@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu11960: (2016-06-18 )
MAEKHIQAYKDYVKGMKYKDLAEKYGVSVNTIKSWKQRHGWERKKGAPIEKSVHTKKGGQPGNKNALGNNGGAPQKNQNAVTHGFFSKFLPEETLEIMEEIQERSPADMIWDQIQIQYAAILRAQKIMFVSDKEEMIKELKKKRSLISEVSEIEDGLVISFSTWFRYRLYSETNT
Atome Classification :
(20 SA)
.........10-.-.......-20....-.--...30........40........50........60........70........-----80........90........100.......110.......120.......130......----.140.--......----150.......160.......170...----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
A
E
K
H
I
Q
A
Y
K
D
-
Y
-
V
KGM
K
Y
K
-
D
L
A
E
K
Y-G--VS
V
N
T
I
K
S
W
K
Q
RHGWERKKGAPIEKSVHTKKGGQPGNKNALGNNGGAPQKNQ
N
-----
A
V
T
H
G
F
F
S
K
FL
P
E
E
T
L
E
I
M
E
E
I
Q
ERS
P
A
D
M
I
W
D
Q
I
Q
I
Q
Y
A
A
I
L
R
A
Q
K
I
M
F
VS
D
K
E
E
M
I
K
----
E
L
K
K
K
--
R
S
L
I
S
E
----
V
S
E
IED
G
L
V
I
S
F
S
T
W
F
R
Y
R
L
YSETNT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
61.19
18%
-8
* C2 *
4IWS
-
FDC_PSEAE
A:
[23-515]
-
M
N
R
S
A
L
D
F
R
H
-
F
-
V
D
H
L
R
R
Q
G
D
L
V
D
V
H
T
E
--
V
D
A
N
L
E
I
G
A
I
T
R
R
V
Y
E
R
R
A
P
A
P
L
F
H
N
I
---
R
D
S
L
P
G
A
-
R
V
L
G
A
P
A
G
L
R
A
D
R
A
R
AH
S
R
L
A
L
H
F
G
L
P
E
H
S
G
P
R
D
I
V
A
M
L
R
A
A
M
R
A
E
P
-------
I
A
P
R
R
L
E
R
G
P
V
Q
E
N
V
W
L
G
E
Q
V
D
L
T
R
FPVP
L
L
H
E
Q
DG
G
R
Y
F
G
T
Y
G
F
H
V
V
Q
T
P
D
G
---
S
W
D
S
W
S
V
G
R
L
M
L
V
D
R
N
T
L
A
G
P
T
I
PTQ
H
I
G
I
I
R
E
Q
W
R
R
L
GK
P
T
P
W
A
M
A
L
GAP
P
A
A
L
A
A
A
G
MPLPEGVSEAGYVGALVG
E
P
V
E
V
V
R
T
QTNGLWVPANTE
I
V
L
E
G
E
ISLDETALEGPMGEYHGYSFP
I
G
K
P
Q
P
L
F
H
V
H
A
L
S
F
R
DQ
P
I
L
P
I
C
VAGTPPE
E
N
H
T
I
W
G
T
M
I
S
A
Q
L
L
D
V
A
Q
N
A
GLPVDMVWCSYEAATC
W
A
V
L
S
I
D
V
Q
R
L
A
A
L
GTD
A
A
A
F
A
A
R
V
A
E
T
V
F
G
S
H
A
G
H
L
V
P
K
L
I
L
V
G
NDIDVTE
I
D
Q
V
V
W
A
L
A
T
RAHPLHDHFAFPQIRDFPMVPYLD
A
E
D
K
A
R
GSGG
R
L
V
I
N
CLY
P
E
Q
F
A
GQMRAATASFRHAYP
T
A
L
R
R
R
V
E
E
R
W
SDYGF
11
HHSearch
57.92
18%
-170
- C1 -
2W48
-
SORC_KLEPN
A:
[8-52]
--
R
L
I
V
K
I
A
Q
L
-
Y
Y
E
Q
D
M
T
Q
A
-
Q
I
A
R
E
L
-
G
--
I
Y
R
T
T
I
S
R
L
L
K
R
G
R
E
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
55.11
15%
-126
- C1 -
3MZY
-
?
A:
[151-190]
-
S
K
F
E
K
E
V
L
T
Y
-
L
-
I
R
G
Y
S
Y
R
-
E
I
A
T
I
L
-
S
--
K
N
L
K
S
I
D
N
T
I
Q
R
I
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
54.04
29%
-114
- C1 -
5FGM
-
?
