@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05540: (2016-06-08 )
MIELEVVIRTVASFGLLLIAERILGKQTISQMTIFDFIAAITLGAIAAGLAYNTSIKPHNMAISFSIFVLTIFLISFLSIKNRKLRKFFAGDPTVLIQNGKILESNMRKMRYTLDYLNQQLREKEIFNIEEVLFAILETNGQLTVLRKPQFRHVTKQDLMIAVNQEQRLPIELIMDGEIIENNLKQNRLTESWLLEELRKRDIKVKETVYAVLLGNGDIYVDQYKDHISVPMDKE
Atome Classification :
(20 SA)
----------------------------------------.....------....----10-----------..-----..-....-.--------------20...-.-..--------.---.30--------....-..--------..40.......-----------.-50-..-------.....--.60....-..-------.-..70-..-.------.----------------------------....80........90---------.--......--.---100.....-----------------...110.........120....---------.---..130-...----....-------140...-....150....-...160..---------------------------......170...------..----..180----.......190.......200----..-.-.....210.......220...-------....230...---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------
M
I
E
L
E
------
V
V
I
R
----
T
------------
V
A
-----
S
F
-
G
L
L
L
-
I
--------------
A
E
R
I
L
-
G
-
K
Q
--------
T
---
I
S
Q
--------
M
T
I
F
-
D
F
--------
I
A
A
I
T
L
G
A
I
A
A
-----------G-LA-YN-------TSIKP--H
N
-
M
A
I
S
-
F
S
-------
I
-
F
V
L
T
-
I
F
-
L
------
I
----------------------------
S
F
L
S
I
K
N
R
K
L
R
K
F
FAG---------D--
P
T
V
L
I
Q--N---G
K
-
I
L
E
S
N
-----------------
M
R
K
M
--
R
Y
T
L
D
Y
L
N
Q
Q
L
R
E
K
EI---------F---
N
I
E
E
V
-
L
F
A
----
I
L
ET-------NG
Q
L
T
V
-LRKPQFRHVTK-Q
D
L
M
-
I
A
V---------------------------NQEQRL
P
I
E
L
I
M------D
G
----
E
I
I
E
N
----
N
L
K
QNRL
T
E
S
W
L
L
E
E
L
R
KR-----DI-
K
-
V
K
E
T
V
Y
A
V
L
LGNG
D
I
Y
V
D
Q
Y
K
-------
D
HISVPMDKE---------
21
PsiBlast_CBE
87.87
35%
-156
- C7 -
3C6F
1
YETF_BACSU
D:
[16-153]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
--
K
---
G
E
-
L
Q
Y
K
V
-----------------
M
K
K
N
--
K
I
D
I
N
Q
L
Q
S
M
L
R
Q
A
G
S
---------
F
---
S
I
Q
E
V
-
E
Y
A
----
I
M
E
T
-------
N
G
M
V
S
V
-
L
P
K
S
D
F
D
K
P
T
N
-
K
D
M
Q
-
I
P
----------------------------
S
K
S
V
S
L
P
I
T
L
I
I
------
D
G
----
E
I
V
R
D
----
N
L
K
E
A
G
V
D
E
Q
W
L
K
Q
E
M
K
K
K
-----
N
I
D
K
-
T
E
D
V
L
F
A
E
W
H
K
N
K
P
L
Y
T
V
T
Y
E
-------
Q
S
R
S
T
--------------
23
HHSearch
87.83
36%
-168
- C7 -
3C6F
1
YETF_BACSU
A:
[16-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
--
K
---
G
