@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu06130: (2016-06-09 )
MVSIFYANRLSYSIWNTIPGKYIREELEQNGVTYNELIKYWDITDPSQALPKVNKDNVLLISAKHDQYIDLKDADYLWESWGRPTRYVYNCGHSGIVLCRKKLANDTLSFIREKLV
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.........------20..-----....--..---30........40........50....-.....60........-70...----.-.---.--..80..---.--.....--90.-...-.....----100.......110....-
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
I
F
Y
ANRL-
S
Y
S
I
W
NTI
P
------
G
K
Y
I
-----
R
E
E
L
--
E
Q---NGV
T
Y
N
E
L
I
K
YWDIT
D
P
S
Q
AL-PKVN-KD
N
V
L
L
I
SAKHD
Q
Y
I-DLK
D
A
----
D
-
Y
---
L
--
W
E
SWGR---
P
--
T
R
Y
V
Y
--N-C-GH
S
-
G
I
V
L
C
----
R
K
K
LA
N
D
T
L
S
F
I
R
E
KLV-
1
PsiBlast_PDB
80.04
25%
-116
- C2 -
4Z8Z
-
?
A:
[219-319]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
W
D
N
P
L
------
L
V
K
V
-----
K
K
D
L
--
E
D
---
S
G
V
G
K
E
Q
V
M
D
V
F
R
I
I
D
P
C
E
N
I
N
T
R
F
N
-
T
D
N
I
A
V
V
Y
S
I
Y
D
Q
I
V
G
E
E
K
N
A
----
I
-
F
---
V
E
K
I
K
K
A
G
L
---
K
--
K
I
L
E
Y
--
H
-
A
-
G
H
L
-
N
I
-
L
R
----
V
P
K
L
S
N
D
I
Y
E
F
F
------
25
HHSearch
72.81
21%
-78
- C2 -
4Z8Z
-
?
A:
[213-323]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
M
-
L
L
L
V
W
D
N
P
L
------
L
V
K
V
-----
K
K
D
L
--
E
D
---
S
G
V
G
K
E
Q
V
M
D
V
F
R
I
I
D
P
C
E
N
I
-
N
T
R
F
N
T
D
N
I
A
V
V
Y
S
I
Y
D
Q
I
V
-
G
E
E
K
N
----
A
-
I
---
F
--
V
E
K
I
K
K
---
A
GL
K
K
I
L
E
--
Y
H
A
-
G
H
L
-
N
I
L
-
R
----
V
P
K
L
S
N
D
I
Y
E
F
F
M
S
C
L
--
21
Fugue
66.74
14%
-93
- C2 -
1VE6
2
APEH_AERPE
A:
[8-581]
EF
S
R
I
V
R
D
V
E
R
L
I
A
V
E
K
Y
S
L
QGVVDG
D
K
L
L
V
V
G
FSEG
S
V
N
A
Y
L
Y
D
G
G
E
T
V
K
LNREPINSVLDPHYGVG
R
V
I
L
V
R
D
VSKGAEQ
H
A
L
F
K
V
NTSRPG
E
E
Q
R
LEAVKPMRIL
S
G
V
D
TGE
A
V
V
F
T
G
A
T
ED
R
V
A
L
Y
A
L
D
GGGLRELARLP
G
F
G
F
V
SDIRGD
L
I
A
G
L
G
FFGGG
R
V
S
L
F
T
S
N
LS
S
G
G
L
R
V
F
D
S
GE
G
S
F
S
S
A
S
I
S
PGM
K
V
T
A
G
L
E
T
A
R
E
A
R
L
V
T
V
D
PRDG
S
V
E
D
L
E
L
PSK
D
F
S
S
Y
RPTAIT
W
L