A:
[157-195]
--
E
E
F
R
I
A
V
Y
L
-
A
D
V
E
G
F
A
Y
K
-
E
I
A
D
I
M
-
G
--
T
P
I
G
T
V
M
S
R
L
H
R
G
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
52.69
15%
0
- C- -
4HEA
-
NQO7_THET8
A:
[1-117]
-----
M
A
P
I
Q
E
-
Y
-
V
G
T
L
I
Y
V
-
G
V
A
L
F
I
-
G
--
V
A
A
L
L
V
G
A
L
L
G
P
K
K
P
G
R
A
K
L
M
P
Y
E
-------------------
S
G
N
D
P
A
G
E
---------
V
K
R
F
P
V
H
F
Y
V
V
A
M
L
F
I
L
F
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E
V
A
F
L
W
P
Y
A
V
S
A
G
G
L
G
L
Y
G
F
L
G
V
L
A
F
T
L
L
L
F
V
G
F
L
Y
E
----
W
W
K
G
V
--
M
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
51.68
12%
-185
- C1 -
1PDN
2
PRD_DROME
C:
[25-58]
------
K
I
V
E
M
-
A
-
A
D
G
I
R
P
C
-
V
I
S
R
Q
L
-
R
--
V
S
H
G
C
V
S
K
I
L
N
R
Y
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
50.30
16%
-104
- C1 -
2W7N
2
KORA2_ECOLX
A:
[21-59]
--
Q
Q
T
I
E
I
A
R
G
-
V
L
V
D
G
K
P
Q
A
-
T
F
A
T
S
L
-
G
--
L
T
R
G
A
V
S
Q
A
V
H
R
V
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
49.43
15%
-171
- C1 -
1ZV1
-
DSX_DROME
A:
[6-64]
-----------------------------------------------------------------------------------------------------
Q
D
V
F
L
D
Y
C
Q
K
L
L
E
K
F
R
Y
P
--
W
E
L
M
P
L
M
Y
V
I
L
K
D
A
D
-----
A
N
I
E
E
A
S
R
----
R
I
E
E
G
--
Q
Y
V
V
N
E
----
Y
S
R
Q
H
N
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
49.41
18%
-87
- C1 -
2LFW
-
?
A:
[94-134]
M
T
P
L
S
R
Q
A
L
L
L
-
T
A
M
E
G
F
S
P
E
-
D
A
A
Y
L
I
-
E
--
V
D
T
S
E
V
E
T
L
V
T
E
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
48.25
23%
-139
* C1 *
1JKO
2
C:
[19-46]
--------------
E
K
G
H
P
R
Q
-
Q
L
A
I
I
F
-
G
--
I
G
V
S
T
L
Y
R
Y
F
P
A
S
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
47.80
17%
-152
- C1 -
4J2N
1
?
A:
[4-32]
--------------
P
P
R
A
S
I
Q
-
Q
T
A
D
Y
L
-
G
--
V
S
T
K
T
V
R
N
Y
I
A
A
G
K
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
47.02
19%
-158
- C1 -
2X48
-
Y56_SIRV1
A:
[28-54]
------------
A
-
K
M
G
Y
T
V
Q
-
Q
I
A
N
A
L
-
G
--
V
S
E
R
K
V
R
R
Y
L
E
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
46.90
14%
-101
- C1 -
1FSE
-
GERE_BACSU
A:
[17-53]
-----
R
E
V
F
E
L
-
L
-
V
Q
D
K
T
T
K
-
E
I
A
S
E
L
-
F
--
I
S
E
K
T
V
R
N
H
I
S
N
A
M
Q
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.49
19%
-70
- C1 -
1X3U
-
FIXJ_RHIME
A:
[146-181]
----
E
R
Q
V
L
S
A
-
V
-
V
A
G
L
P
N
K
-
S
I
A
Y
D
L
-
D
--
I
S
P
R
T
V
E
V
H
R
A
N
V
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
44.41
12%
-145
- C1 -
2OG0
1
VXIS_LAMBD
A:
[3-30]
-----------------
L
T
L
Q
-
E
W
N
A
R
Q
-
R
RP
R
S
L
E
T
V
R
R
W
V
R
E
S
R
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
42.92
16%
-74
- C1 -
3VFZ
-
RPSD_MYCTU
A:
[160-198]
--
A
K
Q
R
E
I
L
I
L
R
V
-
V
V
G
L
S
A
E
-
E
T
A
A
A
V
-
G
--
S
T
T
G
A
V
R
V
A
Q
H
R
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
42.43
12%
-126
- C1 -
1U78
-
TC3A_CAEEL
A:
[14-47]
------
Q
L
D
V
M
-
K
-
L
L
N
V
S
L
H
-
E
M
S
R
K
I
-
S
--
R
S
R
H
C
I
R
V
Y
L
K
D
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
41.01
23%
-52
- C1 -
2MKX
-
A:
[1-51]
----
G
T
N
T
Y
Y
T
-
V
-
K
S
G
D
T
L
N
-
K
I
A
A
Q
Y
-
G
--
V
S
V
A
N
L
R
S
W
N
G
I
S
G
D
L
I
F
V
G
Q
K
L
I
V
K
K
G
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
40.55
12%
-35
* C3 *
2K19
-
?
A:
[1-98]
-------------------------------------------------------
M
G
K
L
K
W
F
S
G
G
K
E
R
S
N
Q
A
E
N
I
I
T
D
L
L
D
D
L
K
T
-----
D
L
D
N
E
S
L
K
K
V
L
E
N
Y
L
E
E
L
K
---
Q
K
S
A
S
V
P
L
I
L
S
R
M
N
L
D
I
S
K
A
I
R
N
D
G
V
T
L
S
D
Y
Q
S
K
K
L
K
----
E
L
T
S
I
--
S
N
I
R
Y
G
----
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
39.55
11%
-99
- C1 -
1KU3
-
SIGA_THEAQ
A:
[394-420]
---------------
R
E
H
T
L
E
-
E
V
G
A
Y
F
-
G
--
V
T
R
E
R
I
R
Q
I
E
N
K
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------