@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08230: (2016-06-13 )
MNKSFEIGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGSIGLPSFMAYVIAAIELIGGVLVFFGLATRIVGVLFALTLIGAIITVKLKAPFMGNAEFDYLLLLTSIHLALTGSRFLALDPFVFKGKKNGNVSA
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...---.---..--------.-..20........30-..----.....-.-40...--.....50.....-...60.......------.70.-...-....80........90..----------...-...100....-..-----.110.......-120---.......-.130..------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNKS
F
E
I
G
T
L
-
L
L
R
---
V
---
I
T
--------
G
-
I
I
F
F
V
H
G
L
S
K
FQGM-
E
G
----
T
I
Q
F
F
-G-SIG
L
P
--
S
F
M
A
Y
V
I
A
A
I
E
L
-
I
G
G
V
L
V
F
F
G
L
A
T
------
R
I
V
G
-
V
L
F
-
A
L
T
L
I
G
A
I
I
T
V
K
L
KAPFM----------GNA-EF
D
Y
L
L
L
L
T
S
-
I
H
-----
L
A
LTGS
R
F
L
A
L-D-
P
---
F
V
FKGKK-NGNVSA------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
60.39
21%
-180
- C7 -
5DZT
2
?
A:
[4-992]
NLINVLS
I
N
E
R
C
F
L
L
K
Q
S
GNEKYDI
K
N
L
Q
A
W
K
E
RKSVLK
Q
D
D
L
D
Y
L
I
K
YKYES
L
D
N
F
G
L
G
I
TPIENFPD
K
E
V
A
I
Q
Y
I
K
D
Q
S
W
Y
I
F
F
E
S
I
L
D
S
YNDSEEQLLEVDASYPF
R
Y
F
L
Q
Y
A
R
L
F
L
L
D
L
N
S
E
L
NICT
K
E
F
I
I
N
L
L
E
I
L
T
Q
E
L
I
H
L
T
S
K
T
L
V
L
D
L
HRF
I
Y
Y
L
K
K
R
F
NS
K
K
D
I
I
A
F
Y
T
C
Y
P
E
L
M
R
I
T
V
V
R
M
R
Y
F
L
D
N
T
K
Q
M
L
I
R
V
T
E
D
L
P
S
I
Q
N
C
F
NIQSSELNSISESQGDSHSRG
K
T
V
S
T
L
T
F
SDG
K
K
I
V
Y
K
PKINS
E
N
K
L
R
D
F
F
E
F
L
N
K
E
LEAD
I
Y
I
V
K
K
VTRNT
Y
F
Y
E
E
YIDN
I
E
I
N
N
I
E
E
V
K
K
Y
Y
E
R
Y
G
K
L
I
G
I
A
F
L
F
NVTDLHYENIIAHGEYPVIIDNETFFQQNIPIEFGNS
A
T
V
D
A
K
Y
K
Y
L
D
SIMVTGLVPKN
T
P
I
M
NN
E
K
I
S
FISY
E
K
Y
I
V
T
G
M
K
S
I
L
M
K
A
K
D
S
K
K
K
I
L
A
Y
I
N
N
NLQN
L
I
V
R
N
VIRP
T
Q
R
Y
A
D
M
L
E
F
S
Y
H
P
N
C
F
S
N
A
I
E
R
E
K
V
L
HNMWAYPYKNK
K
V
V
H
Y
E
F
S
D
L
I
D
GDI
P
I
F
Y
N
NISKT
S
L
I
A
SDGCLVEDFYQES
A
L
N
R
C
L
N
K
I
N
D
LC
D
E
D
I
S
I
Q
T
V
W
L
E
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A
L
NIYNPY
K
Y
I
N
D
LKNQNS
N
K
Y
I
Y
T
G
L
E
L
N
G
K
I
I
Q
A
C
Q
K
I
E
K
K
I
F
K
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A
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F
N
KKTN
T
V
N
W
I
D
I
K
L
D
Q
D
W
N
V
G
I
L
-
N
N
N
---
M
YDG
L
P
--------
G
-
I
F
I
F
Y
V
A
L
K
Y
I
T
-----------
K
N
H
-
K
-
Y
D
Y
V
I
--
E
C
I
K
N
S
I
Y
T
I
P
S
-
E
D
I
L
S
A
F
F
G
K
G
S
------
L
I
Y
P
-
L
L
V
-
D
Y
R
L
N
N
D
I
N
S
L
N
V
A
V
E
I
A
D
MDWIHG---
H
N
S
-
I
I
K
V
L
L
L
L
S
E
-
I
T
EDE
K
Y
R
K
F
S
L
E
I
F
E
K
L
-
S
-
E
EPY
F
N
F
R
G
F
G
-
H
G
I
Y
S
Y
V
H
L
L
S
K
F
NRI
D
K
A
N
S
L
L
H
KIKNNSWCKGT
V
G
E
L
L
A
TD
I
N
K
T
I
EYKNKDCLCHG
N
A
G
T
L
E
G
L
I
Q
L
A
K
K
DPETY
Q
Y
K
K
N
K
L
I
S
Y
M
L
K
Y
F
E
K
N
NTLKVAGSEYLESLGFFVG
I
S
G
V
G
Y
E
L
L
R
N
L
DSEIPNALLFE
17
Fugue
48.75
21%
-164
* C7 *
2X5C
1
?
