@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu06090: (2016-06-09 )
MTFIKRLEDAYETLLGNYPAGVSSTSTSKYNEIRKIVSEAFLIGENEVYVTGTSRRISNLDTRFAQGNQRNKHTRMAVAFISIPSVDDSELDELIIRTRNSAITTSSKFCNGEERGTIFDGILLFLVFEGETKVYPLAFLVFENDFELKEKAEELIPGIELKEYPRANQSPAQENNKSAKNEDEESAKSYVVFLDIEEDGSIVEFVEDKDKTYRIGDMIWTASHTNGSSAITRRLEVIEVVENLVVCKIKHKYNEPVDKNSLLKFVNIEQDLISFLDLHPNVQNGSEGFVSGDIVDENATTSSDDLPEDFENN
Atome Classification :
(20 SA)
--.........10........20........30........40....--....50...--.....60--.........70........----80........90........100.......110..--.....120.....------..130---........------.140---------.--....-------..150....----.--..160...----------------.....-170.......180-.------...-----..----..190-------.......200.......210-....-..--------.220.......230...---....240.......250.......260.......270.......280.......290....---------...300.......310.--------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--
M
T
F
I
K
R
L
E
D
A
Y
E
T
L
L
GNYPAGVSSTST
S
K
Y
N
E
I
R
K
I
V
S
E
A
F
L
IGE--N
E
V
Y
V
TGTS--R
R
I
S
NL---
D
T
R
FAQGNQRNK
H
T
R
M
A
V
A
----
F
I
SIPSV
D
D
S
E
L
D
E
L
I
I
RTRNSAITTSSKFCNGEE--R
G
T
I
F
D
G
I
L
L
F
L
V
------FEG-----ET
K
V
Y
P
L
A
------
F
L
V
F---------E--ND
F
E
-------
L
K
E
K
A
E
E
LI----P--GIEL-KEY----------------PRANQ-SPAQENNKSAKN--E------
D
E
E
-----SA----K
S
Y
V
V
-------
F
L
D
IEEDG
S
I
V
E
F
VEDKDK
T
-
Y
R
I
G
-
D
M
--------
I
W
T
ASHTN
G
S
S
A
I
T
R
R
L
---
E
V
I
E
V
V
E
N
L
V
V
C
K
I
K
HKYNEPV
D
K
N
S
L
L
K
F
VNI
E
Q
D
L
I
S
F
L
DLHPNVQNGSEGFVSGDIVD---------ENATTSSDDLPEDFENN--------------------------------------
24
Fugue
82.27
15%
-85
- C4 -
4A9A
-
RBG1_YEAST
B:
[2-369]
--
S
T
T
V
E
K
I
K
A
I
E
D
E
M
A
R
--------
T
Q
K
N
K
A
T
S
F
H
L
G
Q
L
K
A
K
L
A
K
L
--
R
R
E
L
L
T
S
A
S
--
S
G
S
G
G
G
---
A
---
G
I
G
F
D
V
A
R
T
G
V
A
S
V
G
----
F
V
G
F
P
S
V
G
K
S
T
L
L
S
K
L
T
G
T
-
E
S
E
T
T
L
V
T
V
P
G
V
I
R
Y
--
K
G
A
K
I
Q
M
L
D
L
P
G
I
------
I
D
G
-----
G
K
Q
V
I
A
V
A
R
T
CN
L
L
F
I
I
L
---------
D
VN
K
P
L
H
-------
H
K
Q
I
I
E
K
E
L
----
E
G
V
G
I
R
L
N
K
T
P
----------------
P
D
I
L
I
-
K
K
K
E
K
G
G
I
S
I
T
N
--
T
V
PLTHL
G
N
D
-----
E
I
----
R
A
V
M
S
E
Y
RIN
S
A
E
I
A
F
R
C
D
A
T
V
D
D
L
I
D
V
L
E
A
S
-
S
R
R
Y
M
P
A
--------
I
Y
V
L
N
K
I
D
S
L
S
--
I
E
E
L
---
E
L
L
Y
R
I
P
N
A
V
P
I
S
S
G
Q
D
W
N
L
D
E
L
L
Q
V
M
W
D
R
L
N
-------
L
V
R
I
Y
T
K
P
K
G
Q
I
P
D
F
T
D
P
V
V
L
R
---------
S
D
R
C
S
V
K
D
F
C
N
Q
I
H
K
S
L
