@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu10490: (2016-06-16 )
MKKRFWFLAGVVSVVLAIQVKNAVFIDYKVEGVSMNPTFQEGNELLVNKFSHRFKTIHRFDIVLFKGPDHKVLIKRVIGLPGETIKYKDDQLYVNGKQVAEPFLKHLKSVSAGSHVTGDFSLKDVTGTSKVPKGKYFVVGDNRIYSFDSRHFGPIREKNIVGVISDAE
Atome Classification :
(20 SA)
.........10........20........30........40........50..------------..----------...------------.60.......-.--70..--......80......-------------.-.--90....---------------------------------.....-----100--.----.--...--------...---------------.110--..-.---------------..---.--------.-.-----120-----------------.-.--.-...------------------------...130--.........140.......150.......160......---------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MK
K
R
F
W
F
L
A
G
V
V
S
V
V
L
A
I
Q
VK
N
A
V
F
I
D
Y
K
V
EGVSMNPTFQEG
N
E
L
L
V
N
K
F
S
H
R
------------
F
K
----------
T
I
H
------------
R
F
D
I
V
L
F
KGP-
D
--
H
K
V
L
--
I
K
R
V
IGLPGE
T
I
K
Y-------------K-D--D-
Q
L
Y
V---------------------------------N
G
K
Q
V
-----
A
----
E
----
P
--
F
L
K
--------
H
L
K
---------------
S
VS---AG-S---------------
H
V
---T--------G-
D
-----
F
-------------------
S
-
L
--K-DVT------------------------GTSK----VPKG
K
Y
F
V
V
GD
N
R
I
Y
SFDSRHFGPIREK
N
I
V
G
V
ISDAE---------------
25
HHSearch
92.27
31%
0
- C- -
1B12
1
LEP_ECOLI
A:
[2-232]
--------------------
R
S
F
I
Y
E
P
F
Q
I
P
S
G
S
M
M
P
T
L
L
I
G
D
F
I
L
V
E
K
F
A
Y
G
I
K
D
PIY
Q
K
T
L
I
E
T
G
----------
H
P
K
------------
R
G
D
I
V
V
F
K
Y
P
-
E
DP
K
L
D
Y
--
I
K
R
A
V
G
L
P
G
D
K
V
T
Y
-------------
D
-
P
VS
K
-
E
L
T
I
---------------------------------
Q
P
G
C
S
SGQAC
E
----
N
ALP
V
T
--
Y
S
N
--------
V
E
P
SD
F
V
Q
T
F
S
RRNGGEA
T
S
G
FFE
V
P
-
K
N
E
T
K
E
N
G
I
R
L
S
E
R
K
E
T
L
GD
V
T
H
R
I
L
T
VPI
A
Q
D
QVGMY
Y
-------------------
Q
Q
P
--
G
-
Q
Q
L
------------------------
A
T
W
I
----
V
P
P
G
Q
Y
F
M
M
G
D
N
R
D
N
S
A
D
S
R
Y
W
G
F
V
P
E
A
N
L
V
G
R
A
T
A
I
----------------
4
PsiBlast_PDB
74.65
40%
-70
- C10 -
4WVJ
-
MALE_ECO57
A:
[376-522]
----------------------
A
I
V
T
P
Y
T
I
K
G
E
S
M
D
P
T
L
K
D
G
E
R
V
A
V
N
I
V
G
Y
K
------------
T
G
-----------
L
E
------------
K
G
N
V
V
V
F
H
A
N
-
K
