@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08950: (2016-06-14 )
MDVVEKLVINGSGSSKGGTFQSVEINGSGTVAGDVECDTFSFNGNGKADGSVKAKAVTISGSGKIHGDVEAESIRMNGTGFIQGEVSAKQLKIAGSSTFGGTVKADGIDISGKAVMEADCETETFQSEGKCKISGLLNADQVIIKLSAGESYAREIGCRHLQVTCRKGMLTLLRLMPQPVLTAELIEGDVIELTNTKAKTVRGNKVIIGPDCQIETVEYSGDYTCDPSASVETSTKL
Atome Classification :
(20 SA)
-----------.........10.........20........30..-......-.40....---....50....-....-60....---------------....70......-----...80.-.......90........100------......----------...110....-...120.-------------------..---....130.......140...-----------.-------------...150...-------------------------..-...160--.......----.170----------.....-----------....180.----.-.....190--.....------------...200--------------........210...-..-------------..--220......----.230.....---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------MD
V
V
E
K
L
V
IN-GSGSSKGG
T
F
Q
S
V
E
INGSG
T
-
V
A
-
G
D
V
E
C
D
-
T
F
S
FNGN---GKADG
S
V
K
A
K
-
A
V
T
I-SGS
G
K
I
---------------
H
G
D
V
E
-
A
E
S
I
R
M-----NG
T
G
F
I
-
Q
GEVS
A
K
Q
L
K
I
AGSSTFG--------
G
T
V
K
AD----------
G
I
DISG
K
A
V
M
-EADCETE-------------------TF---QSEG
K
C
K
I
SGLLNA
D
Q
V
I
I
K
-----------L-------------SAG
E
S
-
Y
A
R
-------------------------
E
I-GC
R
H
L
---
Q
V
T
C
R
K
G
----
M
L
------------
T
L
L
R
L-----------MPQPV
L
T
A
----
E
-LIEG
D
V
I
---
E
LTNT------------K
A
K
TV---------------RG
N
K
V
I
IGPDC
Q
I
E
-
T
V
-------------
E
Y--SGDYTCDPS----ASVETSTKL---------------------------
36
Fugue
54.74
18%
-50
- C11 -
3RJD
7
FCGR1_HUMAN
A:
[1-262]
----------------
K
A
V
I
T
-
L
Q
P
P
W
-
V
S
V
F
Q
E
E
T
V
T
L
H
C
E
-
V
L
-
H
L
P
G
S
S
-
S
T
Q
W
F
L
N
---
G
T
A
T
Q
T
S
T
P
S
-
Y
R
I
T
-
S
A
S
V
N
D
---------------
S
G
E
Y
R
-
C
Q
R
G
L
S
-----
G
R
S
D
P
I
-
Q
L
E
I
H
R
G
W
L
L
L
Q
V
S
S
R
----------
V
F
T
E
G
E
----------
P
L
A
L
R
C
H
A
W
K
-
D
K
L
V
Y
N
V
-------------------
L
Y
---
Y
R
N
G
K
A
F
K
F
F
H
W
N
S
N
L
T
I
L
K
-----------
T
-------------
N
I
S
H
N
---
G
-------------------------
T
Y
-
H
C
S
G
M
G
K
H
R
Y
T
S
A
G
I
----
S
V
------------
T
V
K
E
L
-----------
F
P
A
P
V
L
N
A
SVTS
P
-
L
L
E
G
N
L
V
---
T
L
S
C
E
------------
T
K
L
L
L
---------------
Q
L
Y
F
S
F
Y
M
G
S
K
T
L
R
-
G
R
NTSSEYQILTARR
E
D
--
S
G
L
Y
W
C
E
A
A
----
T
E
D
G
N
V
L
K
R
S
P
E
L
E
L
Q
V
L
G-----------------
30
Fugue
54.11
22%
-37
* C11 *
4W4O
13
FCGR1_HUMAN
C:
[6-267]
----------------
K
A
V
I
K
-
L
Q
P
P
W
V
-
S
V
F
Q
E
E
S
V
T
L
H
C
E
-
V
P
-
G
S
S
S
T
Q
-
W
F
L
N
G
T
A
I--
Q
T
S
T
P
T
Y
H
I
T
-
S
A
S
E
-
D
D
S
G
E
Y
---------------
R
C
Q
R
G
-
L
S
G
R
---------
S
D
P
I
-
Q
L
E
V
H
R
G
W
L
L
L
Q
V
S
S
R
----------
V
L
T
E
G
E
----------
P
L
A
L
R
C
H
A
W
K
-
D
K
L
V
Y
N
V
-------------------
L
Y
---
Y
R
N
G
K
A
F
K
F
F
H
W
N
S
N
L
T
I
L
K
-----------
T
-------------
N
M
S
H
S
G
T
Y
H
-------------------------
C
S
-
G
M
G
K
H
---
R
Y
T
S
A
G
I
----
S
V
------------
T
V
K
E
L
-----------
F
P
A
P
V
L
T
A
SVTS
P
-
L
L
E
G
T
P
V
---
T
L
S
C
E
T
K
L
LLQRPG
L
Q
L
Y
F
S
F
Y
---------------
M
G
S
K
T
L
R
G
R
D
T
S
S
E
-
Y
Q
ILTARR-------
E
D
--
S
G
L
Y
W
C
E
A
A
T
EDG
N
V
L
K
R
S
P
E
L
E
L
Q
V
L
G---------------------
28
Fugue
45.48
24%
-74
- C9 -
2N3D
-
?
