@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08740: (2016-06-13 )
MAKYSSKINKIRTFALSLVFVGFIIMYIGIFFKESVLLSSLFMILGLLSIGLSTVVYFWIGMLSTKAVRVICPGCDKETKVLGVVDMCMHCREPLTLDKGLEGKEFDESYNKKKMSK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------.........10........20........30........40........50..--..---....60........70....-------.-.---.-.--80.--.---------.----......90........100.......110.....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------MA
K
Y
S
S
K
I
N
K
I
R
T
F
A
L
S
L
V
F
V
G
F
I
I
M
Y
I
G
I
F
F
K
E
S
V
L
L
S
S
L
F
M
I
L
G
L
L
S
I
G
L
S
--
T
V
---
V
Y
F
W
I
G
M
LST
K
A
V
R
V
I
CPGC-------D-K---
E
-
T
--
K
-
V
--
L
---------
G
----
V
V
D
M
C
M
HCREPLTLDKGLEG
K
E
F
D
E
S
Y
N
K
KKMSK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
84.72
15%
0
- C- -
2MXY
-
HNRPC_HUMAN
A:
[1-0]
------------------------------------------------------------------------------------
A
S
N
V
T
N
K
T
D
P
R
S
M
N
--
S
R
V
F
I
G
N
L
N
T
L
V
V
K
K
S
D
V
E
A
I
F
S
K
Y
G
K
I
V
G
C
S
V
H
K
G
---------
F
A
F
V
Q
Y
V
N
E
R
N
A
R
A
A
V
A
G
E
-------
D
-
G
---
R
-
M
--
I
-
A
--
G
---------
Q
----
V
L
D
I
N
L
A
A
E
P
K
V
N
R
G
K
A
G
V
K
R
S
A
A
E
M
Y
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
63.63
17%
-249
- C5 -
4US3
13
?
A:
[10-450]
GREQWASRL
G
F
I
L
A
A
M
G
S
A
VGLGNI
W
R
F
S
Y
V
T
G
E
N
GG
A
A
F
L
L
V
Y
L
G
F
I
A
LI
G
I
P
I
V
L
A
E
F
T
I
G
R
R
A
QSD
A
V
G
S
F
E
K
L
APGKPWK
V
A
G
L
M
G
V
A
A
G
F
L
I
L
S
F
Y
G
V
I
A
G
W
I
L
F
Y
L
F
N
Y
I
T
G
Q
L
W
S
A
P
A
E
G
F
G
G
F
F
E
G
F
I
A
NP
T
L
---
P
L
F
W
Q
A
L
F
M
I
A
T
I
W
I
V
A
I
G
V
KKGIERS
N
-
K
---
I
-
L
--
M
-
P
--
L
---------
L
----
G
V
L
L
I
A
L
A
I
Y
S
L
T
L
G
G
A
K
E
G
L
A
F
L
F
S
P
D
W
S
A
L
K
D
P
G
V
Y
L
A
A
I
S
Q
A
F
F
T
L
SLGMG
A
L
I
T
Y
G
S
Y
VSKDSR
L
P
G
A
A
V
S
V
A
G
L
D
T
A
F
A
I
I
A
G
I
M
I
F
P
A
V
F
A
L
GLSPSGGPG
L
V
F
V
V
L
P
D
I
F
D
S
IRL
G
P
I
V
G
I
A
F
F
I
L
L
G
A
A
A
L
S
S
A
V
S
L
L
E
V
P
V
A
Y
F
M
R
K
F
DWS
R
K
Q
A
A
I
T
L
G
V
I
I
T
L
L
G
I
P
S
S
L
S
F
GVLGEVTIIPGLN
I
F
D
S
V
D
F
I
A
SSV
F
L
P
L
G
G
M
I
I
A
L
F
I
G
WGWK
T
S
D
A
L
A
E
S
DLTDS
V
W
G
K
L
W
I
L
S
L
R
F
I
A
P
I
A
I
L
I
V
F
L
S
A
F
1
PsiBlast_PDB
63.12
23%
-189
- C10 -
4WRT
-
?
B:
[421-486]
------------------------------------------------------------------------------------------------------------------------
M
F
N
M
L
S
T
V
L
G
V
A
A
L
G
I
K
--
N
I
GNK
E
Y
L
W
D
G
L
Q
S
S
D
D
F
A
L
F
V
N
A
K
-------
D
-
E
---
E
-
T
--
C
-
M
--
E
---------
G
----
I
N
D
F
Y
R
T
C
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
62.49
19%
-151
- C4 -
2JZ8
1
?
A:
[1-87]
------------------------------------------------------------------------------------
M
A
D
Y
N
I
P
H
F
Q
N
D
L
--------
G
Y
K
I
I
E
I
G
---------
V
K
E
F
M
C
V
G
A
T
Q
P
F
D
H
--
P
H
---
I
F
I
D
M
G
----
S
T
D
E
K
I
C
P
Y
C
-------
S
-
T
---
L
-
Y
--
R
-
Y
--
D
---------
P
----
S
L
S
Y
N
Q
T
N
P
T
G
C
L
Y
N
P
K
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.31
23%
-172
- C10 -
5FMZ
-
?
B:
[421-504]
------------------------------------------------------------------------------------------------------------------------
M
F
N
M
L
S
T
V
L
G
V
A
A
L
G
I
K
--
N
I
GNK
E
Y
L
W
D
G
L
Q
S
S
D
D
F
A
L
F
V
N
A
K
-------
D
-
E
---
E
-
T
--
C
-
M
--
E
---------
G
----
I
N
D
F
Y
R
T
C
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
61.91
23%
-176
- C10 -
4WSA
-
?