--
N
D
D
Y
--
V
K
R
V
I
G
V
P
G
D
K
V
E
Y
-------------
K
-
N
--
D
-
T
L
Y
V
---------------------------------
N
G
K
K
Q
-----
D
----
E
----
P
--
Y
L
N
--------
Y
N
L
---------------
K
H
K
---
Q
G
-
D
---------------
Y
I
---
T
--------
G
-
T
-----
F
-------------------
Q
-
V
--
K
-
D
L
P
------------------------
N
A
N
P
KSNV
I
P
K
G
K
Y
L
V
L
G
D
N
R
E
V
S
K
D
S
R
A
F
G
L
I
D
E
D
Q
I
V
G
K
V
S
------------------
5
PsiBlast_PDB
73.99
39%
-70
- C10 -
4WVG
-
MALE_ECO57
A:
[376-522]
----------------------
A
I
V
T
P
Y
T
I
K
G
E
A
M
D
P
T
L
K
D
G
E
R
V
A
V
N
I
V
G
Y
K
------------
T
G
-----------
L
E
------------
K
G
N
V
V
V
F
H
A
N
----
N
D
D
Y
--
V
K
R
V
I
G
V
P
G
D
K
V
E
Y
-------------
K
-
N
--
D
-
T
L
Y
V
---------------------------------
N
G
K
K
Q
-----
D
----
E
----
P
--
Y
L
N
--------
Y
N
L
---------------
K
H
K
---
Q
G
-
D
---------------
Y
I
---
T
--------
G
-
T
-----
F
-------------------
Q
-
V
--
K
-
D
L
P
------------------------
N
A
N
P
KSNV
I
P
K
G
K
Y
L
V
L
G
D
N
R
E
V
S
K
D
S
R
A
F
G
L
I
D
E
D
Q
I
V
G
K
V
S
------------------
2
PsiBlast_PDB
73.54
40%
-71
- C10 -
4WVH
-
MALE_ECOLI
A:
[376-522]
----------------------
A
I
V
T
P
Y
T
I
K
G
E
S
M
D
P
T
L
K
D
G
E
R
V
A
V
N
I
V
G
Y
K
------------
T
G
-----------
L
E
------------
K
G
N
V
V
V
F
H
A
N
-
K
--
N
D
D
Y
--
V
K
R
V
I
G
V
P
G
D
K
V
E
Y
-------------
K
-
N
--
D
-
T
L
Y
V
---------------------------------
N
G
K
K
Q
-----
D
----
E
----
P
--
Y
L
N
--------
Y
N
L
---------------
K
H
K
---
Q
G
-
D
---------------
Y
I
---
T
--------
G
-
T
-----
F
-------------------
Q
-
V
--
K
-
D
L
P
------------------------
N
A
N
P
KSNV
I
P
K
G
K
Y
L
V
L
G
D
N
R
E
V
S
K
D
S
R
A
F
G
L
I
D
E
D
Q
I
V
G
K
V
S
------------------
3
PsiBlast_PDB
73.38
40%
-73
- C10 -
4WVI
-
MALE_ECO57
A:
[376-522]
----------------------
A
I
V
T
P
Y
T
I
K
G
E
S
M
D
P
T
L
K
D
G
E
R
V
A
V
N
I
V
G
Y
K
------------
T
G
-----------
L
E
------------
K
G
N
V
V
V
F
H
A
N
-
K
--
N
D
D
Y
--
V
K
R
V
I
G
V
P
G
D
K
V
E
Y
-------------
K
-
N
--
D
-
T
L
Y
V
---------------------------------
N
G
K
K
Q
-----
D
----
E
----
P
--
Y
L
N
--------
Y
N
L
---------------
K
H
K
---
Q
G
-
D
---------------
Y
I
---
