@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu12270: (2016-06-19 )
MERETQTYFFPDDGRIPNHPDFPLVVYQNALKDTGLAERIVTRHGWSNSWSGSVFPYHHYHSNTHEVLIALRREAVIQFGGEKGAAIPFKSGDAVVIPAGVGHKKLSSSPDFTVLGAYPGGVQYDMKTGKPNEREEAVKQIKQAALPANDPITGKREPLLEIWVK
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--.........20........30....---------------....40...-.....50.---------------..--------------.--.-------..-.60.------.......70.....--...-----80-...------------------..-------.---..-90........100...-..-...110---........-120.....-...130-.......140.......150.......160...----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MERE
T
Q
T
Y
F
F---PDDGRIPNHPDF
P
L
V
V
Y
Q
N
ALKDT
G
---------------
L
A
E
R
I
V
T
RH-GWSNSWSG---------------SV--------------
F
--
P
-------
Y
H-HYHS------
N
T
H
E
V
L
I
A
L
R
R
E
A
V
--
I
QF-----GG-EKG------------------AA-------I---PF-KSG
D
A
V
V
I
PAG-VGHK-KL-SSSP
D
----
F
T
V
L
GAYP-G
G
-
V
Q
Y
DM-KTGKP
N
-
E
R
E
E
A
V
K
Q
I
K
Q
AALPANDPITGKRE
P
L
L
E
IWVK----------
24
Fugue
68.36
21%
0
- C- -
4QGN
-
A:
[5--1]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
Q
A
W
Y
M
DDA
P
G
D
P
R
Q
P
H
R
P
D
P
G
R
P
V
G
L
E
Q
L
R
R
L
G
V
L
Y
W
K
L
DADKYEND
P
E
L
E
K
I
R
R
E
R
-
N
Y
S
W
M
D
I
I
---------------
T
I
C
KDKLPN
Y
E
E
K
I
K
M
F
--
Y
-------
E
E
-
H
L
H
L
------
D
D
-
E
I
R
Y
I
L
D
G
S
G
Y
--
F
D
V
R
D
---
K
E
-
D
Q
W
------------------
I
R
-------
I
---
F
M
-
E
K
G
D
M
V
T
L
P
A
G
-
I
Y
H
R
F
T
V
-
D
E
K
N
Y
----
T
K
A
M
R
L
F
V
-
G
E
-
P
V
W
T
A
-
Y
N
-
R
P
A
-
D
H
F
E
A
R
G
Q
Y
V
K
F
L
A
Q
T
---------------------------
26
Fugue
62.57
16%
-53
- C2 -
2PHL
2
PHSB_PHAVU
A:
[11-381]
------DNPFYFNSDNSWNTLFKNQY
G
H
I
R
V
L
Q
R
FDQQSKRLQNLED
Y
R
L
V
E
F
R
S
K
P
E
T
L
L
L
P
QQADAELLLVVR
S
G
S
A
I
L
V
L
V
K
PDD
R
R
E
Y
F
F
L
T
SDNPIFSD
H
Q
K
I
P
A
G
T
I
F
Y
L
V
NPDPK
E
D
L
R
I
I
Q
L
A
M
P
VNNP
Q
I
H
E
F
F
LSSTEAQQSYLQEFS
K
H
I
L
E
A
S
F
NSK
F
E
E
I
N
R
V
LFEEEGQQEGV
I
V
N
I
D
SEQI
K
E
L
S
K
H
-
A
K
S
S
N
-
T
I
G
---
N
E
F
G
N
L
T
E
R
T
D
----------
N
S
L
N
---------------
V
L
I
S
S
I
E
M
--------
E
E
---------------
G
A
--------------
L
--
F
-------
V
P
-
H
Y
Y
S
------
K
A
I
V
I
L
V
V
N
E
G
E
A
H
--
V
E
L
-----
V
G
-
P
K
G
------------------
E
T
L
E
Y
E
S
Y
R
A
---
E
L
-
S
K
D
D
V
F
V
I
P
A
A
-
Y
P
V
A
-
I
K
A
T
S
N
V
N
----
F
T
G
F
G
I
N
A
-
N
N
-
N
N
R
N
L
-
L
A
G
K
T
D
-
N
V
I
S
S
I
G
R
A
L
D
G
K
D
V
L
G
L
T
F
S
G
S
G
D
E
V
M
K
L
I
N
K
QSGSYFVDAH
31
Fugue
51.98
13%
-32
- C2 -
1J58
4
OXDC_BACSU
A:
[8-379]
PQPIRGDKGATVKIPRN
I
E
R
D
R
Q
N
P
DMLVPPETDHGTVSNMKFSFSD
T
H
N
R
L
E
KG
G
Y
A
R
E
V
T
VRELPISEN
L
A
S
V
N
M
R
L
K
PGAIR
E
L
H
W
H
K
E
A
E
W
A
Y
M
I
Y
G
S
A
R
V
T
I
V
D
EKG
R
S
F
I
D
D
V
G
EG
D
L
W
Y
F
P
S
G
L
P
H
S
I
Q
A
L
EE
G
A
E
F
L
L
V
F
DDGSFSENSTFQ
L
T
D
W
L
A
H
TP
K
E
V
I
A
A
N
F
GVTKEEISNLPGKEKY
I
F
E
N
Q
LPGS
L
K
D
D
I
V
E
------
G
P
N
G
E
V
P
Y
P
F
T
Y
R
L
L
E
Q
E
P
I
E
S
E
G
G
---------------
K
V
Y
I
A
D
S
T
N
F
K
V
S
K
T
I
A
S
---------------
A
L
--------------
V
--
T
V
E
PGAMR
E
L
-
H
W
H
P
------
N
T
H
E
W
Q
Y
Y
I
S
G
K
A
R
M
T
V
F
A
-----
S
D
-
G
H
A
------------------
R
T
-------
F
---
N
Y
-
Q
A
G
D
V
G
Y
V
P
F
A
M
G
H
Y
V
-
E
N
-
I
G
D
E
P
----
L
V
F
L
E
I
F
K
-
D
D
-
H
Y
A
D
V
S
L
N
Q
W
L
A
M
L
P
E
T
F
V
Q
A
H
L
D
L
G
K
D
F
T
D
V
L
S
K
E
K
H
P
V
V
---------------
32
HHSearch
45.41
25%
-84
- C2 -
1V70
-
?
