@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08640: (2016-06-13 )
MYVGRDMSELNMVSKKDWKNSELAYFHHAFQQIMPYLNEEGQSKYRELTQEIEARGGMKRNEADYSHGTRVSYD
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..--...--....10.........20--------........----.30------...-----..---...--.40-----..--------..---....---50..-----------..-....60........70...-------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MY--VGR--
D
M
S
E
L
-
N
M
V
SKKDWKN---------S
E
L
A
Y
F
H
H
----
A
F
-------
Q
Q
I
-----
M
P
---
Y
LN--E
E
G
-----
Q
S
--------
K
Y
---
R
E
L
T
---
Q
E
I
E
-----------
A
R-GGMKRNEADYSHGTRVSYD-------------------
9
Fugue
57.44
25%
-51
- C2 -
4IWS
-
FDC_PSEAE
A:
[23-515]
-----------------------------------------------------------------------------------------------------M
N
R
S
A
L
D
F
R
H
F
V
D
H
L
R
R
Q
GD
L
V
D
V
HTEVDANL
E
I
G
A
I
T
R
R
V
Y
E
R
RA
P
A
P
L
F
HNIRDSLPG
A
R
V
L
G
APAGLRADRARAH
S
R
L
A
L
H
F
GLPEHSG
P
R
D
I
V
A
M
L
R
A
A
M
R
A
E
P
I
APRRLERGPVQE
N
V
W
L
GEQVDLTRFPVPLLHEQDGGRYFGTY
G
F
H
V
V
Q
T
PDGS
W
D
S
W
S
V
G
R
L
M
L
V
D
RN
T
L
A
G
P
T
I
PTQ
H
I
G
I
I
R
E
Q
W
R
R
L
GK
P
T
P
W
A
M
A
L
GAP
P
A
A
L
A
A
A
G
MPLPEGVSEAGYVGALVG
E
P
V
E
V
V
R
T
QTNGLWVPANTE
I
V
L
E
G
E
ISLDETALEGPMGEYHGYSFP
I
G
K
P
Q
P
L
F
H
V
H
A
L
S
F
R
DQ
P
I
L
P
I
C
VAGTPPE
E
N
H
T
I
W
G
T
M
I
S
A
Q
L
L
D
V
A
Q
N
A
GLPVDMVWCSYEAATC
W
A
V
L
S
I
D
V
Q
R
L
A
A
L
GTD
A
A
A
F
A
A
R
V
A
E
T
V
F
G
S
H
A
G
H
L
V
P
K
L
I
L
--
V
G
N
DI
D
V
T
E
I
-
D
Q
V
V
W
A
L
A
T
R
---------
A
H
P
L
H
D
H
F
----
A
F
-------
P
Q
I
RDFPM
V
P
---
Y
L
D
--
A
E
D
-----
K
A
--------
R
G
SGG
R
L
V
I
N
CL
Y
P
E
Q
-----------
F
A
-
G
Q
M
R
A
A
T
A
S
F
R
H
A
Y
P
T
A
L
R
R
R
V
E
E
R
W
SDYGF-------
14
Fugue
56.35
15%
-88
- C2 -
4XGC
-
?
C:
[1-676]
MQ
P
F
Y
E
E
Y
R
K
A
W
N
Q
I
N
D
H
I
A
D
L
Q
H
R
S
Y
A
R
T
L
E
Q
L
V
D
F
V
V
G
Q
A
E
RDE
V
L
P
T
A
A
L
LTGINQPDH
L
S
Q
F
T
A
L
T
Q
R
L
H
A
Q
RA
A
M
V
C
V
L
Q
SRDCAT
L
K
A
A
V
E
T
L
V
F
G
L
V
E
D
N
A
E
V
E
QLRRSQCT
M
K
Q
L
K
S
W
Y
T
N
N
FDSEQ
K
R
R
Q
L
V
V
I
L
PDFECFN
A
S
V
L
Q
D
L
I
L
I
L
S
A
H
CGSLP
F
V
L
V
L
GVATAM
T
A
V
H
G
T
L
P
Y
H
V
S
S
K
IR
L
R
V
F
Q
T
QA
A
P
T
G
L
N
E
V
L
D
K
VLLSPKYA
F
H
L
S
G
K
T
F
K
F
L
T
H
I
F
L
Y
YDFS
I
H
G
F
I
Q
G
F
K
Y
C
L
M
E
H
F
F
GGNAFALCTD
Y
S
K
A
L
G
R
I
K
Q
LT
H
E
D
M
E
T
I
R
R
LPS
F
R
P
Y
V
E
Q
IND
C
K
R
I
I
A
V
L
TD
D
D
Y
L
K
K
K
L
P
Q
L
L
R
D
C
L
L
H
F
L
L
F
R
C
S
L
E
F
L
T
E
L
V
G
D
LPRCPLGKL
R
R
E
L
Y
V
N
C
L
N
RAIIST
P
E
Y
K
E
C
L
Q
M
L
S
F
LSK
D
E
F
V
A
K
V
N
R
A
L
E
R
T
E
Q
F
L
V
E
EIAPLEL
G
E
A
C
T
A
V
L
R
P
K
L
E
A
I
R
L
A
V
D
E
VG
R
A
L
Q
K
T
L
Q
L
I
E
T
Q
IVQDHLRALQDAPPIHELFVFSD
I
A
T
V
R
R
N
I
I
GAP
R
A
A
L
H
T
A
L
--
N
N
P
--
H
F
P
D
L
-
S
V
V
Y
K
L
H
L
E
C
---------
G
R
M
I
N
L
F
D
----
W
L
-------
Q
A
F
-----
R
S
---
V
V
P
---
Q
I
-----
Q
A
--------
R
F
---
T
R
A
V
---
A
E
L
Q
-----------
F
L