T
--------
G
-
T
-----
F
-------------------
Q
-
V
--
K
-
D
L
P
------------------------
N
A
N
P
KSNV
I
P
K
G
K
Y
L
V
L
G
D
N
R
E
V
S
K
D
S
R
A
F
G
L
I
D
E
D
Q
I
V
G
K
V
S
------------------
26
HHSearch
67.45
38%
-63
- C10 -
4WVI
-
MALE_ECO57
A:
[377-524]
-----------------------
I
V
T
P
Y
T
I
K
G
E
S
M
D
P
T
L
K
D
G
E
R
V
A
V
N
I
V
G
Y
K
------------
T
G
-----------
L
E
------------
K
G
N
V
V
V
F
H
A
N
-
K
--
N
D
D
Y
--
V
K
R
V
I
G
V
P
G
D
K
V
E
Y
-------------
K
-
N
--
D
-
T
L
Y
V
---------------------------------
N
G
K
K
Q
-----
D
----
E
----
P
--
Y
L
N
--------
Y
N
L
---------------
K
H
K
---
Q
G
-
D
---------------
Y
I
---
T
GTF-----
Q
-
V
-----
K
-------------------
D
-
L
--
P
N
A
N
P
------------------------
K
S
N
V
----
I
P
K
G
K
Y
L
V
L
G
D
N
R
E
V
S
K
D
S
R
A
F
G
L
I
D
E
D
Q
I
V
G
K
V
S
F
R
----------------
41
Fugue
67.22
35%
-77
- C10 -
1B12
1
LEP_ECOLI
A:
[2-248]
--------------------
R
S
F
I
Y
E
P
F
Q
I
P
S
G
S
M
M
P
T
L
L
I
G
D
F
I
L
V
E
K
F
A
Y
G
------------
I
K
----------
D
P
I
Y
Q
K
T
L
I
E
T
G
H
P
K
R
G
D
I
V
V
F
K
Y
P
-
E
DP
K
L
D
Y
--
I
K
R
A
V
G
L
P
G
D
K
V
T
Y
DP-----------
V
-
S
--
K
-
E
L
T
I
Q
P
GCSSGQACENALP
V
T
Y
S
N
VEPSD
F
V
Q
T
F
S
RR
N
G
G
E
A
-----
T
----
S
----
G
--
F
F
E
VPKN
E
T
K
E
N
G
I
---------------
R
L
S
---
E
R
-
K
---------------
E
T
---
L
--------
G
-
D
-----
V
-------------------
T
-
H
--
R
-
I
L
T
VPIAQDQVGMYYQQPGQQL-----
A
T
W
I
----
V
P
P
G
Q
Y
F
M
M
G
D
N
R
D
N
S
A
D
S
R
Y
W
G
F
V
P
E
A
N
L
V
G
R
A
T
A
I
W
MSFDGLRLSRIGGIH
6
PsiBlast_PDB
64.70
41%
-58
- C10 -
4ME8
2
?
A:
[23-139]
------------------------------------------------
S
I
----------------
K
----------
K
P
Q
------------
R
F
D
I
I
A
F
P
S
P
R
N
--
G
Q
R
V
--
A
K
R
L
I
G
L
P
G
E
T
V
E
Y
-------------
R
-
D
--
D
-
T
L
Y
I
---------------------------------
N
G
V
S
L
-----
S
----
E
----
D
--
Y
L
A
--------
S
A
K
R--------------
N
V
S
---
K
N
-
E
---------------
N
Y
---
T
--------
Q
-
D
-----
F
-------------------
T
-
L
--
E
-
T
L
E
------------------------
A
T
Q
S
LT--
V
P
E
G
M
Y
F
V
L
G
D
N
R
P
R
S
D
D
S
R
Y
F
G
F
V
K
Q
A
S
V
E
G
V
L
T
------------------
24
HHSearch
62.59
41%
-55
- C10 -
4ME8
2
?
