@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05730: (2016-06-09 )
MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDDRTLHKVGQTFSDDKGKAVLKDIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELTHDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDWNKDIYLEELNGELEGGAEKSGNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDVFDHNHKKISDAQKIKIKF
Atome Classification :
(20 SA)
----------.........------10........20........30----....-.....40........50........--60........70........80....-..-.-------.90........100...--.-----------..-..------110.......--.120....------...130...--------....-140-------....--.---.-.150-------..---.----...------------.--------------------160----.-----..-.------.------.------.170.......180-.......190.--..-..-----------..200--........---.-210.......220...----------..------------------------------..230....---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------
M
R
R
I
L
S
I
L
V
------
F
A
I
M
L
AGCSSNAST
E
K
QHAGG-----EK
T
V
-KAEPQSTSSQKDSTDDYQPNSQVTD--
D
R
T
L
H
K
V
GQTFSDDK
G
K
A
V
L
K
D
I
K
Q
V
-NK-T-------YKIG
D
V
E
L
T
V
K
E
M
-
K
L
I
--
H
-----------LR-PD------
Y
S
-
M
I
D
Y
F
H
E
--LTHDEEF
D
------
F
V
K
V
F
V
D
IK--------NTST-
K
K
V
-------
N
V
A
P
--
I
---
A
-
L
M
KT-------NT---G----ETF------------D--------------------WNK----
D
-----
I
Y
-
L
------
E
------
E
------LNGELEGGAEKSG
N
-
L
G
F
I
V
NASSGH--AH-DK-----------AAD----AEKKTK
E
I
---
K
-
W
I
E
I
T
T
S
D
VFDHNHKK----------IS------------------------------DA
Q
K
I
K
I
KF---------
95
Fugue
72.03
19%
-68
- C5 -
4CIJ
-
?
A:
[1-267]
----------
M
S
G
L
K
P
C
V
D
------
W
L
Q
V
T
F
K
-
T
G
Q
D
S
V
K
K
C
V
E
K
L
-----
E
K
V
F
-
E
I
L
G
L
N
-------
E
A
E
F
L
P
---
L
K
N
--
G
K
Y
G
Y
K
Q
G
V
A
F
Q
G
N
P
V
L
A
V
Y
Y
D
G
A
D
D
-
M
G
------------
I
H
V
E
M
T
G
Q
G
C
-
R
L
F
--
E
-----------
L
H
-
T
S
------
I
N
-
W
Y
E
L
F
Y
R
--
L
V
Y
E
Y
E
V
N
------
I
T
R
L
D
V
A
V
D
D
FKGYFK
I
N
T
L
V
-
K
K
L
K
D
DEVTS
R
F
K
K
--
A
---
R
-
H
I
E
N
I
VIEGGE
T
I
---
G
----
H
T
L
------------
Y
--------------------
F
G
A
----
P
SSD
I
Q
V
R
-
F
------
Y
------
E
------
K
N
V
Q
M
G
M
D
I
D
V
W
N
R
-
T
E
I
Q
L
R
D
D
R
A
H
V
V
A
Q
-
I
I
-----------
A
D
D
VLP
L
G
E
I
V
A
G
L
L
---
R
N
Y
I
Q
F
R
T
R
K
A
T
D
K
N
K
K
R
WPLA
R
F
W
L
N
F
L
G
------------------------------
D
V
Q
P
L
R
I
A
K
QM-------
89
Fugue
64.73
14%
-50
* C6 *
5F18
-
A:
[12-232]
--------------------------------
P
S
S
Q
A
R
L
E
K
E
Y
F
D
Q
HFGPF
F
R
T
E
-
Q
L
I
I
R
A
P
L
T
D
K
H
I
Y
Q
P
Y
P
S
G
A
D
---------
V
P
F
G
P
P
L
D
I
Q
I
L
H
Q
V
L
D
L
Q
I
A
I
E
N
I
-
T
-------
A
S
Y
D
N
E
T
V
T
L
Q
D
I
-
C
L
A
--
P
-----------
L
S
-
P
Y
NTN
C
T
I
L
S
-
V
L
N
Y
F
Q
N
---------
S
------
H
S
V
L
D
H
K
K
G
--------
D
D
F
F
-
V
Y
A
-------
D
Y
H
T
--
H
---
F
