@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu07360: (2016-06-11 )
MELTINTEKETADILDAFIKVAPYLNSLVQDDITIGIYDTEKLLVNIPAKTFSLNVKAGDPLQEGDIITDAIRSNQKKTSMVPKELFGFPLIARAIPLHDENGRVIGGVGLGTSLEESSKLHDVAESLSAVVEQTAAAISDISESINGFSTQMSGISSQAKKVSESAGEIADISVTVKGISDQSNLLGLNAAIEAARAGESGKGFSVVADEIRKLATHSKENVGQIDQITKKIHSLLKGLEESIESINQHTDGQAAAVEQISATMQEISGSAQHLAKMAEKALEEE
Atome Classification :
(20 SA)
.....-------....10........20........30----------........40--.........50.-.......60......--------------..-----------70.......----.---80........90...-.....100.......110------.......--------------..120.......130...----------------....140.......150.......160.......-------170..-.....180.......190...-..--..200.......210.......220-......---------------...230-----........240----------.......250.....--..260.......270.......280....-------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
E
L
T
I-------NTEK
E
T
A
D
I
L
D
A
F
I
K
V
A
P
Y
L
N
S
L
V
QD----------D
I
T
I
G
I
YDT---
E
K
L
L
V
NIPA
K
T
F
-
S
L
N
VKAGDPLQEG
D
I
--------------
I
T
-----------
D
A
I
RSNQKK----T---SM
V
P
K
E
LFG
F
P
L
I
A
R-AIPLHDENG
R
V
I
G
GVG--------LGTS
L
E
E
--------------
S
S
K
L
H
D
V
A
E
S
L
S
A
V
V
E
Q
T
----------------
A
A
A
I
S
D
I
S
E
S
I
N
G
F
S
T
Q
M
S
G
I
S
S
Q
A
K
K
V
S
E
SAG
E
-------
I
A
D
I
S
-
V
T
V
KGISDQSN
L
L
G
L
N
A
A
I
E
A
-AR--AGESGK
G
F
S
V
V
A
D
E
I
R
K
L
A
THSK---ENVG
Q
I
---------------
D
Q
I
T
K
------
K
I
H
S
L
L
K
G
L
E
E
----------
S
I
E
S
I
N
QHTDG
Q
A
A
A
--
V
E
Q
I
S
A
T
M
Q
E
IS
G
S
A
Q
H
L
A
K
M
A
E
K
A
LEEE-------------------------------------------------------------------
5
PsiBlast_PDB
67.32
27%
-114
- C4 -
3G6B
-
?
A:
[67-220]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
Q
L
V
S
V
I
Q
D
M
----------------
E
K
I
S
E
N
I
M
E
E
L
K
K
S
G
T
N
V
D
Q
I
V
E
R
V
K
E
A
S
S
Q
I
G
E
T
L
E
N
I
R
S
I
E
K
L
I
-
Q
N
I
M
R
I
A
R
E
T
N
I
L
A
L
N
A
T
I
E
A
-
A
R
--
A
G
E
A
G
K
G
F
M
I
V
A
N
E
V
Q
N
L
S
N
E
T
N
---
E
---
V
T
---------------
K
Q
I
V
E
------
K
A
R
E
I
L
E
S
S
Q
R
----------
S
L
E
N
L
----
E
F
M
A
N
L
--
F
E
T
V
G
K
T
L
Q
N
M
V
R
F
M
E
N
I
V
K
L
---------------------------------------------------------------------------
41
Fugue
66.29
20%
-60
- C4 -
2CH7
2
MCP2_THEMA
A:
[1-309]
----------------------------------------------------------------
G
S
H
M
K
D
V
Q
-
T
E
T
F
S
V
A
E
S
I
E
E
I
S
K
--------------
A
N
-----------
E
E
I
T
N
Q
L
L
G
----
I
---
S
K
E
M
D
N
I
S
T
R
I
E
S
I
S
-
A
S
V
Q
E
T
T
A
G
S
E
E
I
S
S
A
--------
T
K
N
I
A
D
S
--------------
A
Q
Q
A
A
S
F
A
D
Q
S
T
Q
L
A
K
E
A
----------------
G
D
A
L
K
K
V
I
E
V
T
R
M
I
S
N
S
A
K
D
V
E
R
V
V
E
S
F
Q
K
G
A
E
E
-------
I
T
S
F
V
-
E
T
I
N
A
I
A
E
Q
T
N
L
L
A
L
N
A
A
I
E
A
-
A
R
--
A
G
E
A
G
R
G
F
A
V
V
A
D
E
I
R
K
L
A
E
E
S
Q
---
Q
A
S
E
N
V
---------------
R
R
V
V
N
------
E
I
R
S
I
A
E
D
A
G
K
----------
V
S
S
E
I
T
A
R
V
E
E
G
T
K
L
--
A
D
E
A
D
E
K
L
N
S
I
V
G
A
V
E
R
I
N
E
M
L
Q
N
I
A
A
A
I
E
E
Q
T
A
A
V
D
E
I
T
T
A
M
T
E
N
A
K
N
A
E
E
I
T
N
S
V
K
E
V
N
A
R
L
Q
E
I
S
A
S
T
E
E
V
T
S
R
V
Q
T
I
R
E
N
V
Q
M
L
K
E
I
V
A
R
YK
43
Fugue
61.54
17%
-37
- C- -
4E40
-
?
