@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu06559: (2016-06-10 )
MKPNISLINAVFRIACGLTIMSAASAKFTKKPWCRMHLFYIFMGAMKAGSGILRFCPVTYMFQHSDSGNNEHQNG
Atome Classification :
(18 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-...---...10.....--...20--------.....---....30..----....----.------.40--..--..----------...--..50.-....-....60........70....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKP-
N
I
S
---
L
I
N
A
V
F
R
I
A
C--GL
T
I
---------MSAAS---AKFTKKP
W
----
C
R
M
H
----
L
------
F
Y
---
I
F
--
M
G
----------
A
M
K
--AGS-G-
I
L
R
F-CP
V
T
Y
M
F
QHSDSGNNEHQNG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
67.69
17%
-129
- C3 -
4RU0
4
?
A:
[30-444]
GPD
Q
Q
F
F
P
L
ATYRVGAY
A
S
S
G
V
Q
V
W
A
G
M
I
D
Y
L
N
Y
I
N
QVEGGING
V
K
L
V
W
Q
E
C
E
TEWT
A
E
K
G
I
E
C
Y
E
R
F
K
NGLDGAPVAVYQPNG
A
P
A
A
Y
A
L
S
E
R
A
E
V
D
K
I
P
L
I
T
L
GYGRTEATDGTVFPYNFPVMLT
F
Y
S
E
A
S
T
L
V
N
Y
I
A
Q
R
E
GGFDRLKG
K
K
I
A
T
L
Y
HDSAYGRET
L
G
P
L
K
L
L
A
E
K
YG
F
E
N
I
Q
I
P
V
A
D
PGNEQ
S
A
Q
W
R
Q
I
R
Q
Q
NPDWVFLRTWG
V
S
T
P
V
A
V
K
T
A
A
R
F
GFPVDH
I
I
G
D
IWASSSEDVLPAGAAAKG
Y
L
A
L
T
P
Y
P
A
G
SDF
E
I
H
K
R
L
K
Q
YILDTGKSDLKDLK
N
F
G
-
S
V
Y
---
Y
N
S
G
L
V
N
A
A
V
--
A
V
E
A
---------
I
R
T
A
Q
---
G
K
F
G
K
R
P
L
N
G
E
E
G
R
W
G
----
L
------
E
H
---
L
N
--
I
D
----------
D
A
R
--
L
K
D
M
G
-
Y
L
G
L
M
Q
N
L
K
L
-------
S
C
R
D
H
E
G
G
G
A
A
R
V
Q
Q
W
DGA
N
W
T
L
IS
E
W
I
A
A
DRALL
R
P
L
I
D
E
K
A
A
A
F
A
K
E
K
RLVPRTCN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
60.07
12%
-206
* C4 *
1WIA
-
TMUB2_MOUSE
A:
[156-250]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
-
G
S
S
---
G
I
N
V
R
L
K
F
L
N
--
D
T
E
E
L
A
V
A
R
PEDT
V
G
T
L
K
---
S
K
Y
F
P
G
Q
E
----
S
Q
M
K
----
L
------
I
Y
QGR
L
L
--
Q
D
----------
P
A
R
TL
S
S
L
-
N
-
I
T
N
N
-
C
V
I
H
C
H
R
S
P
P
G
A
A
V
S
G
P
S
A
S
S
G
P
S
S
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
57.38
9%
-187
- C3 -
3RNV
-
A:
[336-458]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
Y
I
A
K
EGYCY
I
N
I
F
L
A
M
LVNVKESQ
A
K
E
F
T
K
V
V
R
DK
L
V
G
-
E
L
G
---
K
W
P
T
L
L
D
V
A
T
--
A
C
Y
F
---------
L
K
V
F
Y
---
P
D
V
A
N
A
E
L
----
P
R
M
L
----
V
D
HKTK
I
I
H
---
V
V
DS
Y
G
----------
S
L
S
--
T
G
Y
-
H
-
V
L
K
T
-
N
T
V
E
Q
L
I
K
F
T
R
C
N
L
E
S
S
L
K
H
YRVG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
57.28
21%
-83
- C3 -
1LX8
-
VXIS_LAMBD
A:
[1-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
L
-
T
L
Q
---
E
W
N
A
R
Q
R
R
P
R
--
S
L
E
T
---------
V
R
R
W
V
---
R
E
S
R
----------------------------
I
F
--
P
P
----------
P
V
K
--
D
G
R
-----------
E
Y
L
F
-
H
E
S
A
V
K
V
D
L
N
R
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
55.12
16%
-97
- C3 -
3H0L
2
GATB_AQUAE
B:
[3-412]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EK
Y
E
A
V
I
G
L
E
I
H
V
Q
M
DTKTKMFCG
C
K
V
E
F
GAEPNTNVCPVCLGMPG
A
L
P
I
V
-
N
K
R
---
A
V
E
Y
A
I
R
A
S
L
--
A
L
N
C
---------
E
V
H
E
E
---
S
V
F
A
R
K
H
Y
----
F
Y
P
D
----
L
PKG---
Y
Q
---
I
S
--
Q
Y
EKPLATN
G
W
V
E
L
N
--
L
P
N
-
G
-
E
K
K
K
-
V
R
I
R
R
L
H
I
E
E
D
A
G
K
N
I
H
E
G
D
K
T
L
V
D
LNRAGT
P
L
M
E
I
V
T
E
PDIRT
P
E
E
A
R
L
F
L
E
K
L
R
N
I
M
R
Y
A
GVSKADMEKGQ
L
R
C
D
I
N
V
S
I
R
PKGSKEF
G
T
R
V
E
I
K
NVNS
F
R
F
V
Q
K
A
L
E
Y
E
I
E
R
Q
I
N
V
V
E
E
G
G
E
V
V
Q
E
T
R
T
F
D
PQTG
K
T
Y
P
M
RTK
E
E
A
E
DYRYFPDPDLVPLKVK
K
E
W
I
E
E
I
K
K
N
MPEL
P
D
Q
R
F
E
R
L
I
K
E
YGLS
E
Y
E
A
G
I
L
V
N
H
K
E
V
G
D
F
F
E
E
A
V
R
H
FKE
P
K
G
I
V
N
W
L
I
N
D
L
L
G
L
L
R
D
K
GISIEESPVK
P
E
H
L
A
E
L
V
K
L
I
K
E
KVIS
T
K
I
G
K
E
V
I
K
E
M
V
E
TGKT
P
S
Q
I
V
E
E
K
GL
13
Fugue
51.18
17%
-103
- C3 -
2MPN
-
YGAP_ECOLI
