@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu07190: (2016-06-11 )
MVSKSTIDPEVIEKIISSLETLDFGTVQITVHDSQITQIEKIEKHRFSLKRKESK
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-...--..10....--....--------20..--.-------...-..-------------30--.-..-----------.--....40----------........50....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVSK-STI--
D
P
E
V
I
E
K
I
--
I
S
S
L
--------ETLD--
F
-------
G
T
V
-
Q
I
-------------
T
V--H-DS-----------Q--
I
T
Q
I
E
K
----------
I
E
K
H
R
F
S
LKRKESK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
60.12
20%
-184
- C3 -
2DFS
-
MYO5A_CHICK
A:
[5-1080]
ELYTKY
A
R
V
W
I
P
D
PEEV
W
K
S
A
E
L
LKDYKPGDK
V
L
Q
L
R
L
EE
G
K
D
L
E
Y
C
L
DPKTKEL
P
P
L
R
N
P
DILVGENDLTALSYLH
E
P
A
V
L
H
N
L
K
V
R
F
IDSKLIYTYCGI
V
L
V
A
I
N
PYEQLPIYG
E
D
I
I
N
A
Y
SGQNMGDMDPH
I
F
A
V
A
E
E
A
Y
K
Q
M
A
R
D
E
R
N
Q
S
I
I
V
S
G
E
S
GAG
K
T
V
S
A
K
Y
A
M
R
Y
F
A
T
V
S
GSASEAN
V
E
E
K
V
L
A
S
N
P
I
M
E
S
I
G
N
A
K
T
TRNDNSSR
F
G
K
Y
I
E
I
G
F
D
KR
Y
R
I
I
G
A
N
M
R
T
Y
LLE
K
S
R
V
V
F
QAEEERNY
H
I
F
Y
Q
L
C
A
S
AALPEFKTLRLGNANYFHYTKQGGSPVIDGID
D
A
K
E
M
V
N
T
R
Q
A
C
T
L
L
GIS
D
S
Y
Q
M
G
I
F
R
I
L
A
G
I
L
H
L
G
N
V
E
F
A
S
R
D
SD
S
C
A
I
P
P
KH
D
P
L
T
I
F
C
D
L
M
GVD
Y
E
E
M
A
H
W
L
C
H
RKLAT
Y
I
K
P
I
S
K
L
H
A
I
N
A
R
D
A
L
A
K
H
I
Y
A
N
L
F
N
W
I
V
D
H
V
N
K
A
L
HSTVKQH
S
F
I
G
V
L
D
I
Y
G
FETFEINS
F
E
Q
F
C
I
N
Y
A
N
E
K
L
Q
Q
Q
F
N
M
H
V
F
K
L
E
Q
E
E
Y
M
K
E
QIPWTL
I
D
F
Y
D
N
Q
P
C
I
N
L
I
EAKMG
V
L
D
L
L
D
E
E
C
K
MPKGS
D
D
T
W
A
Q
K
L
Y
N
T
HLNKCAL
F
E
K
P
RLSNK
A
F
I
I
KHFA
D
K
V
E
Y
Q
CEG
F
L
E
K
N
K
D
T
V
Y
E
E
Q
I
K
V
L
K
S
SKKFKL
L
P
E
L
F
QHKKT
V
G
H
Q
F
R
N
S
L
H
L
L
M
E
T
L
N
A
T
T
P
H
Y
V
R
C
I
K
PNDFKFPFTFD
E
K
R
A
V
Q
Q
L
R
A
C
G
V
L
E
T
I
R
I
S
A
A
G
FP
S
R
W
T
Y
Q
E
F
F
S
R
Y
R
VLMKQKDV
L
S
D
R
-
K
Q
T
--
C
K
N
V
L
E
K
L
--
I
L
D
K
--------
D
K
Y
Q
--
F
-------
G
K
T
-
K
I
-------------
F
F
--
R
-
A
G
-----------
Q
--
V
A
Y
L
E
K
----------
I
R
A
D
K
L
R
A
A
C
I
R
I
Q
K
T
I
R
G
W
L
M
R
K
K
Y
M
R
M
R
R
A
A
I
T
I
Q
R
Y
V
R
G
H
Q
A
R
C
Y
A
T
F
L
R
R
T
R
A
A
I
I
I
Q
K
F
Q
R
M
Y
V
V
R
K
R
Y
Q
C
M
R
D
A
T
I
A
L
Q
A
L
L
R
G
Y
L
V
R
N
K
Y
Q
M
M
L
R
E
H
K
S
I
I
I
Q
K
H
V
R
GWLARVHYHRT
L
K
A
I
V
Y
L
Q
C
C
Y
R
R
M
M
A
K
R
E
L
K
K
LMN
N
L
E
I
T
Y
S
T
E
T
E
K
L
R
S
D
V
E
R
L
R
M
S
E
E
E
A
K
N
A
T
N
R
V
L
S
L
Q
E
E
I
A
K
L
R
K
E
L
H
Q
T
Q
T
E
K
K
T
I
E
E
W
A
D
K
Y
K
H
E
T
E
Q
L
V
S
E
L
K
E
Q
N
T
L
L
K
T
E
K
E
E
L
N
R
R
I
H
D
Q
A
K
E
I
T
E
T
M
E
K
K
L
V
E
E
T
K
Q
L
E
L
D
L
N
D
E
R
L
R
Y
Q
10
HHSearch