VDDFR
N
A
L
V
Y
GSSVKHQ
P
Q
Y
V
G
LS
H
I
L
E
DE
D
V
V
T
I
L
KK
30
Fugue
69.29
11%
-44
- C3 -
1RRQ
4
MUTY_GEOSE
A:
[12-362]
P
A
R
E
F
Q
R
D
L
L
D
W
F
A
R
E
R
R
D
L
P
W
R
K
D
R
------
D
P
Y
K
V
W
V
S
E
V
M
L
Q
Q
T
--
R
V
E
T
V
I
P
Y
F
--
E
Q
F
I
D
R
---
F
P
T
L
E
A
L
A
D
A
D
E
D
E
V
L
K
A
W
EGLG
Y
Y
S
R
V
R
N
L
H
A
A
V
K
E
V
K
T
R
Y
G
G
K
V
P
D
D
P
D
E
F
S
R
L
K
G
--
V
G
P
Y
T
V
G
A
V
L
S
L
A
------
Y
G
V
P
E
P
A
V
N
G
N
V
M
R
V
L
------
S
R
L
F
LVTDDIAKC
S
--
T
R
K
R
-------
F
E
Q
I
V
R
E
I
M
----
A
--
Y
E
N
P
-
G
A
F
N
E
A
L
I
E
L
G
A
LVCTPRR
P
S
C
L
L
-
C
P
V
Q
A
Y
C
Q
A
F
A
E
--
G
------
V
A
E
ELPVK
M
V
----
K
Q
V
P
L
-------
A
V
A
V
L
A
D
D
E
G
R
V
L
I
R
K
R
D
S
T
-
G
L
L
A
-
N
L
--------
W
E
F
P
S
C
E
T
D
G
A
D
G
K
E
K
L
---
E
Q
M
V
G
L
Q
V
E
L
T
E
P
I
V
S
F
E
H
A
F
S
H
L
V
W
Q
L
T
V
F
P
G
R
L
V
H
------
G
G
P
V
E
E
P
Y
R
L
A
P
E
D
E
L
K
A
---------
Y
A
F
P
V
S
H
Q
R
V
W
R
E
Y
K
E
W
A
-------------------------------------
27
Fugue
59.25
15%
-75
* C6 *
4NTC
1
?
A:
[2-326]
--
M
S
I
G
K
L
L
S
N
G
-
A
L
L
V
D
V
L
I
I
G
A
G
P
A
G
L
S
T
A
T
G
L
A
R
Q
L
H
T
A
V
V
F
D
S
--
G
-
V
Y
R
N
A
K
T
--
Q
H
M
H
N
V
LGW
D
H
R
N
P
A
E
L
R
A
A
G
R
A
D
L
T
T
R
----
Y
S
T
I
Q
F
Q
N
-
S
T
I
E
A
I
R
Q
V
E
T
N
Q
L
F
E
A
R
D
N
--------
E
G
H
S
W
Y
G
R
K
V
V
L
A
T
G
----
V
R
D
-----
I
P
L
D
I
E
G
Y
------
S
E
C
W
---------
A
--
N
G
I
Y
HCLFCDG
Y
E
E
R
G
Q
E
T
V
----
G
--
V
L
A
L
-
G
------------------
P
I
A
N
P
-
A
R
A
L
H
L
A
R
M
A
L
R
--
L
---------------
S
----
E
S
V
T
I
-------
Y
T
N
--
G
N
E
Q
L
A
K
E
I
Q
Q
A
A
E
E
-
S
P
V
G
-
A
S
G
L
K
F
E
ARP
I
R
R
F
E
K
G
D
V
A
K
T
V
I
V
H
L
G
--
E
S
E
S
K
T
E
G
F
L
V
Y
N
P
Q
T
E
V
N
G
P
F
A
K
Q
L
A
L
N
M
T
E
-
G
G
D
I
L
T
T
P
P
F
Y
E
T
S
V
P
G
--
V
F
A
V
G
D
C
A
T
PLKA
V
T
P
A
V
S
M
G
S
L
A
A
G
G
L
V
A
Q
L
Q
A
Q
AL------------------------------------
16
HHSearch
55.29
22%
-122
- C4 -
4MJ7
1
UTP23_YEAST
A:
[88-143]
-------------------------------------------------------------------------------------------------------------------------
R
C
N
H
S
F
KD
P
K
S
P
A
E
C
I
E
-
S
V
V
------
N
I
S
-----
G
A
N
--
K
H
R
------
Y
V
V
A
---------
S
--
Q
D
I
D
-------
L
R
R
K
L
R
T
-
V
----
P
--
G
V
P
L
-
I
H
L
----------------
T
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
53.15
27%
-64
- C4 -
3K4E
1
PUF3_YEAST
A:
[199-293]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
E
------
D
Q
E
-----
S
I
L
N
E
L
K
D
F
I
P
-------
Y
L
-----------