A:
[23-139]
------------------------------------------------
S
I
K
--------------------------
K
P
Q
------------
R
F
D
I
I
A
F
P
S
P
-
R
N-
G
Q
R
V
--
A
K
R
L
I
G
L
P
G
E
T
V
E
Y
-------------
R
-
D
--
D
-
T
L
Y
I
---------------------------------
N
G
V
S
L
-----
S
----
E
----
D
--
Y
L
A
--------
S
A
K
---------------
R
N
V
---
S
K
N
E
---------------
N
Y
---
T
--------
Q
-
D
-----
F
-------------------
T
-
L
ET
L
-
E
A
T
------------------------
Q
S
L
T
----
V
P
E
G
M
Y
F
V
L
G
D
N
R
P
R
S
D
D
S
R
Y
F
G
F
V
K
Q
A
S
V
E
G
V
L
T
------------------
10
PsiBlast_PDB
60.14
27%
-56
- C10 -
3IIQ
6
LEP_ECOLI
A:
[5-220]
----------------------
F
I
Y
E
P
F
Q
I
P
S
G
S
M
M
P
T
L
L
I
G
D
F
I
L
V
E
K
F
-----------------------------
H
PK----------
R
G
D
I
V
V
F
K
Y
P
-
E
--
D
P
K
L
D
Y
I
K
R
A
V
G
L
P
G
D
K
V
T
Y
D
PVSK
E
L
T
I
Q
P
GC
S
-------
A
C
E
---------------------------------
N
A
L
P
V
-----
T
Y
S
NV
E
----
P
SD
F
V
Q
--------
T
F
S
---------------------------------------------
S
--------
G
-
F
-----
F
EVPKN
E
T
K
E
N
G
I
R
L
S
E
R
K
E
T
-
L
--
G
-
D
V
T
H
R
I
L
T
VPIAQDQVGMYYQQPGQQL
A
T
W
I
----
V
P
P
G
Q
Y
F
M
M
G
D
N
R
D
N
S
A
D
S
R
Y
W
G
F
V
P
E
A
N
L
V
G
---------------------
7
PsiBlast_PDB
59.92
27%
-64
- C10 -
1T7D
1
LEP_ECOLI
A:
[7-230]
-----------------------
I
Y
E
P
F
Q
I
P
S
G
S
M
M
P
T
L
L
I
G
D
F
I
L
V
E
K
F
-----------------------------
H
PK----------
R
G
D
I
V
V
F
K
Y
P
-
E
--
D
P
K
L
D
Y
I
K
R
A
V
G
L
P
G
D
K
V
T
Y
D
PVSK
E
L
T
I
Q
P
GC--------------------------------------------
N
A
L
P
V
-----
T
Y
S
N
V
E
----
P
S
D
F
V
Q
--------
T
F
S
---------------
R
R
-------
E
---------------
A
T
---
S
--------
G
-
F
-----
F
E
V
P
KNETKE
N
G
I
R
L
S
E
R
K
E
T
-
L
--
G
-
D
V
T
H
R
I
L
T
V
PIAQDQVGMYYQQPGQQL
A
T
W
I
----
V
P
P
G
Q
Y
F
M
M
G
D
N
R
D
N
S
A
D
S
R
Y
W
G
F
V
P
E
A
N
L
V
G
---------------------
9
PsiBlast_PDB
59.41
27%
-50
- C10 -
1KN9
-
LEP_ECOLI
A:
[76-303]
-------------------
V
R
S
F
I
Y
E
P
F
Q
I
P
S
G
S
M
M
P
T
L
L
I
G
D
F
I
L
V
E
K
F
A
Y
G
------------
I
K
DPIYQ
K
T
L
I
E
T
G
H
P
K
----------
R
G
D
I
V
V
F
K
Y
P
-
E
--
D
P
K
L
D
Y
I
K
R
A
V
G
L
P
G
D
K
V
T
Y
D
PVSK
E
L
T
I
Q
P
GC
S
-
S
-----------------------------------------
N
A
L
P
V
-----
T
Y
S
N
V
E
----
P
S
D
F
V
Q
--------
T
F
S
---------------
R
R
N
---
G
G
-
E
---------------
A
T
---
S
--------
G
-
F
-----
F
EVPKN
E
T
K
E
N
G
I
R
L
S
E
R
K
E
T
-
L
--
G
-
D
V
T
H
R
I
L
T
VPIAQDQVGMYYQQPGQQL
A
T
W
I
----
V
P
P
G
Q
Y
F
M
M
G
D
N
R
D
N
S
A
D
S
R
Y
W
G
F
V
P
E
A
N
L
V
G
---------------------
8
PsiBlast_PDB
58.52
27%
-48