-
G
Y
I
K
M
S
K
R
K
T
D
H
A
T
R
L
T
W
--------------------
6
PsiBlast_PDB
55.49
38%
-97
- C2 -
2Z1S
-
BGLB_PAEPO
A:
[78-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
G
F
L
H
Y
R
F
S
V
A
W
-------
P
R
I
-----
M
P
AAG
I
I
N
--
E
E
G
-----
L
L
--------
F
Y
---
E
H
L
L
---
D
E
I
E
-----------
L
A
-
G
-------------------------------------
19
HHSearch
54.44
21%
-320
- C2 -
2RPA
-
KTNA1_MOUSE
A:
[24-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
M
V
Y
Y
Q
G
----
V
L
-------
D
Q
M
-----
N
K
---
Y
L
Y
--
S
V
K
-----
D
T
H
L
R
Q
K
W
Q
Q
V
W
---
Q
E
I
N
---
V
E
A
K
----------------------------------------------------
3
PsiBlast_PDB
52.49
38%
-79
- C2 -
2O9R
-
BGLB_PAEPO
A:
[76-117]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
G
F
L
H
Y
R
F
S
V
A
W
-------
P
R
I
-----
M
P
AAG
I
I
N
--
E
E
G
-----
L
L
--------
F
Y
---
E
H
L
L
---
D
E
I
E
-----------
L
A
-
G
-------------------------------------
2
PsiBlast_PDB
52.07
38%
-92
- C2 -
2JIE
-
BGLB_PAEPO
A:
[78-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
G
F
L
H
Y
R
F
S
V
A
W
-------
P
R
I
-----
M
P
AAG
I
I
N
--
E
E
G
-----
L
L
--------
F
Y
---
E
H
L
L
---
D
E
I
E
-----------
L
A
-
G
-------------------------------------
4
PsiBlast_PDB
51.19
38%
-51
- C2 -
2O9P
-
BGLB_PAEPO
A:
[72-113]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
G
F
L
H
Y
R
F
S
V
A
W
-------
P
R
I
-----
M
P
AAG
I
I
N
--
E
E
G
-----
L
L
--------
F
Y
---
E
H
L
L
---
D
E
I
E
-----------
L
A
-
G
-------------------------------------
5
PsiBlast_PDB
50.82
38%
-75
- C2 -
2O9T
-
BGLB_PAEPO
A:
[78-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
G
F
L
H
Y
R
F
S
V
A
W
-------
P
R
I
-----
M
P
AAG
I
I
N
--
E
E
G
-----
L
L
--------
F
Y
---
E
H
L
L
---
D
E
I
E
-----------
L
A
-
G
-------------------------------------
8
PsiBlast_PDB
49.88
28%
-56
- C2 -
4F0E
1
PAR15_HUMAN
A:
[69-117]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
D
H
K
N
---------
N
E
R
L
L
F
H
G
----
T
D
-------
A
D
S
-----
V
P
---
Y
V
N
--
Q
H
G
-----
F
N
------------------------------------
R
-
S
C
A
G
K
N
A
V
S
Y
G
K
G
T
Y
F
A
V
D
-------------------
16
Fugue
47.14
19%
-29
- C2 -
2KSW
-
?
A:
[1-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
--
V
G
S
--
D
C
E
------
P
K
L
C
T
M
D
---------
L
V
P
H
C
F
L
N
----
P
E
-------
K
G
I
-----
V
V
---
V
H
G
--
G
C
A
-----
L
S
--------
K
Y
---
K
C
Q
N
---
P
N
H
E
-----------
K
L
-
G
Y
T
H
E
C
E
E
A
I
K
N
A
P
R
P
----------------------
7
PsiBlast_PDB
46.87
28%
-116
- C2 -
3BLJ
4
PAR15_HUMAN
A:
[90-138]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
D
H
K
N
---------
N
E
R
L
L
F
H
G
----
T
D
-------
A
D
S
-----
V
P
---
Y
V
N
--
Q
H
G
-----
F
N
------------------------------------
R
-
S
C
A
-----
S
Y
G
K
G
T
Y
F
A
V
D
-------------------
15
Fugue
45.90
12%
-60
- C2 -
1S12
2
?