G
Y
L
PDG
R
L
A
V
V
A
R
R
EG
R
S
A
V
F
I
DG
E
R
V
E
A
P
Q
GNH
G
R
V
V
L
W
RG
K
L
V
T
S
H
T
S
LST
P
P
R
I
V
S
L
PSGEPL
L
E
G
G
L
P
E
D
L
R
R
S
I
A
G
S
R
L
V
W
V
E
S
FDGSRVP
T
Y
V
L
E
S
GRAPTPG
P
T
V
V
L
V
H
G
GPFAEDSDSWD
T
F
A
A
S
L
A
A
A
G
F
H
V
V
M
P
NYRGSTGYG
E
E
W
R
L
KIIGDPCG
G
E
L
E
D
V
S
A
A
A
R
W
A
R
E
S
GLAS
E
L
Y
I
M
G
Y
S
Y
G
G
Y
M
T
L
C
A
L
T
MKPGLF
K
A
G
V
A
G
A
S
V
V
-
D
W
E
E
M
Y
E
L
S
------
D
A
A
F
-----
R
N
F
I
--
E
Q
---
L
T
G
G
S
R
E
I
M
R
S
R
S
P
I
N
H
V
D
R
I
------
K
E
P
L
A
L
I
H
P
Q
N
D
S
R
T
-
P
L
K
P
L
----
L
-
R
---
L
--
M
G
E
L
L
A
R
G
K
T
--
F
E
A
H
I
I
P
D
-
A
-
G
H
A
I
N
T
M
E
D
----
A
V
K
I
L
L
P
A
V
F
F
L
A
T
Q
R
E
R
14
PsiBlast_PDB
61.50
32%
-165
- C4 -
1GAW
-
?
A:
[240-291]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
E
R
M
Y
I
-
Q
T
R
M
A
----
E
-
Y
K
E
E
L
--
W
E
L
L
K
K
---
D
--
N
T
Y
V
Y
--
M
-
C
-
G
L
K
-
G
M
--------
E
K
G
I
D
D
I
M
V
S
L
A
E
K
---
44
HHSearch
60.14
20%
-146
- C2 -
2VAT
1
CEFG_ACRCH
A:
[381-441]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
P
A
L
I
I
C
A
R
S
D
G
L
Y
-
S
F
D
E
H
----
V
-
E
---
M
--
G
R
S
I
P
N
---
S
--
R
L
C
V
V
--
D
T
N
E
G
H
D
-
F
F
V
M
E
----
A
D
K
V
N
D
A
V
R
G
F
L
D
Q
----
11
PsiBlast_PDB
60.13
32%
-170
* C4 *
3W5U
-
?
A:
[240-291]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
E
R
M
Y
I
-
Q
T
R
M
A
----
E
-
Y
K
E
E
L
--
W
E
L
L
K
K
---
D
--
N
T
Y
V
Y
--
M
-
C
-
G
L
K
-
G
M
--------
E
K
G
I
D
D
I
M
V
S
L
A
E
K
---
22
Fugue
59.02
22%
-82
- C1 -
4F8L
30
PSAA_YERPE
A:
[2-139]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NT
F
H
V
D
F
A
P
NT
G
E
I
F
A
G
KQPGDVT
M
F
T
L
T
M
G
D
T
A
-
P
H
G
G
W
R
L
I
P
T
GDSKG
G
Y
M
I
S
ADG
D
Y
V
G
L
--
Y
S
---
Y
M
M
S
W
V
G
I
D
N
N
W
Y
I
N
D
D
S
P
K
-----
D
-
I
K
D
H
L
Y
V
K
A
G
T
-----
V
L
K
P
T
----
T
-
Y
---
K
--
F
T
--
G
R
---
V
--
E
E
Y
V
F
--
D
-
N
-
K
Q
S
-
T
V
I
N
S
----
K
D
V
S
G
E
V
T
V
K
Q
G
L
E
----
12
PsiBlast_PDB
58.68
32%
-131
- C4 -
3W5V
-
?