B:
[421-495]
------------------------------------------------------------------------------------------------------------------------
M
F
N
M
L
S
T
V
L
G
V
A
A
L
G
I
K
--
N
I
GNK
E
Y
L
W
D
G
L
Q
S
S
D
D
F
A
L
F
V
N
A
K
-------
D
-
E
---
E
-
T
--
C
-
M
--
E
---------
G
----
I
N
D
F
Y
R
T
C
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
60.54
20%
-78
- C6 -
2KGO
1
YBII_ECOLI
A:
[21-108]
------------------------------------------------------------------------------------
M
A
S
G
W
A
N
D
D
A
V
N
E
Q
I
------------------
N
S
T
I
E
D
A
I
A
R
A
R
G
E
I
P
R
G
E
S
--
L
D
---
E
C
E
E
C
G
A
P
I
P
Q
A
R
R
E
A
I
P
G
----------------------------------------
V
R
L
C
I
H
C
Q
Q
E
K
D
L
Q
K
P
-
A
Y
T
G
Y
N
R
R
G
S
K
D
S
Q
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
55.10
16%
-80
- C9 -
2JRP
2
?
A:
[1-81]
------------------------------------------------------------------------------------
M
E
I
T
C
P
V
C
H
H
------------------------------------
A
L
E
R
N
G
D
--
T
A
---
H
C
E
T
C
A
--
K
D
F
S
L
Q
A
L
C
P
D
C
-------
R
-
Q
PL
Q
V
-
L
--
K
-
A
--
C
---------
G
----
A
V
D
Y
F
C
Q
N
G
H
G
L
I
S
K
K
R
V
N
F
V
I
S
D
Q
L
E
H
H
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
47.01
23%
-125
* C9 *
2JRP
1
?
A:
[31-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
C
P
D
C
-------
R
-
Q
---
P
-
L
--
Q
-
V
--
L
---------
K
A
CG
A
V
D
Y
F
C
Q
N
G
H
G
L
I
S
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
46.70
23%
-98
- C8 -
3WWL
1
LYSW_THET8
A:
[3-37]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
C
P
E
C
-------
G
-
A
---
E
-
L
--
R
-
L
--
E
---------
N
P
E
L
G
E
L
V
V
C
E
D
C
G
A
E
L
E
V
V
G
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
43.95
24%
-97
- C8 -
2LCQ
1
NOB1_PYRHO
A:
[129-161]
----------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
W
R
Y
V
C
I
G
C
-------
G
-
R
---
K
-
F
--
S
-
T
--
L
---------
P
----
P
G
G
V
C
P
D
C
G
S
K
V
K
L
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
41.40
19%
-56
- C8 -
1VD4
1
A:
[11-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
A
S
F
K
C
P
V
C
-------
S
-
S
---
T
-
F
--
T
-
D
--
L
E
A
N
Q
L
FDPM
T
----
G
T
F
R
C
T
F
C
H
T
E
V
E
E
D
E
S
A
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
41.35
16%
-141
* C8 *
2K4X
1
RS27A_THEAC
A:
[16-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
H
R
F
C
P
R
C
-------
G
-
P
---
G
-
V
--
F
-
L
AE
H
---------
A
----
D
R
Y
S
C
G
R
C
G
Y
T
E
F
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
39.62
21%
-123
- C8 -
1PFT
1
TF2B_PYRFU
A:
[4-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
K
V
C
P
A
C
-------
E
S
A
---
E
-
L
--
I
-
Y
D
P
E
---------
R
----
G
E
I
V
C
A
K
C
G
Y
V
I
E
E
N
I
I
D
M
G
P
E
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
39.33
22%
-80
- C8 -
1DL6
1
TF2B_HUMAN
A:
[8-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
P
R
V
T
C
P
N
H
-------
P
-
D
---
A
I
L
V
E
D
Y
R
--
A
---------
G
----
D
-
M
I
C
P
E
C
G
L
V
V
G
D
R
V
I
D
V
G
S
E
W
R
T
F
S
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
38.76
16%
-131
- C8 -
2HF1
1
Y3345_CHRVO
A:
[6-39]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
I
L
V
C
P
L
C
-------
K
-
G
---
P
-
L
--
V
-
F
--
D
KS-------
K
----
D
E
L
I
C
K
G
D
R
L
A
F
P
I
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
37.13
27%
26
- C1 -
2JNE
1
YFGJ_ECOLI
A:
[32-42]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
H
C
P
Q
C
-------
Q
-
H
---
V
-
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
35.70
19%
-113
- C8 -
1TWF
1
RPAB4_YEAST
L:
[27-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Y
I
C
A
E
C
-------
S
-
S
---
K
-
L
--
S
-
L
--
S
R--------
T
----
D
A
V
R
C
K
D
C
G
H
R
I
L
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
35.42
18%
-71
- C8 -
4QIW
-
RPOP_THEKO
P:
[8-40]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
C
A
K
C
-------
G
-
K
---
E
-
V
--
E
-
L
--
D
---------
L
ATA-
R
E
V
R
C
P
Y
C
G
S
K
I
L
Y
K
P
R
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
34.96
19%
-82
- C8 -
5FLM
1
RPAB4_BOVIN
L:
[15-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Y
I
C
G
E
C
-------
H
-
T
---
E
-
N
--
E
-
I
--
K
S
--------
R
----
D
P
I
R
C
R
E
C
G
Y
R
I
M
Y
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------