E
-
L
Q
Y
K
V
-----------------
M
K
K
N
--
K
I
D
I
N
Q
L
Q
S
M
L
R
Q
A
G
S
---------
F
---
S
I
Q
E
V
-
E
Y
A
----
I
M
E
T
-------
N
G
M
V
S
V
-
L
P
K
S
D
F
D
K
P
T
N
-
K
D
M
--
Q
I
P
---------------------------
S
K
S
V
S
L
P
I
T
L
I
I
------
D
G
----
E
I
V
R
D
----
N
L
K
E
A
G
V
D
E
Q
W
L
K
Q
E
M
K
K
K
-----
N
I
D
K
-
T
E
D
V
L
F
A
E
W
H
K
N
K
P
L
Y
T
V
T
Y
E
-------
Q
S
R
S
---------------
1
PsiBlast_PDB
87.60
35%
-168
- C7 -
3C6F
1
YETF_BACSU
A:
[16-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
--
K
---
G
E
-
L
Q
Y
K
V
-----------------
M
K
K
N
--
K
I
D
I
N
Q
L
Q
S
M
L
R
Q
A
G
S
---------
F
---
S
I
Q
E
V
-
E
Y
A
----
I
M
E
T
-------
N
G
M
V
S
V
-
L
P
K
S
D
F
D
K
P
T
N
-
K
D
M
Q
-
I
P
----------------------------
S
K
S
V
S
L
P
I
T
L
I
I
------
D
G
----
E
I
V
R
D
----
N
L
K
E
A
G
V
D
E
Q
W
L
K
Q
E
M
K
K
K
-----
N
I
D
K
-
T
E
D
V
L
F
A
E
W
H
K
N
K
P
L
Y
T
V
T
Y
E
-------
Q
S
R
S
---------------
22
PsiBlast_CBE
87.43
35%
-175
- C7 -
3C6F
1
YETF_BACSU
B:
[16-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
--
K
---
G
E
-
L
Q
Y
K
V
-----------------
M
K
K
N
--
K
I
D
I
N
Q
L
Q
S
M
L
R
Q
A
G
S
---------
F
---
S
I
Q
E
V
-
E
Y
A
----
I
M
E
T
-------
N
G
M
V
S
V
-
L
P
K
S
D
F
D
K
P
T
N
-
K
D
M
Q
-
I
P
----------------------------
S
K
S
V
S
L
P
I
T
L
I
I
------
D
G
----
E
I
V
R
D
----
N
L
K
E
A
G
V
D
E
Q
W
L
K
Q
E
M
K
K
K
-----
N
I
D
K
-
T
E
D
V
L
F
A
E
W
H
K
N
K
P
L
Y
T
V
T
Y
E
-------
Q
S
R
S
---------------
33
Fugue
86.98
35%
-169
* C7 *
3C6F
1
YETF_BACSU
A:
[16-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
--
K
---
G
E
-
L
Q
Y
K
V
-----------------
M
K
K
N
--
K
I
D
I
N
Q
L
Q
S
M
L
R
Q
A
G
S
---------
F
---
S
I
Q
E
V
-
E
Y
A
----
I
M
E
T
-------
N
G
M
V
S
V
-
L
P
K
S
D
F
D
K
P
T
N
-
K
D
M
Q
-
I
P
----------------------------
S
K
S
V
S
L
P
I
T
L
I
I
------
D
G
----
E
I
V
R
D
----
N
L
K
E
A
G
V
D
E
Q
W
L
K
Q
E
M
K
K
K
-----
N
I
-
D
K
T
E
D
V
L
F
A
E
W
H
K
N
K
P
L
Y
T
V
T
Y
E
-------
Q
S
R
S
---------------
37
Fugue
56.90
17%
-122
- C2 -
4NSD
3
MICU1_HUMAN
A:
[15-349]
-------------------------------------DR
K
V
M
E
Y
E
------
N
R
I
R
A
Y
S
T
P
------------
D
K
-----
I
F
-
R
Y
F
A
T
L
--------------
K
V
I
S
E
-
P
-
G
E
--------
A
---
E
V
F
--------
M
T
P
E
-
D
F
--------
V
R
S
I
T
P
N
H
L
G
L
-----------
D
-
Q
Y
-
I
I
-------
K
S
-
I
F
--
Y
T
-
L
G
E
C
-
