
L
D
G
L
P
S
-----
G
T
I
V
T
T
V
K
P
S
R
RNCL
A
E
E
S
R
V
T
W
V
D
G
K
L
V
Q
D
-----
L
V
L
R
L
R
H
V
E
C
G
E
V
E
A
Q
L
Q
W
I
D
L
P
GSKGL---------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
69.11
22%
-192
- C7 -
4K70
22
?
A:
[2-483]
PG
S
M
E
A
L
V
R
A
L
E
EADHAV
A
T
V
V
Q
S
R
I
L
E
F
F
M
AA
G
R
E
T
P
A
G
V
R
G
L
W
A
R
A
L
R
L
A
C
R
A
Y
V
E
TGT
C
E
A
A
V
L
A
E
N
L
A
G
L
A
L
W
RLRHDWDEGT
A
P
L
L
E
L
L
G
V
V
N
G
D
D
T
T
A
A
L
T
E
A
GLRTSAEFG
P
D
A
M
F
R
L
V
S
E
W
C
A
A
F
D
E
A
L
AGARS
A
D
D
V
L
A
A
P
R
V
V
P
PEQTARALVQPRFATLYDM
D
F
V
Q
D
G
L
R
Y
V
A
Q
H
TNWA
L
P
L
A
L
A
V
R
Q
M
Q
N
E
-
G
L
---
K
P
L
-----
T
R
----
A
-------------
L
F
A
L
-
T
I
A
D
E
F
F
H
------------
D
R
Q
N
P
----------------
T
L
R
E
Q
F
A
------
E
----------
A
-
A
R
A
V
D---
E
A
A
L
V
P
V
-------
G
E
V
NATP
R
T
A
-----
V
E
V
------
R
V
S
A
A
L
A
H
G
D
A
Y
V
R
E
L
R
P
-----
G
T
V
A
R
R
----------------------
L
R
T
-----
D
Q
G
V
L
A
L
L
D
P
G
A
Q
A
V
H
V
A
A
A
A
DLDHTQVDA
T
G
V
W
E
A
V
Q
A
SAS
P
L
Q
V
V
E
A
L
V
T
A
GFT
R
R
H
C
D
L
L
E
R
A
V
L
D
R
APRLT
D
A
Q
R
A
V
G
C
T
A
V
V
G
G
V
V
H
R
L
LDDYGPG
L
D
Y
V
R
A
Y
T
D
V
A
D
T
LEPLYGDVTAALGLPEK
G
V
E
H
V
V
R
H
C
MAPRPPT
E
H
V
G
A
A
R
A
A
L
L
R
E
V
A
A
A
E
R
R
A
GLAHS
A
A
R
E
A
L
N
T
W
L
A
F
R
A
Q
S
R
WGL
19
Fugue
66.56
20%
-209
- C5 -
2N6D
-
GNPTA_HUMAN
A:
[1-172]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
V
P
M
L
V
L
D
P
A
L
P
ANITLKDLPSLYPS
F
H
S
A
-
S
D
I
F
N
V
A
K
PKNPS
T
N
----
V
-------------
S
V
V
V
-
F
D
S
T
K
D
V
E
D
A
--
H
----
S
G
L
L
K
G
N
S
----------------
R
Q
T
V
W
R
G
Y
L
T
TDK
E
----------
V
-
P
G
L
V
L
M
Q
D
L
A
F
L
S
G
F
-------
P
P
T
----
F
K
E
-----
T
N
Q
------
L
K
T
K
L
P
E
N
L
S
S
K
V
K
L
L
Q
L
YSE
A
S
V
A
L
L
K
L
N
N
P
K
D
----
F
Q
E
L
N
K
Q
T
K
K
N
M
T
I
D
---------
G
K
E
L
T
I
S
P
A
Y
L
L
W
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
57.71
20%
-105
- C7 -
3GW4
-
?
A:
[8-199]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
Y
A
L
A
E
R
Q
A
Q
A
L
L
A
H
P
-
A
T
A
S
G
A
R
F
M
----
L
G
----
Y
-------------
V
Y
A
F
M
D
R
F
D
E
A
R
A
S
F
--
Q
----
A
L
Q
Q
Q
A
Q
K
S
GD
H
T
A
E
H
--------
R
A
L
H
Q
V
G
M
-----
V
E
---------
R
M
A
G
N
W
----
D
A
A
R
R
C
F
-------
L
E
E
----
R
E
L
-----
L
A
S
------
L
P
----
E
D
P
L
A
A
S
A
N
A
Y
E
-----
V
A
T
V
A
L
H
F
G
D
-----
L
A
G
A
R
Q
E
Y
E
K
S
L
V
Y
A
Q
Q
A
DD
Q
V
A
I
A
C
A
F
R
G
L
G
D
L
A
Q
Q
E
KN
L
L
E
A
Q
Q
H
W
L
R
A
R
D
I
F
A
E
L
ED
S
E
A
V
N
E
L
M
T
R
L
N
G
LEH------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
53.78
12%
-189
* C7 *
2HFI
-
YPPE_BACSU
A:
[1-123]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
S
Q
------
T
L
L
-----
E
M
----
T
-------------
E
Q
M
I
-
E
V
A
E
K
G
A
D
R
Y
--
Q
----
E
G
K
N
S
N
H
S
Y
---------------
D
F
F
E
T
I
K
------
P
----------
A
-
V
E
E
N
----
D
E
L
A
A
R
W
-------
A
E
G
----
A
L
E
-----
L
I
K
V
RRPKY
V
H
K
E
Q
I
E
A
V
K
D
N
F
L
E
L
V
L
-----
Q
S
Y
V
H
H
I
H
K
K
R
----
F
K
D
I
T
E
S
V
L
Y
T
L
H
A
V
K
-----
D
E
I
A
R
E
--
D
S
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
49.08
9%
-161
- C7 -
2K5G
-
?