- C10 -
3S04
3
LEP_ECOLI
A:
[6-230]
----------------------
F
I
Y
E
P
F
Q
I
P
S
G
S
M
M
P
T
L
L
I
G
D
F
I
L
V
E
K
F
A
----------------------------
H
PK----------
R
G
D
I
V
V
F
K
Y
P
-
E
--
D
P
K
L
D
Y
I
K
R
A
V
G
L
P
G
D
K
V
T
Y
DPVSK
E
L
T
I
Q
P
GC
S
-------
A
C
E
---------------------------------
N
A
L
P
V
-----
T
Y
S
N
V
E
----
P
S
D
F
V
Q
--------
T
F
------------------------------------------
T
---
S
--------
G
-
F
-----
F
EVPKN
E
T
K
E
N
G
I
R
L
S
E
R
K
E
T
-
L
--
G
-
D
V
T
H
R
I
L
T
V
PIAQDQVGMYYQQPGQQL
A
T
W
I
----
V
P
P
G
Q
Y
F
M
M
G
D
N
R
D
N
S
A
D
S
R
Y
W
G
F
V
P
E
A
N
L
V
G
---------------------
11
PsiBlast_PDB
58.45
27%
-51
- C10 -
1B12
1
LEP_ECOLI
A:
[2-227]
--------------------
R
S
F
I
Y
E
P
F
Q
I
P
S
G
S
M
M
P
T
L
L
I
G
D
F
I
L
V
E
K
F
A
Y
G
------------
I
K
D
PIY
Q
K
T
L
I
E
T
G
H
P
K
----------
R
G
D
I
V
V
F
K
Y
P
-
E
--
D
P
K
L
D
Y
I
K
R
A
V
G
L
P
G
D
K
V
T
Y
DPVSK
E
L
T
I
Q
P
GC
S
-
S
--
G
-
Q
A
C
E
---------------------------------
N
A
L
P
V
-----
T
Y
S
N
V
E
----
P
SD
F
V
Q
--------
T
F
S
---------------
R
R
N
---
G
G
-
E
---------------
A
T
---
S
--------
G
-
F
-----
F
EVPKN
E
T
K
E
N
G
I
R
L
S
E
R
K
E
T
-
L
--
G
-
D
V
T
H
R
I
L
T
VPIAQDQVGMYYQQPGQQL
A
T
W
I
----
V
P
P
G
Q
Y
F
M
M
G
D
N
R
D
N
S
A
D
S
R
Y
W
G
F
V
P
E
A
N
L
V
G
---------------------
22
HHSearch
55.16
46%
-44
- C10 -
4NV4
3
?
A:
[48-162]
----------------------------------------------------
H
------------
V
G
----------
D
L
N
------------
R
F
D
V
V
V
F
H
A
N
-
K
--
K
E
D
Y
--
V
K
R
I
I
G
L
P
G
D
H
I
E
Y
-------------
K
-
H
--
D
-
K
L
Y
V
---------------------------------
N
G
Q
F
V
-----
D
----
E
----
P
--
Y
L
E
--------
T
Y
K
---------------
K
E
I
---
D
G
-
R
---------------
Q
L
---
T
--------
G
-
D
-----
F
-------------------
K
-
L
--
E
-
E
L
T
------------------------
K
E
K
S
----
V
P
P
G
Y
I
F
V
V
G
D
N
R
L
G
S
W
D
S
R
H
F
G
F
V
K
A
D
T
V
V
G
K
V
D
L
R
----------------
1
PsiBlast_PDB
54.98
46%
-45
- C10 -
4NV4
3
?
A:
[48-160]
----------------------------------------------------
H
------------
V
G
----------
D
L
N
------------
R
F
D
V
V
V
F
H
A
N
-
K
--
K
E
D
Y
--
V
K
R
I
I
G
L
P
G
D
H
I
E
Y
-------------
K
-
H
--
D
-
K
L
Y
V
---------------------------------
N
G
Q
F
V
-----
D
----
E
----
P
--
Y
L
E
--------
T
Y
K
---------------
K
E
I
---
D
G
-
R
---------------
Q
L
---
T
--------
G
-
D
-----
F
-------------------
K
-
L
--
E
-
E
L
T
------------------------
K
E
K
S
----
V
P
P
G
Y
I
F
V
V
G
D
N
R
L
G
S
W
D
S
R
H
F
G
F
V
K
A
D
T
V
V
G
K
V
D
------------------
21
PsiBlast_CBE
53.84
46%
-37
- C10 -
4NV4
4
?