G
L
-------
I
S
F
S
D
Y
-
I
F
-
L
------
T
----------------------------
T
V
L
S
T
P
Q
R
N
F
E
I
A
F
K
M
F
DLNGDGEV
D
--
M
E
E
F
E
Q
--
V
---
Q
S
-
I
I
R
S
C
SALTTYFFGADLK
G
K
L
T
I
K
N
F
--
L
E
F
Q
R
K
L
Q
H
D
V
L
K
L
E
F
E
R
HDPVDG
R
I
---
T
E
R
Q
F
-
G
G
M
----
L
L
A
Y
-------
S
G
V
Q
S
K
-
K
L
T
A
M
Q
R
Q
L
K
K
-
H
F
K
E
G
K
G
L
---------------------------
T
F
Q
E
V
E
N
F
F
T
F
L
K
N
I
N
D
V
D
T
----
A
L
S
F
Y
----
H
M
A
G
A
S
L
D
K
V
T
M
Q
Q
V
A
R
T
V
AK
V
E
L
S
D
-
H
-
V
C
D
V
V
F
A
L
F
D
C
D
G
N
G
E
L
S
N
-
K
-------
E
F
V
S
I
M
K
Q
R
L
M--------
24
HHSearch
55.26
23%
-185
- C7 -
3C6F
1
YETF_BACSU
A:
[16-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
------
K
G
----
E
L
Q
Y
K
----
V
M
K
K
N
K
I
D
I
N
Q
L
Q
S
M
L
R
Q
A
-----
G
S
F
S
-
I
Q
E
V
E
Y
A
I
M
E
T
N
G
M
V
S
V
L
P
K
S
-------
D
F
D
K
P
--------------
38
Fugue
55.15
18%
-96
- C- -
3WOZ
-
CLAP2_MOUSE
A:
[645-869]
----------------------------------------
T
E
D
V
A
------
E
V
L
N
----
R
------------
C
A
-----
S
S
-
N
W
S
E
-
R
--------------
K
E
G
L
L
-
G
L
Q
N
--------
L
---
L
K
N
--------
Q
R
T
L
-
S
R
--------
I
E
L
K
R
L
C
E
I
F
T
-----------
R
M
F
A
-
D
------------
P
--
H
G
-
K
V
F
S
M
F
-------------
L
-
E
T
-
L
------
V
----------------------------
D
F
I
Q
V
H
K
D
D
L
Q
D
W
L
F
V
---------
L
--
L
T
Q
L
L
K
--
K
M
--
G
A
D
L
L
G
S
V
-----------------
Q
A
K
V
--
Q
K
A
L
D
I
T
R
E
S
F
P
N
D
L
Q
---------
F
---
N
I
--
L
M
R
F
T
----
V
D
Q
T
-------
Q
----------------
T
-
P
S
L
K
-
V
K
V
---------------------------
A
I
L
K
Y
I
E
T
L
A
K
Q
M-----
D
P
----
R
D
F
T
N
----
S
S
E
T
R
L
A
V
S
R
V
I
T
W
T
T
E
P
K
-----
S
S
-
D
-
V
R
K
A
A
Q
S
V
L
I
S
L
F
E
L
N
T
P
E
F
T
M
------
L
L
G
A
L
P
K
T
F
Q
D
G
A
T
K
L
L
HN
42
Fugue
54.09
16%
-136
- C- -
4YD8
-
PTHB1_HUMAN
A:
[3-369]
-----------------------------LFKARDW
W
S
T
I
L
G
D
K
E
E
F
D
QGC
L
C
L
A
----
N
VDNSGNG
Q
D
K
I
I
V
G
-----
S
F
M
G
Y
L
R
-
I
F
SPHPAKTGDGAQA
E
D
L
L
L
-
E
-
V
D
--------
L
RDP
V
L
Q
--------
V
E
V
G
-
K
F
VSGTE
M
L
H
L
A
V
L
H
S
R
K
L
C
V
Y
S
V
S
G
T
LGNQ
C
Q
M
K
L
M
Y
E
-------
H
N
L
Q
R
T
A
C
N
M
T
Y
G
S
-
F
G
GVKG
R
D
L
I
-
C
I
Q
S
M
D
G
M
L
M
-----
V
F
EQESYA
F
G
R
F
L
P
GFLLP
G
P
L
A
Y
S
SRTD
S
F
L
T
V
S
S
C
Q
Q
V
E
S
Y
K
Y
---------
Q
--
V
L
A
F
A
T
--
D
---
A
D
-
K
L
V
V
D
-----------------
W
T
L
N
IG
E
Q
A
L
D
I
C
I
V
S
F
S