I
Q
D
Q
Y
G
N
-
Y
V
I
Q
-
Y
V
--------
L
Q
Q
D
Q
F
T
N
-
K
E
M
V
D
I
K
Q
---
E
I
I
E
T
V
A
N
N
V
V
E
Y
S
K
H
K
F
A
S
N
V
V
E
K
S
I
L
Y
G
S
K
N
Q
K
D
L
I
---------------------------------------------------------------------------------------
8
PsiBlast_PDB
52.72
32%
-81
- C5 -
4JWH
1
TRM10_SCHPO
A:
[162-219]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
Q
Q
-
N
N
W
K
R
Y
N
P
T
T
K
S
Y
L
E
------
E
F
E
-----
S
Q
----
K
E
K
L
V
-------
Y
L
S
A
D
S
D
N
T
I
T
E
L
--
D
E
D
K
I
-
Y
I
I
G
-
A
I
--------
V
------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
52.56
27%
-67
- C4 -
3K49
1
PUF3_YEAST
A:
[199-285]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
E
------
D
Q
E
-----
S
I
L
N
E
L
K
D
F
I
P
-------
Y
L
-----------
I
Q
D
Q
Y
G
N
-
Y
V
I
Q
-
Y
V
--------
L
Q
Q
D
Q
F
T
N
-
K
E
M
V
D
I
K
Q
---
E
I
I
E
T
V
A
N
N
V
V
E
Y
S
K
H
K
F
A
S
N
V
V
E
K
S
I
L
Y
G
S
K
N
Q
K
D
L
I
---------------------------------------------------------------------------------------
25
Fugue
51.86
10%
-33
- C4 -
1J3G
1
AMPD_CITFR
A:
[1-187]
----------------------------------------------------------------------------------------------------------------------------------
M
L
L
D
E
G
W
L
A
E
A
R
R
V
P
S
P
H
Y
D
C
-----
R
P
D
D
E
N
P
S
------
L
L
V
V
---------
H
--
N
I
----------
S
L
P
P
--
G
E
----
F
--
G
G
P
W
-
I
D
A
----------------
L
F
T
G
T
-
I
D
P
N
A
H
P
Y
F
A
G
I
--
A
------
H
L
R
-----
V
S
----
A
H
C
L
I
-------
R
----
R
D
G
E
I
V
Q
Y
V
P
F
D
K
R
A
-
W
H
A
G
-
V
S
--------
S
Y
Q
G
R
E
R
C
N
D
F
S
I
G
I
E
L
E
G
T
D
------
T
L
A
Y
T
D
A
Q
Y
Q
Q
L
A
A
V
T
N
A
L
I
T
R
Y
P
A
I
A
N
N
M
T
G
H
C
N
I
A
P
E
R
K
T
D
P
G
P
S
F
D
W
A
R
F
R
---------
A
L
---
V
T
P
S
S
H
K
E
M
T
----------------------------------------
7
PsiBlast_PDB
49.92
32%
-46
- C5 -
4JWG
1
TRM10_SCHPO
A:
[89-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
Q
Q
-
N
N
W
K
R
Y
N
P
T
T
K
S
Y
L
E
------
E
F
E
-----
S
Q
----
K
E
K
L
V
-------
Y
L
S
A
D
S
D
N
T
I
T
E
L
--
D
E
D
K
I
-
Y
I
I
G
-
A
I
--------
V
------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
49.61
32%
-55
* C5 *
4JWF
1
TRM10_SCHPO
A:
[89-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
Q
Q
-
N
N
W
K
R
Y
N
P
T
T
K
S
Y
L
E
------
E
F
E
-----
S
Q
----
K
E
K
L
V
-------
Y
L
S
A
D
S
D
N
T
I
T
E
L
--
D
E
D
K
I
-
Y
I
I
G
-
A
I
--------
V
------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
49.38
20%
-38
- C6 -
2MN4
-
?