B:
[51-160]
-----------------------------------------------------------------------------
D
L
N
------------
R
F
D
V
V
V
F
H
A
N
-
K
--
K
E
D
Y
--
V
K
R
I
I
G
L
P
G
D
H
I
E
Y
-------------
K
-
H
--
D
-
K
L
Y
V
---------------------------------
N
G
Q
F
V
-----
D
----
E
----
P
--
Y
L
E
--------
T
Y
K
---------------
K
E
I
---
D
G
-
R
---------------
Q
L
---
T
--------
G
-
D
-----
F
-------------------
K
-
L
--
E
-
E
L
T
------------------------
K
E
K
S
----
V
P
P
G
Y
I
F
V
V
G
D
N
R
L
G
S
W
D
S
R
H
F
G
F
V
K
A
D
T
V
V
G
K
V
D
------------------
12
PsiBlast_PDB
53.44
25%
-93
- C10 -
4N31
-
?
A:
[39-155]
----------------------------------
M
S
P
A
L
S
A
G
D
G
V
L
Y
Y
R
L
T
D
R
------------
Y
-------------
H
------------
I
N
D
V
V
V
Y
E
-
V
-
D
--
N
T
L
K
--
V
G
R
I
A
A
Q
A
G
D
E
V
S
F
T
------------
Q
-
E
--
G
-
G
L
L
I
---------------------------------
N
G
H
P
P
-----
E
----
K
EV--
P
--
Y
L
T
--------
Y
--------------------------
P
---------------
H
S
---
S
--------
G
P
N
-----
F
-------------------
P
-
Y
--
K
------------------------------------
V
P
T
G
T
Y
F
I
L
N
D
Y
R
E
E
R
L
D
S
R
Y
Y
G
A
L
P
I
N
Q
I
K
G
K
I
S
------------------
23
HHSearch
53.21
24%
-86
- C10 -
4N31
-
?
A:
[22-157]
-----------------
F
Q
G
A
Q
Y
V
F
G
V
M
I
I
N
T
N
D
M
S
P
A
L
S
A
G
D
G
V
L
Y
Y
R
L
T
D
-------------------------
R
Y
H
------------
I
N
D
V
V
V
Y
E
V
D
----
N
T
L
K
--
V
G
R
I
A
A
Q
A
G
D
E
V
S
F
-------------
T
Q
E
--
G
-
G
L
L
I
---------------------------------
N
G
H
P
P
-----
E
----
K
----
E
VP
Y
L
T
--------
Y
P
H
---------------
S
-----------------------------------------------------------------------
S
-
G
P
N
------------------------
F
P
Y
K
----
V
P
T
G
T
Y
F
I
L
N
D
Y
R
E
E
R
L
D
S
R
Y
Y
G
A
L
P
I
N
Q
I
K
G
K
I
S
T
L
----------------
42
Fugue
52.16
25%
-62
- C10 -
4K8W
5
?
A:
[10-127]
---------------------------------------
S
A
G
D
G
V
L
Y
Y
R
L
T
D
R
------------
Y
H
-------------------------
I
N
D
V
V
V
Y
E
V
--
D
--
N
T
L
K
--
V
G
R
I
A
A
Q
A
G
D
E
V
S
F
-------------
T
-
Q
--
E
G
G
L
L
I
---------------------------------
N
G
H
P
P
-----
E
----
K
----
E
--
V
P
Y
--------
L
T
Y
---------------
P
H
S
---
S
G
-
P
------------------------------------------------------------------
N
------------------------
F
P
Y
K
----
V
P
T
G
T
Y
F
I
L
N
D
Y
R
E
E
R
L
D
S
R
Y
Y
G
A
L
P
I
N
Q
I
K
G
K
I
S
T
L
L
R
V
R------------