A:
[3-247]
--
G
E
I
-------
K
V
E
L
E
D
S
D
D
V
A
A
A
C
E
L
R
A
Q
L
A
---------------
G
V
S
I
A
S
G
I
L
---
L
R
P
A
V
I
R
N
A
T
T
E
-
F
S
R
K
K
S
E
D
I
L
A
K
G
G
A
--------------
A
V
-----------
E
R
A
S
A
A
V
D
R
----
V
---
S
------------------------------
G
--------
L
D
K
T
N
E
T
--------------
A
Q
K
V
R
K
A
A
A
V
A
H
H
A
L
E
H
V
----------------
K
E
E
V
E
I
V
A
K
K
V
N
E
I
I
E
L
T
A
G
A
T
E
H
A
K
G
A
K
A
N
G
D
A
-------
S
A
V
K
V
-
S
N
L
L
A
R
A
K
E
S
E
N
Q
Y
V
K
E
A
A
E
E
C
S
E
--
S
T
N
Y
D
V
T
A
K
S
L
A
A
A
L
D
K
L
P
G
V
K
E
---
D
N
--
A
V
---------------
K
T
T
F
Q
------
S
I
L
T
S
L
D
N
L
D
K
----------
D
V
K
S
V
E
Q
R
A
E
E
L
E
T
A
--
L
E
K
A
E
R
Q
L
E
K
A
E
K
A
A
E
E
A
E
T
E
S
S
K
V
-----------------------------------------------------------------------
6
PsiBlast_PDB
61.36
29%
-94
- C4 -
3G67
-
?
A:
[67-208]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
Q
L
V
S
V
I
Q
D
M
----------------
E
K
I
S
E
N
I
M
E
E
L
K
K
S
G
T
N
V
D
Q
I
V
E
R
V
K
E
A
S
S
Q
I
G
E
T
L
E
N
I
R
S
I
E
K
L
I
-
Q
N
I
M
R
I
A
R
E
T
N
I
L
A
L
N
A
T
I
E
A
-
A
R
--
A
G
E
A
G
K
G
F
M
I
V
A
N
E
V
Q
N
L
S
N
E
T
N
---
E
---
V
T
---------------
K
Q
I
V
E
------
K
A
R
E
I
L
E
S
S
Q
R
----------
S
L
E
N
L
----
E
F
M
A
N
L
--
F
E
T
V
G
K
T
L
Q
---------------------------------------------------------------------------------------
44
Fugue
55.69
16%
-125
- C4 -
1P68
-
?