A
S
S
V
---------
F
---
V
L
G
E
R
-
N
F
F
----
C
L
K
D
-------
N
G
Q
I
R
F
M
K
K
L
D
W
----
S
P
-
S
C
F
L
-
P
Y
C
---------------------------
S
V
S
E
G
T
I
N
T
L
I
G
------
N
H
NN
M
L
H
I
Y
Q
D
----
V
T
L
K
W
A
T
Q
L
P
H
I
P
V
A
V
R
V
G
-----
C
L
-
H
-
D
L
K
G
V
I
V
T
L
S
D
D
G
H
L
Q
C
S
Y
L
G
-------
T
D
P
S
L
F
Q
A
P
----------
41
Fugue
51.72
14%
-90
- C4 -
4OBX
2
COQ5_YEAST
A:
[23-257]
---------------------------------------S
V
A
N
R
Y
------
D
L
M
N
----
D
------------
V
M
-----
S
L
-
G
I
H
R
-
L
--------------
W
K
D
H
F
-
I
-
N
K
L
DAGKRPN
S
---
T
T
P
--------
L
N
F
I
-
D
V
--------
A
G
G
--
S
G
D
I
A
F
-----------
G
-
L
L
-
D
H
-------
A
E
S
K
F
--
G
D
-
T
E
S
T
-
M
D
-------
I
-
V
D
I
N
-
P
D
-
M
------
L
----------------------------
K
E
G
E
K
R
A
M
E
Q
G
K
Y
F
-
K
---------
D
--
P
R
V
R
F
L
V
S
N
---
G
E
-
K
L
E
E
I
-----------------
D
S
D
S
--
K
D
I
Y
T
V
S
F
G
I
R
N
F
T
D
I
---------
Q
---
K
G
L
N
T
-
A
Y
R
----
V
L
K
P
-------
G
G
I
F
Y
C
-
L
E
F
S
K
I
------
E
N
P
L
-
M
D
F
---------------------------
A
Y
Q
Q
W
A
K
V
L
P
V
M
------
G
S
----
M
I
A
N
D
----
Y
D
S
Y
Q
Y
L
V
E
S
--
I
E
R
F
-
P
D
-----
Q
E
-
T
-
F
K
S
M
I
E
K
A
G
F
K
S
A
G
Y
E
S
L
T
F
G
-------
I
C
A
I
H
W
G
I
K
V
---------
2
PsiBlast_PDB
46.57
27%
-71
* C4 *
2XOT
-
AMGO1_MOUSE
A:
[89-204]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
R
Y
L
D
--
L
S
S
N
H
L
---------
H
---
T
L
D
E
F
-
L
F
S
----
D
L
Q
A
LEVLLLY
N
N
H
I
V
V
-
V
D
R
N
A
F
E
D
M
A
Q
L
Q
K
L
Y
-
L
S
Q
---------------------------
N
Q
I
S
R
F
P
V
E
L
I
K
--------------
L
P
K
LMLL
D
L
S
S
N
K
L
K
K
L
-
P
L
T
D
L
Q
K
L
-----
P
A
-
W
-
V
K
N
G
L
Y
---
L
H
N
N
P
L
E
C
D
-----------------------------
5
PsiBlast_PDB
43.90
30%
-95
- C6 -
3KSA
2
PARC_STRPN
A:
[166-229]
------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
G
I
-----------
S
-
A
G
-
Y
A
-------
T
D
I
P
P
--
H
N
-
L
A
----
E
-------
V
-
I
D
A
A
-
V
Y
-
M
------
I
----------------------------
D
H
P
T
A
K
I
D
K
L
M
E
F
L
P
G
---------
P
D
F
P
T
G
A
I
I
--
Q
---
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
43.74
19%
-266
- C5 -
1Q02
-
A:
[14-41]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
M
L
S
M
G
F
---------
S
---
D
E
G
G
W
-
L
T
R
----
L
L
Q
T
K
------
N
Y
D
I
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
43.25
32%
-235
- C- -
2GUK
-
?