-
L
Y
C
V
-------
R
A
---
P
----
A
S
L
NDTSLLHDPCLG
T
--------------------
F
G
G
----
P
-----
V
F
-
P
------
W
------
L
------
V
L
G
G
Y
D
D
Q
N
Y
N
N
A
T
-
A
L
V
I
T
F
P
V
N
N
Y
--
Y
N
-
D
T
-----------
E
K
L
----
Q
R
A
Q
A
W
E
K
---
E
-
F
I
N
F
V
K
N
--------------------
Y
------------------------------
K
N
P
N
L
T
I
S
F
T--------
5
PsiBlast_PDB
61.90
22%
-90
- C9 -
4BXC
1
CAPPA_FLATR
A:
[403-538]
-------------------------------------------------------------------------------
T
R
--
E
R
S
R
H
L
L
V
D
G
K
S
D
I
P
D
E
A
V
Y
T
N
V
E
Q
L
--------------
L
E
P
L
E
L
C
Y
R
S
L
-
C
D
C
GD
H
-----------
V
I
-
A
D
------
G
S
-
L
L
D
F
L
R
Q
--
V
S
---
T
F
G
------
L
S
L
V
K
L
D
I
R
--------
Q
E
S
D
-
R
H
T
-------
E
V
L
D
--
A
---
I
-
T
Q
H
L
-------
G
I
---
G
----
S
Y
R
------------
E
--------------------
W
S
E
----
E
-----
K
R
-
Q
------
E
------
W
------
L
L
A
E
L
S
G
-------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
61.87
22%
-79
- C9 -
4BXH
1
CAPPA_FLATR
A:
[403-543]
-------------------------------------------------------------------------------
T
R
--
E
R
S
R
H
L
L
V
D
G
K
S
D
I
P
D
E
A
V
Y
T
N
V
E
Q
L
--------------
L
E
P
L
E
L
C
Y
R
S
L
-
C
D
C
GD
H
-----------
V
I
-
A
D
------
G
S
-
L
L
D
F
L
R
Q
--
V
S
---
T
F
G
------
L
S
L
V
K
L
D
I
R
--------
Q
E
S
D
-
R
H
T
-------
E
V
L
D
--
A
---
I
-
T
Q
H
L
-------
G
I
---
G
----
S
Y
R
------------
E
--------------------
W
S
E
----
E
-----
K
R
-
Q
------
E
------
W
------
L
L
A
E
L
S
G
-------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.45
22%
-88
- C9 -
3ZGE
-
CAPPA_FLATR
A:
[403-550]
-------------------------------------------------------------------------------
T
R
--
E
R
S
R
H
L
L
V
D
G
K
S
D
I
P
D
E
A
V
Y
T
N
V
E
Q
L
--------------
L
E
P
L
E
L
C
Y
R
S
L
-
C
D
C
GD
H
-----------
V
I
-
A
D
------
G
S
-
L
L
D
F
L
R
Q
--
V
S
---
T
F
G
------
L
S
L
V
K
L
D
I
R
--------
Q
E
S
D
-
R
H
T
-------
E
V
L
D
--
A
---
I
-
T
Q
H
L
-------
G
I
---
G
----
S
Y
R
------------
E
--------------------
W
S
E
----
E
-----
K
R
-
Q
------
E
------
W
------
L
L
A
E
L
S
G
-------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.43
22%
-66
* C9 *
3ZGB
1
CAPP1_FLAPR
A:
[385-524]
-------------------------------------------------------------------------------
T
R
--
E
R
S
R
H
L
L
A
H
G
I
S
D
I
P
E
E
A
V
Y
T
N
V
E
Q
F
-
L
E
-
P
-------
L
E
L
C
Y
R
S
L
C
D
C
G
D
-
R
V
I
-----------------
A
D
------
G
S
-
L
L
D
F
L
R
Q
--
V
S
---
T
F
G
------
L
S
L
V
K
L
D
I
R
--------
Q
E
S
D
-
R
H
T
-------
D
V
L
D
--
A
---
I
-
T
Q
H
L
-------
E
I
---
G
----
S
Y
R
------------
E
--------------------
W
S
E
----
E
-----
K
R
-
Q
------
E
------
W
------
L
L
A
E
L
S
G
-------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
55.30
17%
-26
- C8 -
4LES
5
?