A:
[37-139]
--------------
K
V
A
S
L
L
S
-
A
D
L
T
I
E
G
G
V
T
G
E
G
E
L
Q
I
D
G
V
-
V
K
-
G
D
V
R
V
G
-
R
L
T
V
G
E
T
---
G
H
V
E
G
S
V
Y
A
E
-
A
V
E
V
-
R
G
--
R
V
---------------
V
G
A
I
T
-
S
K
Q
V
R
L
-----
Y
G
T
S
Y
V
-
D
G
D
I
T
H
E
Q
L
A
M
E
T
G
A
F
F
Q
--------
G
R
S
L
K
F
----------
Q
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
42.90
20%
-104
- C9 -
2N3D
-
?
A:
[40-134]
----------------------------------
S
L
L
S
A
D
L
T
-
I
E
-
G
G
V
T
G
E
G
E
L
Q
I
D
G
-----
V
V
K
G
D
V
R
V
G
-
R
L
T
V
-
G
E
T
G
H
V
---------------
E
G
S
V
Y
-
A
E
A
V
E
V
-----
R
G
R
--------------------
V
V
--------
G
A
I
T
S
K
----------
Q
V
R
L
Y
G
T
S
Y
V
-
D
G
D
I
T
H
E
-------------------
Q
L
---
A
M
E
T
G
A
F
F
Q
G
R
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
40.97
29%
-112
* C9 *
2N3D
-
?
A:
[57-135]
---------------------------------
E
L
Q
I
D
G
--
V
-
V
K
-
G
D
V
R
V
G
-
R
L
T
V
G
E
T
---
G
H
V
E
G
S
V
Y
A
E
-
A
V
E
V
-
R
G
R
--
V
---------------
V
G
A
I
T
-
S
K
Q
V
R
L
-----
Y
G
T
S
Y
V
-
D
G
D
I
T
H
E
Q
L
A
M
E
T
G
A
F
F
Q
--------
G
R
S
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
40.18
23%
-63
- C4 -
4Q98
1
FIMA_PORGI
A:
[9-365]
--------VVE
T
N
A
T
V
S
F
I
I
K
S
G
E
S
R
A
V
G
D
D
L
T
D
A
K
I
T
K
L
T
A
M
V
Y
A
G
Q
V
Q
E
G
-
I
K
T
V
E
E
D
---
G
---
G
V
L
K
V
E
-
G
I
P
C
K
S
G
A
N
R
V
L
V
V
V
A
NHNYELTGKS
L
N
E
V
E
-
A
L
T
T
S
L
T
A
E
N
Q
N
A
K
N
L
I
M
T
G
K
S
A
A
F
T
I
K
-
P
G
S
N
H
Y
G
YPGGTASD
N
L
V
S
A
G
T
P
L
A
V
T
R
V
H
A
G
I
S
F
A
G
V
E
V
N
M
A
T
Q
Y
Q
N
Y
-------------------
Y
S
---
F
K
P
A
D
A
K
I
A
A
L
V
A
K
K
D
S
K
I
F
GNSLVSNTN
A
Y
L
Y
GVQTPAGLYTPD
A
A
G
E
T
-
Y
E
L
-------------------------
E
----
A
S
L
---
N
T
N
Y
A
V
G
A
G
F
Y
V
L
E
S
K
YDASN
E
L
R
P
T
I
L
C
I
Y
G
K
LLDKDGNP
L
T
E
P
A
L
T
D
----
A
-
I
N
A
G
F
C
D
---
G
D
G
T
T
------------
Y
Y
P
V
L
VNYDGNG
Y
I
Y
S
GAIT
Q
G
Q
N
K
I
V
R
N
N
H
Y
K
I
-
S
L
-------------
N
I
--
T
G
P
G
T
N
T
P
E
----
N
P
Q
P
V
Q
A
N
L
N
V
T
C
Q
V
T
P
W
V
VVNQ-------------
1
PsiBlast_PDB
37.27
29%
-104
- C9 -
2N3D
-
?