51.52
22%
-144
* C2 *
2M9V
-
EST3_YEAST
A:
[68-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
--
T
K
F
Y
--------
N
V
C
D
--
Y
-------
K
-
V
-
Y
A
-------------
S
I
--
R
-
D
S
S
H
Q
I
L
V
E
F
S
Q
E
C
--
V
S
N
F
E
R
----------
T
H
N
C
R
I
T
S
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
50.65
29%
-57
- C3 -
2N2U
-
?
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
D
L
-
K
I
D
V
S
D
D
E
E
A
E
K
I
--
I
R
E
I
R
E
QWPKA
T
V
T
R
T
--
N
-------
G
D
I
-
K
L
-------------
D
A
--
Q
T
E
K
-----------
E
--
A
E
K
M
E
K
A
V
K
K
V
KPNAT
I
R
K
T
G
G
S
L
E
H
H
H
H
H
H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
47.34
31%
-104
- C1 -
4U06
1
?
A:
[69-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
-
L
T
T
--
L
P
K
E
I
E
Q
L
---
K
N
L
--------
Q
V
L
D
--
L
-------
G
S
N
-
Q
L
-------------
T
V
--
L
-
P
Q
-----------
E
--
I
G
Q
L
K
N
----------
L
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
46.81
14%
-151
- C3 -
5DWM
3
?
B:
[9-187]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
P
V
I
R
D
FQPAD
I
E
T
I
T
A
I
Y
T
Q
A
V
L
T
GTGSYEI
E
P
P
T
M
D
E
M
A
K
R
F
A
A
F
A
D
Q
G
F
P
I
L
V
A
E
A
DGRVL
G
Y
A
Y
A
S
Y
FRVRPAYRW
L
A
E
D
S
I
Y
I
A
P
D
A
K
G
-
Q
G
I
--
G
K
L
L
L
R
E
L
--
I
A
R
I
--------
S
A
L
G
--
F
-------
R
Q
L
-
L
A
-------------
V
I
--
G
-
D
G
-----------
E
HN
I
G
S
V
K
L
----------
H
E
S
L
G
F
T
H
C
G
R
I
E
G
SGFKHG
R
W
L
D
T
V
L
M
Q
L
P
L
NGGRS
T
E
P
G
P
SPLS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
45.33
14%
-80
- C3 -
2LEP
-
GLPG_ECOLI
A:
[1-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
M
I
-
T
S
F
A-
N
P
R
V
A
Q
A
F
--
V
D
Y
M
--------
A
T
Q
G
--
V
I
L
T
I
Q
QH
N
Q
S
-
D
V
-------------
W
L
--
A
-
D
E
-----------
S
--
Q
A
E
R
V
R
----------
A
E
L
A
R
F
L
E
N
P
A
D
L
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
41.73
20%
-163
- C3 -
4J6E
1
?
A:
[159-191]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
V
--
A
R
E
I
--------
G
R
L
D
--
I
-------
G
Q
--
G
A
-------------
V
V
--
C
-
E
G
-----------
L
--
V
L
A
V
E
A
----------
Q
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
40.49
12%
-31
- C3 -
1JW2
-
HHA_ECOLI
A:
[1-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
E
K
-
P
L
T
--
K
T
D
Y
L
M
R
L
R
R
C
Q
T
I
--------
D
T
L
E
R
V
I
-------
E
K
N
-
K
Y
-------------
E
L
--
S
-
D
N
-----------
E
--
L
A
V
F
Y
S
----------
A
A
D
H
R
L
A
E
L
T
M
N
K
L
YDKIP
S
S
V
W
K
F
I
R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
40.30
14%
-569
* C1 *
3LD7
-
?