A:
[74-187]
------------------------------------------------------------------------------------------------------------
V
-
N
K
-
D
-------
F
H
T
P
K
F
D
V
T
V
K
R
V
-
V
E
R
--
D
-----------
K
V
--
G
------
K
----
E
S
I
G
F
--
Q
K
P
E
D
G
H
V
------
F
I
V
V
E
A
E
G
K
--------
N
I
T
S
-
E
P
M
-------
K
L
A
F
L
P
S
---
V
-
D
L
V
D
-------
E
N
---
D
----
N
A
Y
------------
Q
--------------------
S
D
V
----
W
A
A
S
--
S
Y
-
D
V
E
K
GET
S
------
S
------
I
T
K
E
L
K
P
G
E
V
K
R
Q
N
-
K
V
Y
V
I
N
K
E
K
--------------------------------------------------------------------------------------------------------------------
9
HHSearch
55.12
12%
-46
- C8 -
4EAE
2
?
A:
[22-157]
------------------------------------------------------------------------------------------------
L
G
G
D
V
T
T
T
Y
L
S
S
S
-
K
S
F
Q
-------
K
D
F
E
A
L
T
L
F
I
N
Q
Y
-
K
V
E
--
H
-----------
V
I
-
N
P
------
T
K
-
E
V
S
A
S
N
P
ES
Y
L
A
N
K
N
G
Y
------
V
I
T
L
D
I
S
I
K
--------
N
N
S
K
-
K
D
K
-------
M
Y
K
A
--
D
---
Q
-
I
S
L
L
-------
G
A
---
S
----
K
S
V
------------
G
--------------------
G
S
L
----
D
N----
F
I
-
P
------
S
GF----
H
LIGSSS
D
P
Y
N
F
T
A
G
K
T
A
R
G
L
-
L
T
F
T
M
D
E
A
T
Y
N
------------------------------------------------------------------------------------------------------------------
96
Fugue
52.09
11%
-73
- C3 -
4XOH
-
MID1_SCHPO
A:
[5-324]
PL
P
L
G
R
F
Y
I
H
L
N
S
I
L
N
I
S
I
S
EVH
S
P
I
K
I
I
V
N
T
P
T
Q
N
M
Q
L
P
W
Q
A
V
N
G
-----
N
N
R
L
-
D
H
D
F
A
F
H
V
D
D
N
F
K
V
S
F
M
F
L
D
I
P
I
E
D
I
-
K
K
V
S
G
T
A
T
L
N
L
G
N
V
K
D
S
C
F
G
K
A
F
N
V
E
-
I
P
-
I
-------
I
S
R
T
L
G
N
L
T
L
T
C
L
-
Y
I
P
--
E
L
SVPEQELPFT
L
E
-
Q
A
------
T
M
-
D
L
R
H
V
R
S
--
N
Y
L
Y
N
E
G
Y
------
L
Y
R
L
E
D
S
S
I
--------
R
R
R
F
-
V
V
L
-------
R
S
K
Q
--
L
---
N
-
F
Y
A
E
-------
K
G
---
G
Q
Y
L
-
D
T
F
------------
Q
--------------------
L
S
K
----
T
-----
V
V
-
S
------
I
------
P
------
M
V
N
F
S
E
A
V
S
N
L
G
L
V
-
A
G
I
L
A
T
S
V
D
R
R
--
H
V
-
Q
L
-----------
F
A
D
----
S
K
K
V
C
Q
-----
K
-
W
L
Q
V
M
N
S
R
S
F
A
L
D
R
G
T
----------
E
K
------------------------------
L
W
L
Q
E
Y
V
N
F
M--------
16
HHSearch
51.47
17%
-20
- C8 -
2LLG
-
?