A:
[1-94]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
--
K
V
T
--
V
T
N
S
F
-
F
E
V
T
G
H
A
P
D
K
---------
T
L
C
A
S
V
S
L
----
L
T
-------
Q
H
V
-----
A
N
---
F
L
K
--
A
E
K
-----
K
A
--------
K
I
---
K
K
E
S
---
G
Y
L
K
-----------
V
K
F
E
E
L
E
N
C
E
V
K
V
L
A
A
M
V
R
S
L
K
E
L
E
Q
K
F
P
SQ
I
R
V
E
V
I
D
N
G
S
22
HHSearch
43.72
9%
-134
- C2 -
3RH2
1
?
A:
[179-210]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
L
L
R
----
V
L
-------
M
I
F
-----
K
A
---
Y
S
T
--
P
D
S
-----
L
A
--------
N
F
---
D
R
L
E
---
Q
H
F
R
-----------
S
Q
---------------------------------------
12
Fugue
43.44
21%
-46
- C2 -
2KPO
-
?
A:
[1-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
L
L
Y
V
L
I
I
S
ND
K
K
L
I
E
--
E
A
R
--
K
M
A
E
K
A
N
L
E
L
R
T
V
K
T
E
---------
D
E
L
K
K
Y
L
E
----
E
F
RKESQ
N
I
K
V
L
-----
I
L
---
V
S
N
--
D
E
E
-----
L
D
--------
K
A
---
K
E
L
A
---
Q
K
M
E
I
D
V
R
T
R
K
V
TS
P
D
E
-
A
K
R
W
I
K
E
F
S
E
E
G
G
S
L
E
H
H
H
HHH----------------
1
PsiBlast_PDB
41.65
21%
31
- C2 -
1Z2I
1
?
A:
[26-100]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
--
V
G
T
--
D
E
E
T
A
-
D
A
A
T
R
A
M
M
H
G
---------
T
R
L
G
V
D
S
H
----
G
V
-------
R
L
L
-----
A
H
---
Y
V
T
A
L
E
G
G
-----
R
L
--------
N
R
---
R
P
Q
I
---
S
R
V
S
-----------
G
F
-
G
A
V
E
T
I
D
A
D
H
A
H
G
A
R
A
T
Y
--------------------
31
HHSearch
41.21
10%
-74
- C2 -
3I71
2
EUTK_ECOLI
A:
[20-59]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
-------
G
E
V
-----
A
A
---
H
F
G
--
W
P
------
L
E
--------
K
A
---
R
N
A
L
---
E
Q
L
F
-----------
S
A
-
G
T
L
R
K
R
S
S
R
Y
R
L
K
P
------------------------
30
HHSearch
40.00
13%
-158
- C2 -
4XS5
-
?
A:
[51-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
---
S
L
D
--
A
T
G
-----
I
T
--------
T
L
---
K
K
V
N
---
Y
L
C
A
-----------
N
D
-
L
G
------------------------------------
33
HHSearch
39.82
24%
0
- C- -
1PP9
1
QCR7_BOVIN
F:
[74-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
P
K
E
Q
W
T
K
---------
Y
E
E
--------------------
D
-----
K
S
---
Y
L
E
-----------
P
--------
Y
L
---
K
E
V
I
---
R
E
R
K
-----------
E
R
-
E
E
------------------------------------
18
Fugue
39.13
17%
-71
- C2 -
1P68
-
?
A:
[1-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
GK
L
N
D
--
L
L
E
D
L
-
Q
E
V
L
K
N
L
H
K
N
WHGGKDNL
H
D
V
D
N
H
L
Q
N
----
V
I
-------
E
D
I
-----
H
D
---
F
M
Q
--
G
G
G
SGGKL
Q
E
--------
M
M
---
K
E
F
Q
---
Q
V
L
D
-----------
E
L
-
N
N
H
L
Q
G
G
K
H
T
V
H
H
I
E
Q
N
I
K
E
I
F
H
H
L
E
E
L
V
H
R-------
34
HHSearch
38.81
13%
-129
- C2 -
2KA5
-
Y1081_THEMA
A:
[63-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
S
I
D
--
S
F
S
-----
L
G
--------
V
I
---
V
N
I
L
---
K
S
I
S
-----------
S
S
-
G
G
------------------------------------