@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu11799: (2016-06-18 )
MNEFEKWIEGRYEPHEQKQKEHEDTMGSIRKDLDAFDKAGLEFEDEIEELAEKTEALLKKHQAQYDQS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------.........10.--.......20-..--.......30........40....----....50........60.......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------M
N
E
F
E
K
W
I
E
GRY--EP
H
E
Q
K
Q
K
--
E
H
--
E
D
T
M
G
S
I
R
K
D
L
D
A
F
D
KAGLE
F
E
D
----
E
I
E
E
L
A
E
K
T
E
A
L
L
K
K
H
Q
A
QYDQS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
81.21
17%
-69
- C1 -
1HCI
-
ACTN2_HUMAN
A:
[272-746]
SS
A
V
N
Q
E
N
E
R
L
M
E
E
Y
E
R
L
A
S
E
L
L
E
W
I
R
R
T
I
PWLENR
T
P
E
K
T
M
Q
A
M
Q
K
K
L
E
D
F
R
D
Y
RRKH
K
P
P
K
V
Q
E
K
C
Q
L
E
INFN
T
L
Q
T
K
L
R
I
S
NRPAFMPSEGKMVSD
I
A
G
A
W
Q
R
L
E
Q
A
E
KG
Y
E
E
W
L
L
N
E
I
R
R
L
E
R
L
E
H
L
A
E
K
F
R
Q
K
A
S
T
H
E
T
W
A
Y
G
K
E
--
Q
I
L
L
Q
K
D
Y
--
E
S
AS
L
T
E
V
R
A
L
L
R
K
H
E
A
F
E
S
D
L
A
A
H
Q
D
----
R
V
E
Q
I
A
A
I
A
Q
E
L
N
E
L
D
Y
H
D
A
V
N
V
N
D
R
C
Q
K
I
C
D
Q
W
D
R
L
G
T
L
T
Q
K
R
R
E
A
L
E
R
M
E
K
L
L
E
T
I
D
Q
L
H
L
E
F
A
K
R
A
A
P
F
N
N
W
M
E
G
A
M
E
D
L
Q
D
M
F
I
V
HS
I
E
E
I
Q
S
L
I
T
A
H
E
Q
F
K
A
T
L
P
E
A
D
G
E
R
Q
S
I
M
A
I
Q
N
E
V
E
K
V
I
Q
S
Y
NIRISSSNPYSTVT
M
D
E
L
R
T
K
W
D
K
V
K
Q
L
V
P
I
R
D
Q
S
L
Q
E
E
L
A
R
Q
H
A
N
E
R
L
R
R
Q
F
A
A
Q
A
N
A
I
G
P
W
I
Q
N
K
M
E
E
I
A
R
SSIQITGAL
E
D
Q
M
N
Q
L
K
Q
Y
E
H
N
I
I
N
Y
K
N
N
I
D
K
L
E
G
D
H
Q
L
I
Q
E
A
LVFDNKHTNYT
M
E
H
I
R
V
G
W
E
L
L
L
T
T
I
A
R
T
I
N
E
V
E
T
Q
I
L
T
RD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
75.51
36%
-39
- C1 -
4YV3
2
VIME_HUMAN
A:
[35-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
E
--
E
A
--
E
N
T
L
Q
S
F
R
Q
D
V
D
N
A
S
L
A
R
L
D
L
E
R
----
K
V
E
S
L
Q
E
E
I
A
F
L
K
K
L
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
73.95
28%
-66
- C- -
4BOU
-
OTUD3_HUMAN
A:
[85-129]
-------------------------------------------------------------------------------------------------------------------------------------------------
L
E
G
H
S
--
R
N
H
L
K
H
R
Q
--
E
T
--
V
D
Y
M
I
K
Q
R
E
D
F
E
P
F
V
E
D
D
I
P
F
E
K
----
H
V
A
S
L
A
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
73.57
36%
-13
- C1 -
3SWK
-
VIME_HUMAN
A:
[195-238]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
E
--
E
A
--
E
N
T
L
Q
S
F
R
Q
D
V
D
N
A
S
L
A
R
L
D
L
E
R
----
K
V
E
S
L
Q
E
E
I
A
F
L
K
K
L
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
72.13
35%
18
- C- -
4YPC
-
VIME_HUMAN
A:
[195-239]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
E
--
E
A
--
E
N
T
L
Q
S
F
R
Q
D
V
D
N
A
S
L
A
R
L
D
L
E
R
----
K
V
E
S
L
Q
E
E
I
A
F
L
K
K
L
H
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
71.92
36%
-
- C1 -
3UF1
-
VIME_HUMAN
A:
[195-238]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
E
--
E
A
--
E
N
T
L
Q
S
F
R
Q
D
V
D
N
A
S
L
A
R
L
D
L
E
R
----
K
V
E
S
L
Q
E
E
I
A
F
L
K
K
L
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
66.07
17%
-48
- C1 -
2A3D
-
?