A:
[14-116]
--------------------------------------------------------------------------------------------------------------
N
R
-
T
-------
L
L
V
P
D
G
R
L
A
L
T
A
L
-
H
K
G
--
K
---------------
D
---------------------
Y
Q
G
K
P
------
M
F
Y
V
L
F
E
L
T
--------
N
T
T
E
-
K
T
Q
-------
N
I
Q
L
M
I
Q
S
--
F
M
E
V
S
Q
-------
T
V
HG
K
A
----
Q
N
L
------------
Q
--------------------
Y
A
V
LTD-
S
PF
Q
--
D
K
-
L
------
D
------
R
------
L
A
D
E
I
N
P
G
E
T
I
Q
G
A
-
Y
P
Y
E
F
I
N
E
---------------------------------------------------------------------------------------------------------------------
93
Fugue
49.79
19%
-101
- C6 -
2GNK
1
GLNK_ECOLI
A:
[1-112]
---------------
M
K
L
V
------
T
V
I
I
K
P
F
K
L
E
D
V
R
E
A
L
S
S
I
G
I
-----
Q
G
L
T
-
V
T
E
V
K
G
F
-----------------
G
--
R
L
P
K
V
K
I
D
V
A
I
A
D
D
Q
L
D
E
V
I
D
I
V
S
K
A
-
A
Y
-
T
-------
G
K
I
G
D
G
K
I
F
V
A
E
L
Q
R
V
I
--
R
-----------
I
R
-
T
G
------
E
A
--
D
E
A
A
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
48.93
22%
-9
- C8 -
4R4G
1
YCDA_BACSU
A:
[14-105]
--------------------------------------------------------------------------------------------------------------
I
A
-
Q
-------
V
K
I
K
D
V
S
Y
T
L
P
S
K
-
Y
D
K
-----------------
S
T
---------------------
S
D
D
Q
L
------
V
L
K
V
N
V
A
V
K
--------
N
T
G
K
-
D
P
L
-------
N
V
D
S
M-
D
---
F
-
T
L
Y
Q
-------
G
D
---
T
----
K
M
S
------------
D
--------------------
T
D
P
----
E
-----
D
Y
S
E
------
K
------
L
------
Q
G
S
T
I
N
A
D
K
S
V
E
G
N
-
L
F
F
V
V
D
K
G
---------------------------------------------------------------------------------------------------------------------
92
Fugue
48.08
17%
6
- C6 -
4N6C
1
?
A:
[2-183]
-----------------------------------------
G
H
H
H
H
-----
H
H
S
H
M
L
R
T
Y
E
N
------------------
K
--
E
E
L
K
A
E
I
E
K
T
F
--
E
K
Y
I
L
E
F
D
N
I
P
E
N
-
L
K
-
D
-------
K
R
A
D
E
V
D
R
T
P
A
E
N
-
L
A
Y
--
Q
-----------
V
G
-
W
T
------
N
L
-
V
L
K
W
E
E
D
--
E
R
K
G
L
Q
V
------------------------
K
T
P
S
-
D
K
F
-------
K
W
N
Q
--
L
---
G
-
E
L
Y
Q
-------
W
F
---
T
----
D
T
Y
------------
A
--------------------
H
L
S
-------------
L
------
Q
------
E
------
L
K
A
K
L
N
E
N
I
N
S
I
S
A
M
I
D
S
L
S
E
E
E
L
F
E
--
P
H
M
R
K
-----------
W
A
D
----
E
A
T
K
T
A
T
W
E
V
Y
K
-
F
I
H
V
N
T
V
A
P
F
G
T
F
R
T
K
----------
I
R
------------------------------
K
W
K
K
I
V
L
-----------
15
HHSearch
47.76
17%
-59
- C8 -
3NRF
1
?
A:
[23-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
H
F
R
------
T
Q
A
F
K
V
R
L
V
--------
N
A
A
K
-
S
E
I
-------
S
L
K
N
S
-
C
---
L
-
V
A
Q
S
-------
A
A
---
G
----
Q
S
F
------------
R
--------------------
L
D
T
-----------
V
-
D
E-----
E
------
L
------
T
A
D
T
L
K
P
G
A
S
V
E
G
D
-
A
I
F
A
S
E
D
D
A
V
-------------------------------------------------------------------------------------------------------------------
79
HHSearch
46.98
14%
-318
- C8 -
4EP8
-
URE2_ENTAE
B:
[21-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
R
V
V
V
E
--------
N
H
G
D
-
R
P
I
-------
Q
V
G
S
--
H
---
Y
-
H
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
44.68
12%
-35
- C8 -
5BXG
3
?