A:
[74-100]
------------------------------------------------------------------------------------------------------
A
I
R
L
F
V
S
-
G
R
--------
S
---
L
N
S
--------
L
T
P
E
E
D
F
--------
I
I
G
A
M
L
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.07
30%
-64
- C6 -
3RAD
2
PARC_STRPN
A:
[166-222]
------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
G
I
-----------
S
-
A
G
-
Y
A
-------
T
D
I
P
P
--
H
N
-
L
A
----
E
-------
V
-
I
D
A
A
-
V
Y
-
M
------
I
----------------------------
D
H
P
T
A
K
I
D
K
L
M
E
F
L
P
G
---------
P
D
F
P
T
G
A
I
I
--
Q
---
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
42.66
30%
-89
- C6 -
3LTN
2
PARC_STRPN
A:
[166-222]
------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
G
I
-----------
S
-
A
G
-
Y
A
-------
T
D
I
P
P
--
H
N
-
L
A
----
E
-------
V
-
I
D
A
A
-
V
Y
-
M
------
I
----------------------------
D
H
P
T
A
K
I
D
K
L
M
E
F
L
P
G
---------
P
D
F
P
T
G
A
I
I
--
Q
---
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
42.34
30%
-90
- C6 -
3RAF
2
PARC_STRPN
A:
[166-222]
------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
G
I
-----------
S
-
A
G
-
Y
A
-------
T
D
I
P
P
--
H
N
-
L
A
----
E
-------
V
-
I
D
A
A
-
V
Y
-
M
------
I
----------------------------
D
H
P
T
A
K
I
D
K
L
M
E
F
L
P
G
---------
P
D
F
P
T
G
A
I
I
--
Q
---
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
42.28
30%
-91
- C6 -
3K9F
2
PARC_STRPN
A:
[166-222]
------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
G
I
-----------
S
-
A
G
-
Y
A
-------
T
D
I
P
P
--
H
N
-
L
A
----
E
-------
V
-
I
D
A
A
-
V
Y
-
M
------
I
----------------------------
D
H
P
T
A
K
I
D
K
L
M
E
F
L
P
G
---------
P
D
F
P
T
G
A
I
I
--
Q
---
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
41.56
30%
-83
- C6 -
3KSB
2
PARC_STRPN
A:
[166-232]
------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
G
I
-----------
S
-
A
G
-
Y
A
-------
T
D
I
P
P
--
H
N
-
L
A
----
E
-------
V
-
I
D
A
A
-
V
Y
-
M
------
I
----------------------------
D
H
P
T
A
K
I
D
K
L
M
E
F
L
P
G
---------
P
D
F
P
T
G
A
I
I
--
Q
---
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
40.98
11%
-131
- C3 -
1OXS
23
?
C:
[1-352]
MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPS
G
A
G
K
T
------
T
F
M
R
----
I
------------
I
A
GLDVP
S
T
-
G
E
L
Y
-
F
--------------
D
D
R
L
V
-
A
-
S
N
--------
G
---
K
L
I
VPPEDRKI
G
M
V
F
-
Q
T
--------
W
A
L
Y
P
N
L
T
A
F
E
-----------
N
-
I
A
-
F
P
LTNMKMS
K
E
E
I
R
--
K
R
-
V
E
E
V
-
A
K
-------
I
-
L
D
I
H
-
H
V
-
L
NHFPRE
L
----------------------------
S
G
G
Q
Q
Q
R
V
A
L
A
R
A
L
V
K
---------
D
--
P
S
L
L
L
L
--
D
EPF
S
N
-
L
D
A
R
M
-----------------
R
D
S
A
--
R
A
L
V
K
E
V
Q
S
R
L
G
V
T
L
L
---------
V
VSH
D
P
A
D
I
-
F
A
I
ADRV
G
V
L
V
-------
K
G
K
L
V
Q
-
V
G
K
P
E
D
L
Y
D
N
P
-
V
S
I
Q
-
V
A
S
LIGEINELEGKVTNEGVVIGSLRFPVS
V
S
S
D
R
A
I
I
G
I
R
P
------
E
D
----
V
K
L
S
K
----
D
V
I
K
D
D
S
W
I
L
V
G
K
G
K
V
K
V
I
-----
G
Y
-
Q
-
G
G
L
F
R
I
T
I
T
P
L
D
S
E
E
E
I
F
T
Y
S
DHPIHSG
E
E
V
L
V
Y
V
R
K
D
KIKVFEK--