A:
[240-291]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
E
R
M
Y
I
-
Q
T
R
M
A
----
E
-
Y
K
E
E
L
--
W
E
L
L
K
K
---
D
--
N
T
Y
V
Y
--
M
-
C
-
G
L
K
-
G
M
--------
E
K
G
I
D
D
I
M
V
S
L
A
E
K
---
42
HHSearch
57.97
23%
-95
* C2 *
1J1I
-
?
A:
[222-282]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
P
T
L
V
V
Q
G
K
D
D
K
V
V
-
P
V
E
T
A
----
Y
-
K
---
F
--
L
D
L
I
D
D
---
S
--
W
G
Y
I
I
--
P
H
C
-
G
H
W
-
A
M
I
E
H
----
P
E
D
F
A
N
A
T
L
S
F
L
S
L
R
---
16
Fugue
57.04
11%
-97
- C2 -
1M33
3
BIOH_ECOLI
A:
[3-258]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
I
W
W
Q
T
K
G
QGN
V
H
L
V
L
L
H
G
W
GLNAEVWRCI
D
E
E
L
S
S
H
FT
L
H
L
V
DLPGFGRSRGFGALS
L
A
D
M
A
E
A
V
L
Q
Q
APDKAI
W
L
G
W
S
L
G
G
L
V
A
S
Q
I
A
L
T
HPERVR
A
L
V
T
V
ASSPCF
S
A
R
DEWPGIK
P
D
V
L
A
G
F
Q
Q
Q
L
S
D
D
Q
Q
R
T
V
E
R
F
L
A
L
Q
T
M
G
T
E
T
A
R
Q
D
A
------
R
A
L
K
-----
K
T
V
L
--
A
L
PMP
E
V
D
V
L
N
G
G
L
E
I
L
K
T
V
D
L
R
Q
P
L
-
Q
N
V
S
M
P
--
F
L
R
L
Y
G
Y
L
D
G
L
V
-
P
R
K
V
V
----
P
M
L
---
D
--
K
L
W
P
H
S
---
E
--
S
Y
I
F
A
--
K
-
A
-
A
H
A
-
P
F
I
S
H
----
P
A
E
F
C
H
L
L
V
A
L
K
Q
R
V
G
S
-
13
PsiBlast_PDB
56.93
32%
-129
- C4 -
1GAQ
-
?
A:
[240-291]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
E
R
M
Y
I
-
Q
T
R
M
A
----
E
-
Y
K
E
E
L
--
W
E
L
L
K
K
---
D
--
N
T
Y
V
Y
--
M
-
C
-
G
L
K
-
G
M
--------
E
K
G
I
D
D
I
M
V
S
L
A
E
K
---
29
HHSearch
56.62
23%
-101
- C2 -
1IUP
2
?
A:
[213-273]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
E
T
L
I
I
H
G
R
E
D
Q
V
V
-
P
L
S
S
S
----
L
-
R
---
L
--
G
E
L
I
D
R
---
A
--
Q
L
H
V
F
--
G
R
C
-
G
H
W
-
T
Q
I
E
Q
----
T
D
R
F
N
R
L
V
V
E
F
F
N
E
A
---
37
HHSearch
52.72
19%
-104
- C2 -
4LXH
1
?
A:
[216-275]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
P
V
L
V
L
G
G
K
N
D
V
M
V
-
P
V
R
K
V
----
I
-
D
---
Q
--
I
L
A
I
P
Q
---
A
--
I
G
H
V
F
--
P
N
C
-
G
H
W
-
V
M
I
E
Y
----
P
E
E
F
C
T
Q
T
L
H
F
F
G
K
----
38
HHSearch
52.61
19%
-114
- C2 -
1C4X
-
?
A:
[224-283]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
H
D
V
L
V
F
H
G
R
Q
D
R
I
V
-
P
L
D
T
S
----
L
-
Y
---
L
--
T
K
H
L
K
H
---
A
--
E
L
V
V
L
--
D
R
C
-
G
H
W
-
A
Q
L
E
R
----
W
D
A
M
G
P
M
L
M
E
H
F
R
A
----
28
HHSearch
51.69
15%
-110
- C2 -
3OM8
-
?