A:
[106-173]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
Q
-
P
L
P
---
L
M
R
Q
V
Q
I
A
A
G
--
G
L
I
L
---------
I
G
V
V
L
---
G
Y
T
V
N
S
G
F
-------
F
----
L
------
L
S
---
G
F
--
V
G
----------
A
G
L
--
L
F
A
-
G
-
I
S
G
F
-
S
G
M
A
R
L
L
D
K
M
P
W
N
Q
R
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
50.44
20%
-99
- C3 -
2MPN
-
YGAP_ECOLI
A:
[106-169]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
-
Q
P
L
---
P
L
M
R
Q
V
Q
I
A
A
--
G
G
L
I
---------
L
I
G
V
V
---
L
G
Y
T
V
N
------
S
G
F
F
----
L
------
L
S
---
G
F
--
V
G
----------
A
G
L
--
L
F
A
-
G
-
I
S
G
F
-
S
G
M
A
R
L
L
D
K
M
P
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
50.17
8%
-178
- C3 -
2JSX
-
NAPD_ECOLI
A:
[1-95]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MHTN
W
Q
V
C
S
L
VVQA
K
S
E
-
R
I
S
---
D
I
S
T
Q
L
N
A
F
P
--
G
C
E
V
---------
A
V
S
D
A
---
P
S
G
Q
L
I
V
V
----
V
E
A
E
----
D
------
S
E
---
T
L
--
I
Q
----------
T
I
E
--
S
V
R
-
N
-
V
E
G
V
-
L
A
V
S
L
V
Y
H
Q
Q
E
E
Q
G
E
E
T
P
R
S
HHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
47.23
13%
-101
- C4 -
2KT7
-
?
A:
[34-135]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
T
-
N
N
F
---
T
V
K
V
E
Y
V
D
A
D
--
G
A
E
I
---------
A
P
S
D
T
L
TD
Y
H
Y
V
S
T
P
K
----
D
I
P
G
----
Y
------
K
L
---
R
E
--
I
P
----------
H
N
A
--
T
G
N
-
I
-
T
D
T
G
-
I
I
V
R
Y
I
Y
D
K
I
I
D
V
S
Y
V
D
E
T
G
K
D
L
L
P
V
V
E
I
I
N
SEAAVL
E
H
H
H
H
HH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
37.83
12%
-107
* C3 *
2L0K
-
SP3D_BACSU
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
D
-
Y
I
K
E
R
T
I
K
I
G
K
Y
I
V
E
T
--
K
K
T
V
---------
R
V
I
A
K
---
E
F
G
V
S
K
S
T
----
V
H
K
D
L
T
E
R
L
------
P
E
---
I
N
--
P
D
----------
L
A
N
--
E
V
K
-
E
-
I
L
D
Y
-
H
K
S
I
R
H
L
R
G
G
E
A
T
K
L
K
Y
K
K
D
EILEGEPVQQS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
37.24
14%
-176
- C5 -
3ZE3
4
KDGL_ECOLI
A:
[36-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
A
A
F
R
Q
E
G
V
A
V
L
L
C
---------
V
V
I
A
A
---
W
L
D
V
-
D
A
-----
V
T
R
V
----
L
------
L
I
---
S
S
--
V
M
----------
L
V
M
--
I
V
E
-
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
32.12
29%
-
- C1 -
2RUP
-
P2RX4_RAT
A:
[156-162]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
T
-
C
E
V
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
31.00
29%
-150
- C5 -
2G3V
-
CAGS_HELPY
A:
[55-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
T
-
N
K
G
---
A
L
D
K
V
L
R
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
23.24
12%
-15
- C4 -
2AYJ
1
RL40_SULSO
A:
[1-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
L
T
D
P
A
---
K
L
Q
I
V
Q
Q
R
V
F
--
L
K
K
V
---------
C
R
K
C
G
---
A
L
N
P
I
R
A
-----------------------------
T
K
----------
C
R
R
--
C
H
S
-
T
-
N
L
R
L
-----------
K
K
K
E
L
P
T
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
22.61
16%
-83
* C5 *
1ML8
-
YHFA_ECOLI
A:
[105-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
-
L
S
A
E
K
Y
-
C
S
V
A
L
M
L
E
K
A
V
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
20.67
9%
-76
- C2 -
2M0J
-
B:
[6-16]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
---
G
F
Q
R
I
V
R
L
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
18.84
10%
-95
- C5 -
2ONF
1
?
A:
[113-132]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
Q
-
L
-
A
E
K
Y
-
C
F
I
S
R
A
I
R
N
N
V
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
4.83
5%
17
- C5 -
3CJE
-
?
A:
[135-153]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
-
A
-
A
K
K
G
-
C
F
L
E
Q
T
L
G
Q
A
N
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------