A:
[1-73]
------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
W
A
E
F
K
Q
R
L
A
--
A
I
K
T
R
L
Q
A
LG
G
S
--
E
A
E
L
A
A
F
E
K
E
I
A
A
F
E
S
E
L
Q
A
Y
K
G
KGNP
E
V
E
A
L
R
K
E
A
A
A
I
R
D
E
L
Q
A
Y
R
H
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
58.44
8%
-2
- C1 -
3DOR
9
Y858_CHLTR
A:
[1-567]
--------------------------------------------------------------------------------------------------------------------------------S
L
V
C
K
N
A
L
Q
D
L
S
F
L
E
H
L
L
Q
V
K
Y
--
A
P
K
T
W
K
E
Q
--
Y
L
--
G
W
D
----------
L
V
Q
S
S
V
S
A
Q
Q
----
K
L
R
T
Q
E
N
P
S
T
S
F
C
Q
Q
V
L
A
D
F
I
G
G
L
NDFH
A
G
V
T
F
FAI
E
S
A
Y
L
P
Y
T
V
Q
K
S
SDGRFYFVDIMTFSSEIRVG
D
E
L
L
E
VDGAP
V
Q
D
V
L
A
T
L
YGSNHKGT
A
A
E
E
S
A
A
L
R
T
L
FSRMASLGHK
V
P
S
G
R
T
T
L
K
I
R
R
PF
G
T
T
R
E
V
R
V
K
W
RYVPEGVGDLATIAPSIRAPQLGYNIGSTDGFLPVIGPVIWESEGLFR
A
Y
I
S
S
V
T
D
GDG
K
S
H
K
V
G
F
L
R
IPTYSWQDMEDFDPSGPP
P
W
E
E
F
A
K
I
I
Q
V
F
S
S
NTE
A
L
I
I
D
QTNNPGGS
V
L
Y
L
Y
A
L
L
S
M
L
T
D
R
P
L
E
L
P
K
H
R
M
I
L
T
Q
D
E
V
V
D
A
L
D
W
L
T
L
L
E
NVDT
N
V
E
S
R
L
A
L
GDNMEG
Y
T
V
D
L
Q
V
A
E
Y
L
K
S
F
G
R
Q
V
L
N
C
W
S
K
GDIELSTPIPLFGFE
K
I
H
P
HPRVQYS
K
P
I
C
V
L
I
N
EQDF
S
C
A
D
F
F
P
V
V
L
K
D
N
DR
A
L
I
V
G
T
RTAGAG
G
F
V
F
N
V
Q
F
P
N
RTGIK
T
C
S
L
T
G
S
L
A
V
R
EHGAFIENIGVEPHIDLPFTANDIRYKGY
S
E
Y
L
D
K
V
K
K
L
V
C
Q
L
I
N
NDG-------------------------------------------------------------------------------------------------------------
20
Fugue
56.59
11%
-96
- C1 -
3VJZ
-
?