A:
[207-265]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
E
R
P
T
L
V
I
A
G
A
Y
D
T
V
T
-
A
A
S
H
G
----
E
-
L
---
I
--
A
A
S
I
A
G
---
A
--
R
L
V
T
L
--
P
-
A
-
V
H
L
-
S
N
V
E
F
----
P
Q
A
F
E
G
A
V
L
S
F
L
G
-----
19
Fugue
51.68
13%
-65
- C2 -
4KEA
6
MGLP_BAC25
A:
[22-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEQYPVLSGA
E
P
F
Y
A
E
N
G
P
V
G
V
L
L
V
H
GFTGTPHSM
R
P
L
A
E
A
Y
A
K
A
GYT
V
C
L
P
R
L
KGHGTH
Y
E
D
M
E
R
TT
F
H
D
W
V
A
S
V
E
E
G
Y
G
W
L
K
Q
R
CQ
T
I
F
V
T
G
L
S
M
G
G
T
L
T
L
Y
L
A
E
H
HPDIC
G
I
V
P
I
NAAVDI
P
A
I
A
A
G
M
T
G
G
G
E
L
P
R
Y
-
L
D
S
I
G
S
D
L
K
------
N
P
D
V
-----
K
E
L
A
YE
K
T
---
P
T
A
S
L
L
Q
L
A
R
L
M
A
Q
T
K
--
A
K
L
-
D
R
I
V
-
C
P
-
A
L
I
F
V
S
D
E
N
H
V
V
-
P
P
G
N
A
----
D
-
I
---
I
--
F
Q
G
I
S
S
---
T
--
E
K
E
I
V
--
R
-
L
-
R
N
S
-
Y
H
V
A
T
LDYD
Q
P
M
I
I
E
R
S
L
E
F
F
A
K
H
A
--
24
Fugue
51.25
25%
-68
- C2 -
2MN4
-
?
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
P
E
Q
R
E
F
L
P
E
I
L
-
A
E
I
I
A
N
L
D
P
------
T
K
I
L
-----
E
E
L
L
--
R
R
---
G
L
L
T
P
A
E
L
Q
E
V
L
D
L
K
T
P
E
E
Q
A
-
K
K
L
I
-
D
F
I
L
K
L
S
P
A
D
V
Q
A
R
I
-
N
V
L
R
A
-------------------------------------
H
G
-
Y
Q
A
L
A
----
D
K
L
N
K
Y
L
T
L
E
--------
3
PsiBlast_PDB
50.49
29%
-105
- C2 -
1J1I
-
?
A:
[226-279]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
Q
G
K
D
D
K
V
V
-
P
V
E
T
A
Y
K
F
L
D
-
L
---
I
--
D
D
S
W
G
Y
--------
I
I
P
--
H
-
C
-
G
H
W
-
A
M
I
E
H
----
P
E
D
F
A
N
A
T
L
S
F
L
------
30
HHSearch
48.97
15%
-86
- C2 -
2PUJ
1
BPHD_BURXL
A:
[225-285]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
K
A
K
T
F
I
T
W
G
R
D
D
R
F
V
-
P
L
D
H
G
----
L
-
K
---
L
--
L
W
N
I
D
D
---
A
--
R
L
H
V
F
--
S
K
C
-
G
A
W
-
A
Q
W
E
H
----
A
D
E
F
N
R
L
V
I
D
F
L
R
H
----
26
HHSearch
47.34
17%
-70
- C2 -
2XUA
-
?
A:
[206-264]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
P
A
L
V
I
S
G
T
H
D
L
A
A
-
T
P
A
Q
G
----
R
-
E
---
L
--
A
Q
A
I
A
G
---
A
--
R
Y
V
E
L
--
D
-
A
-
S
H
I
-
S
N
I
E
R
----
A
D
A
F
T
K
T
V
V
D
F
L
T
E
----