A:
[1-191]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSPS
S
A
F
P
D
G
H
G
AR
L
D
A
Q
-
S
I
R
F
E
R
L
L
-----
P
G
PI
E
R
V
-------------
W
A
W
L
-
A
D
A
D
K
R
A
R
W
L
A
G
G
----
E
L
P
R
Q
P
G
Q
----------------
T
F
E
L
H
F
N
------
H
AALTAETAPA
R
-
Y
A
Q
Y
----
D
R
P
I
V
A
R
-------
H
T
L
----
L
R
C
EPP
R
V
L
A
L
------
T
W
G
G
G
A
G
E
A
P
S
E
V
L
F
E
L
S
E
A
GE
Q
V
R
L
V
L
T
H
T
R
L
A
----
D
R
A
A
M
L
D
V
A
G
G
W
H
A
H
L
-----
A
V
L
A
G
K
L
A
G
Q
A
P
P
P
F
W
T
T
L
A
Q
A
E
Q
D
Y
E
Q
R
LLEH
H
H
H
H
H-----------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.04
38%
-345
- C2 -
1FRY
-
A:
[17-24]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
-
G
P
T
V
L
R
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
40.44
57%
-49
* C8 *
2I6V
-
GSPC_VIBCH
A:
[250-268]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
S
I
G
------
L
----------
Q
-
D
G
D
M
----
A
V
A
L
N
G
L
-------
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
40.32
61%
-55
- C8 -
2I4S
-
GSPC_VIBCH
A:
[250-267]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
S
I
G
------
L
----------
Q
-
D
G
D
M
----
A
V
A
L
N
G
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.25
25%
-277
- C6 -
3AIA
1
TRMY_METJA
A:
[37-56]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
C
R
C
V
-----
S
D
----
A
-------------
F
F
L
S
-
H
D
I
R
R
D
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
30.21
25%
-32
- C6 -
2NSV
-
MEN1_EUPNO
A:
[1-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
E
D
W
F
--
T
PDTC
A
Y
G
D
S
N
T
A
W
T
T
C
T
TPGQT
C
Y
T
C
C
S
S
C
F
D
V
V
G
------
E
----------
Q
-
A
C
Q
M
----
S
A
Q
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
25.16
18%
-162
- C1 -
2LX0
-
?
A:
[5-15]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
W
E
V
----
I
A
G
-----
L
V
A
------
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
24.03
28%
31
* C6 *
2M04
-
B:
[1-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
----------------
Q
W
A
R
E
I
G
------
A
----------
Q
-
L
R
R
M
----
A
D
D
L
N
A
Q
-------
Y
E
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
23.58
16%
-94
- C6 -
3RKO
-
NUOK_ECOBD
K:
[63-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
----
L
A
I
S
L
A
A
-------
A
E
A
----
S
I
G
-----
L
A
L
------
L
L
Q
L
H
R
R
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
22.65
18%
-90
- C3 -
2L16
-
TATAD_BACSU
A:
[15-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
A
L
I
I
F
G
P
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
21.62
17%
-228
- C6 -
2MPN
-
YGAP_ECOLI
A:
[115-132]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
Q
I
A
-----
A
G
----
G
-------------
L
I
L
I
-
G
V
V
L
G
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
21.12
25%
-225
- C6 -
2AMN
-
A:
[4-23]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
-
W
P
L
V
I
R
T
V
-----
I
A
----
G
-------------
Y
N
L
Y
-
R
A
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
20.11
33%
41
- C6 -
2LZR
-
TATA_ECOLI
A:
[13-24]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
I
V
V
L
L
F
G
P
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
19.78
27%
133
- C6 -
4HNJ
-
C:
[2-23]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
----------------
Q
W
A
R
E
I
G
------
A
----------
Q
-
L
R
R
M
----
A
D
D
L
N
A
Q
-------
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
18.16
38%
-
- C4 -
2K1K
-
EPHA1_HUMAN
A:
[557-564]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
-----
A
A
L
------
L
L
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------