A:
[0-163]
------------------------------------------HMT
A
L
T
L
P
EDIRQQE
P
S
A
L
L
Y
T
L
V
S
A
Y
L
E
H
T
A
Q
TGDESLSCLS
D
D
Q
H
T
L
T
A
F
C
Y
L
D
S
Q
V
E
E
GG
F
V
Q
L
I
A
S
GY
G
E
Y
I
F
RNP
L
A
D
S
L
R
R
W
KIK
A
V
P
K
V
L
D
K
A
K
A
L
Y
E
Q
H
G
--
K
T
I
E
T
L
A
D
--
G
G
--
A
D
-
I
P
S
L
R
K
Q
F
P
E
F
E
E
W
D
G
A
Y
Y
E
----
A
A
E
Q
D
L
P
L
L
A
E
H
I
Q
S
N
W
E
T
F
A
H
I
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
55.05
11%
111
- C1 -
2ZQM
5
?
A:
[59-114]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
G
T
L
I
V
K
T
T
K
D
K
A
V
A
--
E
L
--
K
E
K
I
E
T
L
E
V
R
L
N
A
L
E
R
Q
E
K
K
L
N
E
----
K
L
K
E
L
T
A
Q
I
Q
S
A
L
R
P
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
53.76
19%
61
- C1 -
2I7U
-
?
A:
[1-62]
------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
L
R
E
E
A
A
K
L
F
--
E
E
W
K
K
L
A
E
--
E
A
--
A
K
L
L
E
G
------
G
G
G
G
G
G
G
E
L
M
K
----
L
C
E
E
A
A
K
K
A
E
E
L
F
K
L
A
E
E
R
L
K
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
53.74
11%
43
- C1 -
1OWA
-
SPTA1_HUMAN
A:
[1-156]
-----------------------------------------------------------------------------ME
Q
F
P
K
E
T
V
V
ESS
G
P
K
V
LET
A
E
E
I
Q
E
R
R
Q
E
V
L
T
R
Y
Q
S
F
K
E
R
V
A
E
R
GQKLEDSY
H
L
Q
V
F
K
R
D
A
D
D
L
G
K
W
I
M
E
K
V
--
N
I
L
T
D
K
S
Y
--
E
D
--
P
T
N
I
Q
G
K
Y
Q
K
H
Q
S
L
E
A
E
V
Q
T
K
S
R
----
L
M
S
E
L
E
K
T
R
E
E
R
F
T
M
G
H
S
A
H
E
E
T
K
A
H
I
E
E
L
R
H
L
W
D
L
L
L
E
L
T
L
E
K
G
D
Q
L
LR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
50.68
10%
18
* C1 *
2ODV
1
A:
[8-225]
----------E
L
Q
L
R
W
Q
E
Y
R
E
L
V
L
L
L
L
Q
W
M
R
H
H
T
A
A
F
E
ERFPSS
F
E
E
I
E
I
L
W
S
Q
F
L
K
F
K
E
M
E
L
P
A
K
E
A
D
K
N
R
S
K
G
I
Y
Q
S
L
E
G
A
V
Q
A
GQ
L
K
V
P
PGYH
P
L
D
V
E
K
E
W
G
K
L
H
V
A
I
L
E
R
E
K
Q
L
R
S
E
F
E
R
L
E
A
L
Q
R
I
V
T
K
L
Q
M
E
A
G
L
A
E
E
Q
L
N
Q
A
D
--
A
L
L
Q
S
D
V
R
--
L
L
--
A
A
--
G
K
V
P
Q
R
A
G
E
V
E
R
D
L
D
K
A
D
S
----
M
I
R
L
L
F
N
D
V
Q
T
L
K
D
G
R
H
P
Q
G
E
Q
M
Y
R
R
V
Y
R
L
H
K
R
L
V
A
I
R
T
E
Y
N
L
R
LK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
50.61
15%
36
- C1 -
3VSM
1
OE66_NPVAC
A:
[27-659]
--------------------------------------------------------------------------------------------------------------------------------------N
I
Q
E
L
Q
N
F
E
R
W
F
K
N
N
L
--
S
Y
S
F
S
Q
K
A
--
E
K
--
V
V
N
P
N
R
N
W
N
D
N
T
V
F
D
--
N
L
S
P
W
T
----