A:
[57-132]
-----------------------------------
E
L
Q
I
D
G
V
-
V
K
-
G
D
V
R
V
G
-
R
L
T
V
G
E
T
---
G
H
V
E
G
S
V
Y
A
E
-
A
V
E
V
---
R
G
R
V
---------------
V
G
A
I
T
-
S
K
Q
V
R
L
-----
Y
G
T
S
Y
V
-
D
G
D
I
T
H
E
Q
L
A
M
E
T
G
A
F
F
Q
--------
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
35.79
16%
-3
- C8 -
1OSP
-
OSPA_BORBU
O:
[23-273]
SLDEKNSVSVD
L
P
G
E
M
K
V
L
V
S
-
K
E
K
N
K
D
G
K
Y
D
L
I
A
T
V
D
K
-------
L
E
L
K
G
T
-
S
D
K
N
N
G
S
---
G
V
L
E
G
V
K
A
D
K
C
K
V
K
L
-
T
I
S
D
D
L
----------------
G
Q
T
T
-
L
E
V
F
K
E
-----
D
G
K
T
L
V
-
S
K
K
V
T
S
K
D
-----
K
S
S
T
E
--------
E
K
F
N
E
K
----------
G
-
E
V
S
E
K
I
I
T
-
R
A
D
G
T
R
L
-------------------
E
Y
TGI
K
S
D
G
S
G
K
A
K
E
V
L
K
G
Y
V
L
E
G
T
-----------
L
-------------
T
A
E
K
T
-
T
L
V
-------------------------
V
K
E
G
T
V
T
L
---
S
K
N
I
S
K
S
----
G
E
------------
V
S
V
E
L
-----------
N
D
T
D
S
S
A
A
----
T
-
K
K
T
A
A
W
N
---
S
G
T
S
T
LTI---------
T
V
N
S
K
---------------
K
T
K
D
L
V
F
T
K
E
N
T
I
T
-
V
Q
-------------
Q
Y
DS
N
G
T
K
L
E
G
S
A
----
V
E
I
T
K
L
D
E
I
KNALK----------------------
12
PsiBlast_PDB
35.30
33%
-
- C10 -
1EPS
-
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
34.09
11%
-96
* C8 *
2F9C
3
?
A:
[3-322]
-------K
Y
R
L
S
E
G
P
R
A
F
T
Y
Q
-
V
D
G
E
K
K
S
V
L
L
R
Q
V
I
A
V
T
D
F
N
-
D
V
-
K
A
G
T
S
G
-
G
W
V
D
A
D
N
VLS
Q
Q
G
D
C
W
I
Y
D
E
-
N
A
M
A
-
F
A
G
T
E
I
---------------
T
G
N
A
R
I
T
Q
P
C
T
L
-----
Y
N
N
V
R
I
-
G
D
N
V
W
I
D
R
A
D
I
S
D
G
A
R
I
S
--------
D
N
V
T
I
Q
----------
S
S
S
V
R
E
E
C
A
I
-
Y
G
D
A
R
V
L
NQ
S
E
I
L
AIQGLTHEHAQ
I
L
Q
I
---
Y
D
R
A
T
V
N
H
S
R
I
V
H
Q
V
Q
L
Y
G
N
-----------
A
-------------
T
I
T
H
A
-
F
I
E
HR
A
E
V
F
D
F
A
L
I
E
G
D
KD
N
N
V
W
I
C
D
C
A
K
V
-
Y
-
G
H
A
---
R
V
I
A
G
T
E
----
E
D
------------
A
I
P
T
L
-----------
R
Y
S
S
Q
V
A
E
----
H
A
L
I
E
G
N
C
V
L
K
H
H
V
L
V
G
------------
G
H
A
E
V
---------------
R
G
G
P
I
L
L
D
D
R
V
L
I
E
G
H
A
-------------
C
I
--
Q
G
E
I
L
I
E
R
Q
----
V
E
I
S
G
R
A
A
V
I
A
FDD
N
T
I
H
L
R
G
P
K
V
I
N
G
EDRITRTPL
25
HHSearch
32.95
0%
-962
- C1 -
3PET
1
?
A:
[106-112]
--------------------------------------------------------------------
G
L
T
T
D
-
N
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
30.07
17%
-466
- C3 -
4OPW
-
?
A:
[216-227]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
-
N
I
-------------
R
Y
--
K
G
P
T
A
V
-------------------------------------------
20
PsiBlast_PDB
28.79
33%
-7
- C10 -
3FK1
-
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
28.35
33%
-4
- C10 -
2AAY
-
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
28.25
33%
3
- C10 -
1X8T
-
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
28.20
33%
2
- C10 -
1Q36
1
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
28.11
33%
9
- C10 -
2QFU
-
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
28.00
33%
7
- C10 -
1X8R
1
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
27.97
33%
-6
- C10 -
2PQ9
3
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
27.95
33%
-2
* C10 *
3FK0
-
AROA_ECOLI
A:
[229-273]
-----------------------------------------------------------------------------------------------------------
Q
S
Y
Q
S
-----
P
G
T
Y
L
V
-
E
G
D
A
S
S
A
S
Y
F
L
A
A
A
A
I
K
G
--------
G
T
V
K
V
T
----------
G
I
---
G
R
N
S
M
-
Q
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------