A:
[1-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
G
K
L
N
D
L
L
E
D
L
Q
E
V
L
K
N
-
L
H
-------
K
N
W
H
G
G
K
D
N
L
H
D
V
D
N
H
L
Q
---
N
V
I
E
D
I
---------------
H
D
F
M
Q
GGGSGG
K
L
Q
E
M
M
K
E
F
Q
Q
----------
V
L
D
E
L
N
N
H
L
Q
G
G
K
H
T
--
V
H
H
I
E
Q
N
I
K
E
I
F
H
H
L
E
E
L
V
H
R
---------------------------------------------------------------------------
2
PsiBlast_PDB
51.65
39%
-6
- C4 -
3JA6
-
MCP2_THEMA
G:
[343-485]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
-------
I
T
S
F
V
-
E
T
I
N
A
I
A
E
Q
T
N
L
L
A
L
N
A
A
I
E
A
-
A
R
--
A
G
E
A
G
R
G
F
A
V
V
A
D
E
I
R
K
L
A
E
E
S
Q
QAS
E
N
V
R
R
V
VNEIRSIAEDAGKVS
S
E
I
T
A
------
R
V
E
E
G
T
K
L
A
D
E
ADEKLNSIVG
A
V
E
R
I
N
E
M
L
Q
N
I
A
A
A
--
I
E
E
Q
T
A
A
V
D
E
I
T
T
A
M
T
E
N
A
K
N
A
E
E
------------------------------------------------------------------------
32
HHSearch
50.76
15%
-86
- C5 -
5DKK
4
?
A:
[10-125]
---------------------------------
K
A
L
Q
T
A
---------
Q
Q
N
F
V
V
T
D
P
SLP
D
N
P
I
V
Y
A
S
Q
G
F
L
N
L
T
G
Y
S
L
D
Q
I
L
G
R
N
C
R
FLQGPETD
P
K
A
V
E
R
I
R
-----------
K
A
I
E
Q
G
N
D
M
----
S
V
C
L
L
N
Y
R
V
D
G
T
T
F
W
N
Q
F
F
-
I
A
A
L
R
D
A
G
G
N
V
T
N
F
V
G
--------
V
Q
C
K
V
S
D
--------------
Q
Y
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
50.22
9%
-66
- C4 -
2YFA
4
MCPS_PSEPK
A:
[18-253]
------------
G
S
H
M
G
D
I
G
Q
L
N
K
D
L
T
D
L
R
I
A
R
L
Q
Y
M
I
----------
A
------------------------------
N
G
D
D
T
A
A
A
N
--------------
T
L
-----------
A
K
L
D
A
F
S
K
Q
----
Q
---
A
Y
L
A
T
T
F
K
S
P
E
N
V
K
L
-
L
G
E
L
G
D
T
I
S
A
Y
--
K
L
S
--------
L
N
K
M
R
Q
G
--------------
Y
D
A
T
R
A
A
R
V
S
M
D
S
S
A
I
R
A
----------------
D
Q
A
M
D
A
L
S
Q
E
V
M
A
R
P
E
A
D
S
V
R
L
A
Q
Y
Q
L
I
S
K
A
R
Q
Q
-------
L
L
Q
V
R
-
I
D
V
R
G
Y
I
A
E
N
S
-----------------------
S
A
N
E
Q
A
A
L
R
Q
L
D
A
A
L
---
A
D
T
D
N
L
---------------
K
R
Q
L
P
------
S
E
D
A
R
L
Q
Q
F
E
N
----------
A
V
L
A
Y
R
D
A
V
R
Q
F
R
D
A
--
V
A
N
I
T
T
S
R
A
E
M
T
V
Q
G
A
D
I
V
K
R
S
D
A
L
Y
Q
I
Q
L
E
R----------------------------------------------------------------
21
HHSearch
49.61
40%
-65
- C4 -
1QU7
-
MCP1_ECOLI
A:
[345-430]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
N
V
V
Q
T
M
R
D
I
S
T
S
S
Q
K
-------
I
A
D
I
I
-
S
V
I
D
G
I
A
F
Q
T
N
I
L
A
L
N
A
A
V
E
A
-
A
R
--
A
G
E
Q
G
R
G
F
A
V
V
A
G
E
V
R
N
L
A
Q
R
S
A
---
Q
A
A
R
E
I
---------------
K
S
L
I
E
------
D
S
V
G
K
V
D
V
------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
49.07
16%
-116
- C5 -
3LUQ
5
?