A:
[30-128]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
Q
E
Y
D
M
A
A
D
-
L
V
R
---
M
---
L
R
--------
G
-
L
G
V
F
M
H
A
K
C
P
R
C
G
A
-
E
G
----
S
V
S
I
V
-
E
-
T
K
N
-------
G
Y
K
Y
L
V
I
R
H
-
P
D
G
-------
G
T
------
H
T
V
P
----------
K
T
D
I
S
A
I
L
K
E
L
C
E
----------
V
K
K
-
D
L
E
Y
V
L
K
R
Y
K
-
E
Y
-----
E
E
E
G
G
V
K
F
C
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
47.35
15%
-193
- C6 -
3NA2
2
?
A:
[25-162]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
V
T
D
R
I
G
-
Q
M
I
L
E
M
--
F
---
R
T
--------
G
M
C
L
F
S
V
R
S
P
G
G
V
A
E
L
-
Y
G
G
E
AR
K
V
E
I
T
-
G
T
S
L
T
I
E
--
R
E
D
W
H
L
H
C
K
L
E
T
-
V
E
--
T
V
V
F
D
L
S
P
------
K
D
N
G
-
G
I
R
M
A
V
V
F
R
D
K
H
Q
A
P
V
L
R
A
A
W
L
----------
P
R
L
M
P
E
T
P
S
---
P
P
-
E
Q
-----
F
W
A
F
T
Q
R
Y
I
D
L
-
P
M
V
---
V
D
A
R
N
R
Q
-
L
V
F
P
G
-------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
47.00
17%
-158
- C7 -
1A8Y
-
?
?:
[127-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
---
L
---
I
E
--------
G
-----
E
R
E
L
Q
A
F
E
N
I
-
E
D
----
E
I
K
L
I
-
G
-
Y
F
K
N
K
DS
E
H
Y
K
A
F
K
E
A
A
E
E
-
F
H
P
Y
I
P
F
F
A
T
F
D
------
S
K
V
A
-
K
K
L
-
T
L
K
----
L
N
E
I
D
F
Y
E
A
F
M
----------
E
E
-----------
P
-
V
T
-----
I
P
D
K
P
N
S
E
E
E
I
-
V
-
N
---
F
V
E
E
H
R
R
-
S
-----------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
46.73
16%
-149
* C6 *
3J9Q
-
?
S:
[3-168]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
Q
T
L
T
N
T
N
L
-
F
I
D
---
G
---
V
S
FAGDVPSL
T
-
L
P
K
L
A
V
K
T
E
Q
Y
R
A
G
-
G
M
----
D
A
P
V
S
-
I
-
D
M
G
L
E
--
A
-
M
E
A
K
F
S
T
N
G
A
-
R
R
E
A
L
N
F
F
G
L
A
D
QSAFNG
V
F
R
G
-
S
F
K
-
G
Q
K
G
A
S
V
P
V
V
A
T
L
R
G
L
L
K
EVDPGDWKAG
E
K
A
-
E
F
K
Y
A
V
A
V
S
Y
-
Y
K
-----
L
E
V
D
G
R
E
V
Y
E
I
-
D
-
P
---
V
N
G
V
R
A
I
-
N
G
V
D
Q
L
AGMRNDLGL---------------------------------------------------------------------------------------------------------------------------
21
Fugue
46.02
14%
-158
- C6 -
4LQZ
2
?