A:
[1-94]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
P
---------
E
--
Q
R
E
F
-------
L
P
E
I
L
A
E
I
I
A
N
LD
P
--
T
K
I
L
-
E
E
L
----------------
L
R
R
G
L
L
T
P
A
E
L
Q
E
V
L
D
L
K
--
T
------
P
E
E
-----
Q
A
----
K
K
L
I
D
-------
F
I
L
K
L
S
P
A
D
V
Q
A
R
I
N
V
L
R
A
H
G
Y
Q
A
L
-
A
D
--------
K
L
N
K
Y
L
T
L
E
----------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
47.41
31%
-1
- C4 -
1GXF
2
TYTR_TRYCR
A:
[316-385]
-----------------------------------
R
T
N
V
S
N
I
Y
A
I
G
D
VT
N
R
V
M
L
T
P
V
A
I
N
E
A
A
A
L
V
---
D
T
V
F
G
T
T
P
R
K
T
D
H
T
R
V
A
S
A
----
V
F
S
I
P
P
I
G
T
C
G
L
I
E
E
V
A
S
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
46.81
31%
7
- C4 -
1BZL
2
TYTR_TRYCR
A:
[315-384]
-----------------------------------
R
T
N
V
S
N
I
Y
A
I
G
D
VT
N
R
V
M
L
T
P
V
A
I
N
E
A
A
A
L
V
---
D
T
V
F
G
T
T
P
R
K
T
D
H
T
R
V
A
S
A
----
V
F
S
I
P
P
I
G
T
C
G
L
I
E
E
V
A
S
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
46.62
31%
4
- C4 -
1AOG
1
TYTR_TRYCR
A:
[314-383]
-----------------------------------
R
T
N
V
S
N
I
Y
A
I
G
D
VT
N
R
V
M
L
T
P
V
A
I
N
E
A
A
A
L
V
---
D
T
V
F
G
T
T
P
R
K
T
D
H
T
R
V
A
S
A
----
V
F
S
I
P
P
I
G
T
C
G
L
I
E
E
V
A
S
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_CBE
46.52
31%
-7
- C4 -
1NDA
1
TYTR_TRYCR
C:
[315-384]
-----------------------------------
R
T
N
V
S
N
I
Y
A
I
G
D
VT
N
R
V
M
L
T
P
V
A
IN
E
A
A
A
L
V
---
D
T
V
F
G
T
N
P
R
K
T
D
H
T
R
V
A
S
A
----
V
F
S
I
P
P
I
G
T
C
G
L
I
E
E
V
A
S
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
46.33
31%
-9
- C4 -
4NEW
1
?
A:
[316-385]
-----------------------------------
R
T
N
V
S
N
I
Y
A
I
G
D
VT
N
R
V
M
L
T
P
V
A
I
N
E
A
A
A
L
V
---
D
T
V
F
G
T
T
P
R
K
T
D
H
T
R
V
A
S
A
----
V
F
S
I
P
P
I
G
T
C
G
L
I
E
E
V
A
S
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
45.87
31%
-7
- C4 -
1NDA
1
TYTR_TRYCR
A:
[315-384]
-----------------------------------
R
T
N
V
S
N
I
Y
A
I
G
D
VT
N
R
V
M
L
T
P
V
A
I
N
E
A
A
A
L
V
---
D
T
V
F
G
T
N
P
R
K
T
D
H
T
R
V
A
S
A
----
V
F
S
I
P
P
I
G
T
C
G
L
I
E
E
V
A
S
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_CBE
45.81
31%
-7
- C4 -
1NDA
1
TYTR_TRYCR
B:
[315-384]
-----------------------------------
R
T
N
V
S
N
I
Y
A
I
G
D
VT
N
R
V
M
L
T
P
V
A
IN
E
A
A
A
L
V
---
D
T
V
F
G
T
N
P
R
K
T
D
H
T
R
V
A
S
A
----
V
F
S
I
P
P
I
G
T
C
G
L
I
E
E
V
A
S
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_CBE
45.13
31%
-7
- C4 -
1NDA
1
TYTR_TRYCR
D:
[315-384]
-----------------------------------
R
T
N
V
S
N
I
Y
A
I
G
D
VT
N
R
V
M
L
T
P
V
A
IN
E
A
A
A
L
V
---
D
T
V
F
G
T
N
P
R
K
T
D
H
T
R
V
A
S
A
----
V
F
S
I
P
P
I
G
T
C
G
L
I
E
E
V
A
S
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
43.87
18%
-46
- C4 -
2M7B
-
?
A:
[46-83]
-------
D
I
S
E
A
E
E
L
A
R
E
K
F
E
K
G
E
V
S
N
-
F
D
D
V
E
E
L
V
K
K
V
V
A
V
C
E
E
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------