A:
[26-140]
--------------------------------------------------------------------------------------------------------------
G
E
-
K
-------
I
I
S
D
K
M
E
I
T
I
N
N
I
-
E
F
S
--
Y
-----------
D
V
L
P
K
------
V
K
E
S
L
Y
T
H
Y
----
P
A
E
S
G
K
V
------
Y
I
D
I
A
A
D
I
K
--------
N
T
Q
K
-
Q
E
L
-------
N
C
S
D
L
L
T
---
I
-
E
A
N
Y
-------
N
D
---
G
----
Y
K
Y
------------
S
--------------------
S
Q
T
----
I
-----
V
E
-
D
------
E
TTGFTY
D
------
N
I
S
S
I
D
P
L
E
T
K
G
V
R
-
F
I
I
D
C
P
D
E
V
K
-------------------------------------------------------------------------------------------------------------------
97
Fugue
40.78
9%
-22
- C1 -
1BO1
-
PI42B_HUMAN
A:
[34-416]
-----K
L
F
R
A
S
E
P
I
L
S
V
L
M
------
W
G
V
N
H
T
I
N
E
L
S
N
V
P
V
P
V
M
L
M
P
-----
D
D
F
K
-
A
Y
S
K
I
K
V
D
N
H
L
F
N
K
E
N
L
P
S
R
F
K
F
K
E
Y
C
P
M
V
F
R
N
L
R
E
R
F
G
I
D
D
Q
D
Y
Q
N
S
V
T
R
S
A
-
P
I
-
N
S
DSQT
R
F
L
T
T
Y
D
R
R
F
V
I
K
T
V
-
S
S
E
--
D
-----------
V
A
-
E
M
------
H
N
-
I
L
K
K
Y
H
Q
--
F
I
V
E
C
H
G
N
TLLPQF
L
G
M
Y
R
L
T
V
D
--------
G
V
E
T
-
Y
M
V
-------
V
T
R
N
--
V
---
F
-
S
H
R
L
-------
T
V
---
H
----
R
K
Y
------------
D
L
KGSTVAREASDKEKAKDLP
T
F
K
----
D
-----
N
D
-
F
------
L
------
N
------
E
G
Q
K
L
H
V
G
E
E
S
K
K
N
-
F
L
E
K
L
K
R
D
V
E
F
--
L
A
-
Q
L
KIMD
Y
S
L
L
V
G
I
H
D
V
----
D
R
A
E
Q
E
E
M
---
E
-
V
E
E
R
A
E
D
E
E
F
D
P
S
V
D
V
----------
Y
A
MK
S
H
E
S
SPK
K
E
V
Y
F
M
A
I
I
DILTAGAEI
S
T
V
N
P
E
Q
Y
S
K
R
F
N
E
F
M
S
N
ILT
13
HHSearch
39.76
13%
-58
- C8 -
3QFG
-
?
A:
[62-166]
---------------------------------------------------------------------------------------------------------------
D
-
T
-------
I
V
S
D
K
F
E
A
K
I
K
E
P
-
F
I
I
--
N
-----------
E
K
------------------------
D
E
K
K
K
------
Y
I
A
F
K
M
E
I
T
--------
A
K
K
D
D
K
D
L
-------
N
P
S
S
I
-
S
H
D
Y
I
-
N
I
T
Q
-------
D
----
D
KNTV
N
K
L
------------
R
--------------------
D
G
Y
LLSD
K
KYK--
D
W
-
T
------
E
------
H
------
N
Q
D
Q
I
K
K
G
K
T
A
Q
A
M
-
F
I
Y
E
L
R
G
D
---------------------------------------------------------------------------------------------------------------------
91
Fugue
38.97
8%
0
- C4 -
2JRA
-
?
A:
[1-67]
-----------------------------
M
M
T
A
S
D
R
L
G
A
D
P
T
Q
A
A
S
-----
S
P
G
G
-
A
R
A
V
S
I
V
G
N
Q
I
D
S
R
E
L
F
T
V
D
R
E
I
V
I
--
A
H
G
D
D
R
Y
R
L
R
L
T
S
Q
N
K
L
I
L
T
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
80
HHSearch
37.99
17%
-49
* C8 *
1SO9
-
COXZ_RHIME
A:
[60-142]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
E
------
T
V
Q
I
M
Y
R
A
K
--------
N
L
A
S
-
T
P
T
-------
T
G
Q
A
--
T
---
F
-
N
V
T
P
-------
M
A
---
A
----
G
------------------------------------------------
A
Y
-
F
NKV---
Q
CFC---
F
------
T
E
T
T
L
E
P
G
E
E
M
E
M
P
-
V
V
F
F
V
D
P
E
I
V
K
--------------------------
P
V
E
T
Q
G
I
---
K
-
T
L
T
L
S
Y
----------------------------------------------------------------------