A:
[3-114]
-----------------------------
E
R
L
R
L
F
T
E
H
A---------
P
A
A
L
A
M
F
D
R
---
E
M
R
Y
L
A
V
S
R
R
W
R
E
D
Y
G
L
G
D
G
D
I
L
G
M
S
H
Y
D
-------------
I
F
PEIG
E
E
W
K
S
V
H
R
R
G
L
A
G
E
V
I
R
V
E
E
D
---
C
F
V
R
--
G
R
T
Q
W
L
R
W
E
-
V
R
P
W
Y
E
G
E
G
R
V
G
G
V
V
I
--------
F
T
E
D
I
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
47.78
14%
-74
- C5 -
3T50
1
LOVHK_BRUME
A:
[3-116]
-----------------------------------
S
E
F
T---------
L
M
P
M
L
I
T
N
P
HLP
D
N
P
I
V
F
A
N
P
A
F
L
K
L
T
G
Y
E
A
D
E
V
M
G
R
N
C
R
FLQGHGTD
P
A
H
V
R
A
I
K
-----------
S
A
I
A
A
E
K
P
I
----
D
I
D
I
I
N
Y
K
K
S
G
E
A
F
W
N
R
L
H
-
I
S
P
V
H
N
A
N
G
R
L
Q
H
F
V
S
--------
S
Q
L
D
V
T
L
--------------
E
L
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
47.50
15%
-123
- C5 -
4MN5
1
WALK_STAAU
A:
[15-121]
-----------------------------
R
R
L
D
S
V
I
T
H
M---------
S
D
G
I
I
A
T
D
R
---
R
G
R
I
R
I
V
N
D
M
A
L
K
M
L
G
M
A
K
E
D
I
I
G
Y
Y
M
L
S
-------------
V
L
SLEDEFKL---
E
E
I
Q
E
N
N
D
S
----
F
---
L
L
D
L
----
G
L
I
A
R
V
N
-
F
S
T
I
V
Q
E
T
G
F
V
T
G
Y
I
A
--------
V
L
H
D
V
T
E
--------------
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
47.43
16%
-51
- C1 -
3THI
1
THI1_PANTH
A:
[1-362]
I
T
L
K
V
A
I
YPYVP
D
P
A
R
F
Q
A
A
V
L
D
Q
W
Q
R
Q
E
P
G
V
K
L
E
F
T
D
W
D
SYSADPPD
D
L
D
V
F
V
L
D
----
S
I
F
L
S
H
F
V
D
A
G
Y
-
L
L
P
F
G
S
Q
D
I
D
Q
A
E
D
V
--------------
L
P
-----------
F
A
L
Q
G
A
K
R
N
------------
G
E
V
Y
G
L
P
Q
I
L
C
T
N
L
L
F
Y
R
K
G
D
L
K
I
G
Q
V
D
N
I
Y
E
L
Y
K
K
I
G
T
S
H
S
E
QIPPPQN
K
G
L
L
I
N
M
A
G
G
T
T
K
A
S
M
Y
L
E
A
L
I
D
V
T
GQYTEYD
L
L
P
P
LDPLN
D
K
V
I
R
G
L
R
L
L
I
N
M
A
G
E
K
P
S
Q
Y
V
P
E
D
G
D
A
Y
V
R
A
S
W
-------
F
A
Q
G
S
G
R
A
F
I
G
Y
S
E
S
M
M
R
M
G
D
Y
A
E
Q
V
R
-
F
K
P
I
S
S
S
A
G
Q
D
I
P
L
F
Y
S
D
V
V
S
V
N
S
K
T
A
---
H
--------------------
P
E
L
A
K
------
K
L
A
N
V
M
A
S
A
D
T
----------
V
E
Q
A
L
R
P
Q
A
D
G
Q
Y
P
Q
YL
L
P
A
R
H
Q
V
Y
E
A
L
M
Q
D
Y
P
I
Y
S
E
L
A
Q
I
V
N
K
P
S
NR
V
F
R
L
G
PE
V
R
T
W
L
K
D
A
K
Q
V
LPEALG-----------------------------------------
31
HHSearch
47.05
17%
-63
- C5 -
4EET
1
PHOT2_ARATH
B:
[7-114]
------------------------------------------------
E
K
N
F
V
I
T
D
P
RLP
D
N
P
I
I
F
A
S
D
G
F
L
E
L
T
E
Y
S
R
E
E
I
L
G
R
N
A
R
FLQGPETD
Q
A
T
V
Q
K
I
R
-----------
D
A
I
R
D
Q
R
E
T
----
T
V
Q
L
I
N
Y
T
K
S
G
K
K
F
W
N
L
L
H
-
L
Q
P
V
R
D
Q
K
G
E
L
Q
Y
F
I
G
--------
V
Q
L
D
G
S
D
--------------