S
V
P
D
F
G
T
V
C
H
T
L
I
G
Y
C
V
R
Y
N
N
T
S
DTLYQN
P
E
L
A
Y
N
L
I
N
G
L
R
I
I
C
S
K
LPDPPPHQQAPWGPVADWYHFTI
T
M
P
E
V
F
M
N
I
T
I
V
L
N
ETQH
Y
D
E
A
A
S
L
T
R
Y
W
LGLYLPTAVNSMG
W
H
R
T
A
G
N
S
M
R
M
G
V
P
Y
T
Y
S
Q
M
L
R
GYS
L
A
Q
I
R
Q
E
Q
G
I
Q
E
I
L
N
T
I
AFPYVTQGNGLHVDS
I
Y
I
D
HIDVRAY
G
Y
L
I
N
S
YFT
F
A
Y
Y
T
Y
Y
FGDEVIN
T
V
G
L
T
R
A
I
E
N
VGSPEGVVVPGVMSRNGTLYSNVIGNFITYPL
A
V
H
S
ADYS
K
V
L
T
K
L
S
KT
Y
Y
G
S
V
V
G
V
T
NRLAY
Y
E
S
D
PTNNIQ
A
P
L
W
T
MAR
R
I
W
N
RRGRI
I
N
Y
N
ANTVSFESGIILQSLNG
I
M
R
I
P
S
GTT
S
T
Q
S
F
R
P
T
I
G
Q
T
A
I
A
K
T
DT
A
G
A
I
L
V
Y
A
K
F
AEMNN
L
Q
F
K
S
C
T
L
F
Y
DH
G
M
F
Q
L
Y
Y
NIGVEPNSLNN
T
N
G
R
V
I
VLSRDTSVNTNDLS
F
E
A
Q
R
I
N
N
NNSSEGTTFNG
V
V
C
H
R
V
P
I
T
N
I
N
V
P
S
L
T
V
R
S
PNSS
V
E
L
V
E
Q
I
I
S
F
Q
T
M
Y
T
AT
A
S
A
C
Y
K
L
N
VEGHSDS
L
R
A
F
R
V
NSDEN
I
Y
V
N
VGNG
V
K
A
L
F
N
Y
P
W
V
M
V
K
E
NN
K
V
S
F
M
S
ANEDTTIP
F
S
V
I
M
N
S
F
T
S
I
GEPA
L
Q
Y
S
P
SNCFVYGN
G
F
K
L
NNSTF
D
L
Q
F
I
F
E
I
V
14
HHSearch
46.88
15%
-6
- C1 -
3WZ2
-
?
A:
[200-231]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
N
V
S
V
E
P
L
L
K
E
A
E
M
I
E
E
----
Q
L
R
R
M
H
E
Q
M
E
E
A
R
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
45.10
13%
18
- C1 -
1FXK
-
PFDA_METTH
C:
[92-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
M
E
S
I
K
S
Q
K
N
E
L
E
S
T
L
Q
K
M
G
E
----
N
L
R
A
I
T
D
I
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
44.05
19%
-56
- C1 -
3VR0
-
?
A:
[236-260]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
E
I
D
M
T
A
L
D
E
R
A
K
E
T
E
E
----
I
L
R
K
V
E
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.54
18%
143
- C1 -
3KXY
-
EXSC_PSEAE
A:
[107-128]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
E
C
F
E
A
----
T
L
A
N
L
L
D
H
A
E
F
W
Q
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.32
5%
85
- C1 -
1FXK
-
PFDB_METTH
A:
[58-101]
-------------------------------------------------------------------------------------------------------------------------------------------------
S
G
N
I
L
I
R
V
A
K
D
E
L
T
E
--
E
L
--
Q
E
K
L
E
T
L
Q
L
R
E
K
T
I
E
R
Q
E
E
R
V
M
K
----
K
L
Q
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.60
50%
388
- C1 -
2LN3
-
?
A:
[39-56]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
I
E
E
F
E
R
----
D
M
E
D
L
A
K
K
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------