A:
[73-86]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
A
-------
Q
Y
N
-
L
M
-------------
E
V
--
D
-
G
E
-----------
R
--
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
40.23
18%
-222
- C2 -
2ICS
-
DEACT_ENTFA
A:
[20-34]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
E
I
-------------
A
I
--
K
-
E
K
-----------
K
--
I
A
A
V
A
A
----------
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
40.20
12%
-54
- C3 -
1SKV
-
D63_SSV1
A:
[2-65]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
K
E
V
L
E
K
E
L
F
E
M
L
D
E
--
D
V
R
E
L
L
S
L
--
I
H
E
I
--------
K
I
D
R
--
I
-------
T
G
N
M
D
K
-------------
Q
K
--
L
-
G
K
-----------
A
--
Y
F
Q
V
Q
K
----------
I
E
A
E
L
Y
Q
L
I
K
V
S
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
37.44
10%
-221
- C3 -
4ALZ
1
A:
[66-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
M
E
E
L
R
Q
G
A
--
E
F
I
L
--------
Q
R
L
G
--
Y
-------
H
G
I
-
E
V
-------------
S
L
A
P
Q
-
A
G
-----------
W
--
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
37.00
10%
-131
- C3 -
2O5V
-
RECF_DEIRA
A:
[305-356]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
D
P
H
R
R
Q
Y
L
--
L
D
L
A
--------
A
S
V
-----------
P
Q
A
-
I
V
T
G
TELAPGAA
L
T
L
R
A
--
Q
-
A
G
-----------
R
--
F
T
P
V
A
D
----------
E
E
M
Q
A
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
36.63
50%
-155
- C2 -
4DCI
-
?
A:
[135-148]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
A
I
-------------
V
V
--
R
-
D
G
-----------
V
--
I
Q
S
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
36.11
31%
-218
- C2 -
4ICS
-
?
A:
[283-298]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
K
V
-------------
T
F
--
K
-
D
G
-----------
Q
--
I
V
D
I
T
A
----------
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
35.66
15%
-159
- C2 -
1I7N
-
SYN2_RAT
A:
[357-390]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
D
A
C
--
S
E
M
F
--------
G
G
L
D
--
I
-------
C
A
V
-
K
A
-------------
V
H
--
G
K
D
G
-----------
K
--
D
Y
I
F
E
V
----------
M
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
35.56
12%
-23
- C3 -
3GAA
-
?
A:
[4-246]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIMVNKKAS
E
S
Q
V
M
ELEKRNYNN
P
V
V
L
C
G
F
AGSTP
T
G
V
L
A
A
S
Y
I
V
E
T
L
G
M
H
Q
V
A
HLISQHIPPVAVFVGG
K
L
R
H
P
F
R
I
Y
A
N
NSNT
V
L
V
A
M
C
EVPISSAH
I
Y
E
I
S
N
T
L
M
N
W
I
D
Q
V
GAS
E
I
V
I
M
E
G
S
P
ANGIPEE
R
P
V
F
A
V
A
E
K
P
K
L
D
K
F
K
K
A
GIQPADSA
I
I
A
G
M
G
G
G
I
L
N
E
C
L
V
R
K
I
T
G
L
S
F
I
T
P
T
S
V
-
D
I
P
--
D
P
G
A
V
L
S
I
--
I
E
A
I
--------
N
K
A
Y
--
N
-------
L
K
I
-
K
T
-------------
D
L
--
L
-
E
E
-----------
Q
--
V
K
A
L
D
E
----------
Q
I
K
K
I
E
E
Q
Y
K
E
L
Q
E
K
QKE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
34.87
13%
-190
- C2 -
1ZJC
-
?
A:
[286-301]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
K
L
-------------
M
F
--
K
-
D
G
-----------
E
--
I
I
D
F
S
A
----------
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
34.25
32%
-21
- C2 -
3O6U
-
?
A:
[48-66]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
L
-
S
I
-------------
K
V
--
S
-
D
G
-----------
K
--
I
T
E
A
K
Y
----------
N
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
32.53
16%
-117
- C3 -
5CGX
1
?
A:
[3-41]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
G
E
-
A
P
L
--
T
A
T
V
D
G
I
I
--
Q
P
M
L
--------
K
A
Y
R
--
I
P------
G
M
A
-
V
A
-------------
V
L
--
K
-
D
G
-----------
K
--
A
H
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------