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.42
39%
11
- C4 -
2CH7
1
MCP2_THEMA
A:
[123-265]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
-------
I
T
S
F
V
-
E
T
I
N
A
I
A
E
Q
T
N
L
L
A
L
N
A
A
I
E
A
-
A
R
--
A
G
E
A
G
R
G
F
A
V
V
A
D
E
I
R
K
L
A
E
E
S
Q
Q
A
S
E
N
V
R
R
V
V
N
E
I
R
S
I
A
E
D
A
G
K
V
S
S
E
I
T
A
------
R
V
E
E
G
T
K
L
A
D
E
A
D
E
K
L
N
S
I
V
G
A
V
E
R
I
N
E
M
L
Q
N
I
A
A
A
--
I
E
E
Q
T
A
A
V
D
E
I
T
T
A
M
T
E
N
A
K
N
A
E
E
------------------------------------------------------------------------
26
HHSearch
45.77
14%
-82
- C5 -
2Z6D
1
PHOT2_ARATH
A:
[7-124]
------------------------------
E
L
K
T
A
L
S
T
L
---------
Q
Q
T
F
V
V
S
D
A
TQP
H
C
P
I
V
Y
A
S
S
G
F
F
T
M
T
G
Y
S
S
K
E
I
V
G
R
N
C
R
FLQGPDTD
K
N
E
V
A
K
I
R
-----------
D
C
V
K
N
G
K
S
Y
----
C
G
R
L
L
N
Y
K
K
D
G
T
P
F
W
N
L
L
T
-
V
T
P
I
K
D
D
Q
G
N
T
I
K
F
I
G
--------
M
Q
V
E
V
S
K
--------------
Y
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
45.43
17%
-54
- C5 -
2V0U
7
?
A:
[3-125]
------------------------------
F
L
A
T
T
L
E
R
I---------
E
K
N
F
V
I
T
D
P
RLP
D
N
P
I
I
F
A
S
D
S
F
L
Q
L
T
E
Y
S
R
E
E
I
L
G
R
N
C
R
FLQGPETD
R
A
T
V
R
K
I
R
-----------
D
A
I
D
N
Q
T
E
V
----
T
V
Q
L
I
N
Y
T
K
S
G
K
K
F
W
N
L
F
H
-
L
Q
P
M
R
D
Q
K
G
D
V
Q
Y
F
I
G
--------
V
Q
L
D
G
T
E
--------------
H
V
R
D
A
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
45.36
17%
-130
- C5 -
4LRZ
-
DHAR_ECOLI
E:
[203-306]
-----------------------------
N
Q
L
N
A
L
L
E
S
M---------
D
D
G
V
I
S
W
D
E
---
Q
G
N
L
Q
F
I
N
A
Q
A
A
R
V
L
R
L
D
A
T
A
S
Q
G
R
A
I
T
ELLTLPAV------
L
Q
-----------
Q
A
I
K
Q
A
H
P
L
----
K
HVE
A
T
F
E
S
Q
H
Q
F
I
D
A
V
I
T
-
L
K
P
I
I
E
T
Q
G
--
T
S
F
I
L
--------
L
L
H
P
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
45.22
32%
-162
- C4 -
1KY9
-
DEGP_ECOLI
A:
[221-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
G
I
N
T
A
I
L
A
-
P
D
--
G
G
N
I
G
I
G
F
A
I
P
S
N
M
V
K
N
L
T
S
Q
M
V
---
E
-
Y
G
Q
V
---------------
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
45.13
36%
-66
- C4 -
3G67
-
?
A:
[103-188]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
A
S
S
Q
I
G
E
T
L
E
N
I
R
S
-------
I
E
K
L
I
-
Q
N
I
M
R
I
A
R
E
T
N
I
L
A
L
N
A
T
I
E
A
-
A
R
--
A
G
E
A
G
K
G
F
M
I
V
A
N
E
V
Q
N
L
S
N
E
T
N
---
E
V
T
K
Q
I
---------------
V
E
K
A
R
------
E
I
L
E
S
S
Q
R
------------------------------------------------------------------------------------------------------------------------------