A:
[13-143]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
L
Y
F
Q
G
Q
R
F
-
E
I
Q
Q
HN
E
---
T
I
--------
G
-
S
I
Y
F
S
A
D
Y
A
H
I
R
G
I
E
K
G
----
T
A
K
Y
F
I
D
-
K
V
G
S
K
--
R
Y
L
F
I
E
Y
I
P
D
N
V
-
L
N
C
K
P
D
F
W
K
T
L
K
------
Y
K
K
D
K
V
T
Y
-
Y
V
Y
L
I
E
N
L
---------------------
D
D
-
E
V
F
H
L
S
A
L
Q
D
M
N
R
-----
I
P
I
D
I
A
D
D
V
A
T
M
G
-
K
---
S
P
H
Q
N
D
R
M
T
L
K
L
N
-------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
45.48
17%
-207
- C5 -
2DNF
-
A:
[1-108]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
R
K
-
P
L
Q
---
E
---
P
C
--------
T
-
I
F
L
I
A
N
G
D
L
I
N
P
A
S
-
R
L
----
L
I
P
R
K
-
T
-
L
N
Q
W
D
--
H
V
L
Q
M
V
T
E
K
I
T
L
R
S
G
A
V
H
R
L
Y
T
L
E
G
------
K
L
V
E
-
S
G
A
-
E
L
E
N
G
Q
F
Y
V
A
V
-------------------------------------------
G
R
D
K
F
K
K
-
L
-
P
---
Y
G
E
L
L
F
D
-
S
G
P
S
S
G
------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
39.39
36%
-568
* C9 *
1WUU
1
GALK1_HUMAN
A:
[117-148]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
K
G
----
V
I
Q
Y
Y
-
P
-
A
A
P
L
P
--
G
F
S
A
V
V
V
S
S
V
P
L
-
G
G
G
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
36.72
30%
-382
- C3 -
2LZR
-
TATA_ECOLI
A:
[16-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-----
V
L
L
F
G
P
K
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_CBE
36.14
36%
-472
- C9 -
1WUU
1
GALK1_HUMAN
D:
[117-148]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
K
G
----
V
I
Q
Y
Y
-
P
-
A
A
P
L
P
--
G
F
S
A
V
V
V
S
S
V
P
L
-
G
G
G
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_CBE
35.76
36%
-435
- C9 -
1WUU
1
GALK1_HUMAN
C:
[117-148]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
K
G
----
V
I
Q
Y
Y
-
P
-
A
A
P
L
P
--
G
F
S
A
V
V
V
S
S
V
P
L
-
G
G
G
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_CBE
35.39
36%
-451
- C9 -
1WUU
1
GALK1_HUMAN
B:
[117-147]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
K
G
----
V
I
Q
Y
Y
-
P
-
A
A
P
L
P
--
G
F
S
A
V
V
V
S
S
V
P
L
-
G
G
G
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
34.83
37%
0
- C- -
2D2C
1
PETL_MASLA
E:
[1-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
G
A
V
F
Y
-
I
V
F
I
A
L
F
F
G
I
A
---------
V
G
-
I
I
F
-
A
I
K
S
I
K
L
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
24.27
20%
-456
- C1 -
2K1K
-
EPHA1_HUMAN
A:
[556-565]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
G
A
A
L
L
L
G
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
21.96
18%
-356
* C8 *
1RGX
-
RETN_MOUSE
A:
[6-19]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
I
-
D
-
E
---
A
I
D
K
K
I
K
-
Q
D
----------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
19.32
38%
-237
- C2 -
2LX0
-
?
A:
[6-13]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
E
V
-
I
A
G
L
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
18.23
27%
-114
- C8 -
3RKO
-
NUOK_ECOBD
K:
[63-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
A
I
S
L
A
A
A
E
A
-
S
I
G
L
A
L
L
L
Q
L
H
R
------
R
R
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
18.17
31%
-217
- C4 -
3LXU
-
TPP2_DROME
X:
[18-165]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
---
A
---
E
T
--------
G
-
V
L
N
F
L
Q
K
Y
P
E
Y
D
G
R
-
D
V
----
T
I
A
I
F
-
D
-
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
15.76
43%
-9
- C8 -
1Y32
-
HUNIN_HUMAN
A:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----------
A
P
R
-
G
F
S
C
L
L
L
L
T
S
E
I
D
-----
L
P
V
K
R
R
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
13.83
10%
-204
- C8 -
2AMN
-
A:
[4-23]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
W
P
L
-
V
I
R
---
T
---
V
I
--------
A
-
G
Y
N
L
Y
R
A
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------