A:
[34-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
L
P
---------------
G
Q
--------------
A
--
Q
-------
K
V
-
H
V
H
E
------
G
S
D
K
V
Y
Y
A
L
E
G
E
V
V
--
V
R
V
-----
G
E
-
E
---------------------
E
-------
A
---
L
L
-
A
P
G
M
A
A
F
A
P
A
G
-
A
P
H
G
-
V
R
-
N
E
S
A
S
P
---
A
L
L
L
V
V
T
A
-
P
----------------------------------------------------------
8
PsiBlast_PDB
44.23
62%
-297
- C4 -
2E9Q
-
11SB_CUCMA
A:
[130-181]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
-
R
E
G
D
L
L
V
V
P
A
G
-
V
S
H
----------------------------------------------------------------------------------
7
PsiBlast_PDB
43.64
62%
-326
- C4 -
2EVX
-
11SB_CUCMA
A:
[130-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
-
R
E
G
D
L
L
V
V
P
A
G
-
V
S
H
----------------------------------------------------------------------------------
47
HHSearch
43.52
17%
-158
- C2 -
4ZU5
-
?
A:
[43-113]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
---------------
D
I
--------------
T
--
R
-------
G
Y
-
H
S
H
K
------
K
L
H
Q
V
L
I
C
L
N
G
S
V
K
--
I
R
L
-----
K
I
-
P
D
E
E
-----------------
K
I
-------
I
---
E
L
N
D
P
S
V
G
L
Y
I
G
P
L
-
V
W
R
E
-
M
F
-
D
F
T
E
G
----
C
V
L
L
V
L
A
S
------------------------------------------------------------
49
HHSearch
43.35
22%
-95
- C2 -
1JUH
1
QDOI_ASPJA
A:
[255-335]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
S
T
---------------
T
P
--------------
S
TV
T
-------
V
P
-
T
W
S
F
------
P
G
A
C
A
F
Q
V
Q
E
G
R
V
V
--
V
Q
I
-----
G
D
Y
A
---------------------
A
-------
T
---
E
L
-
G
S
G
D
V
A
F
I
P
G
G
-
V
E
F
K
-
Y
Y
-
S
E
A
Y
F
----
S
K
V
L
F
V
S
S
G
S
D
-
G
L
D
Q
N
-
L
V
------------------------------------------------
6
PsiBlast_PDB
42.98
36%
-148
- C2 -
3D82
2
?
A:
[45-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
E
H
A
------
D
T
D
E
V
F
I
V
M
E
G
T
L
Q
--
I
A
F
---------
R
D
------------------
Q
N
-------
I
---
T
L
-
Q
A
G
E
M
Y
V
I
P
K
G
-
V
E
H
K
---------------------------------------------------------------------------------
28
Fugue
42.71
12%
-33
- C2 -
1FI2
1
OXO1_HORVU
A:
[1-201]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TDPDPLQDFCVADL
D
G
K
A
V
S
V
N
G
H
---
T
C
K
P
M
S
E
A
G
D
D
F
L
F
S
S
K
L
T
K
A
G
N
T
S
---------------
T
P
N
G
S
A
V
T
E
-
L
D
V
A
E
W
P
G
TNTLG
V
S
M
N
R
V
D
F
A
P
G
G
--------------
T
--
N
-------
P
P
-
H
I
H
P
------
R
A
T
E
I
G
M
V
M
K
G
E
L
L
--
V
G
I
L
G
S
LD
S
G
-
N
K
L
------------------
Y
S
-------
R
---
V
V
-
R
A
G
E
T
F
V
I
P
R
G
-
L
M
H
F
-
Q
F
-
N
V
G
K
T
E
A
Y
M
V
V
S
F
N
S
Q
N
-
P
G
-
I
V
F
V
P
-
L
T
L
F
G
S
-
D
P
P
I
P
T
P
V
L
T
K
A
L
R
V
E
A
G
V
V
E
L
L
K
S
K
F
A
G
G
S
------------
27
Fugue
42.29
11%
-58
- C2 -
3IBM
2
?
A:
[8-161]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
E
A
S
R
V
L
R
E
R
---
D
Y
R
W
E
G
T
E
E
E
S
G
A
R
R
Q
T
L
V
G
R
P
A
G
Q
---------------
E
A
P
A
F
E
T
R
Y
-
F
E
V
E
P
G
G
Y
---------------
T
T
--------------
L
--
E
-------
R
H
-
E
H
T
----------
H
V
V
M
V
V
R
G
H
A
E
--
V
V
L
-----
D
D
----------------------
R
V
-------
E
---
P
L
-
T
P
L
D
C
V
Y
I
A
P
H
-
A
W
H
Q
-
I
H
-
A
T
G
A
N
----
E
P
L
--
G
F
L
-
C
I
-
V
D
S
D
R
-
D
R
P
Q
R
P
-
D
A
D
D
L
A
R
M
C
A
D
P
A
V
A
R
R
I
R
T
E
G
---------------------
22
PsiBlast_CBE
42.23
38%
-126
- C2 -
2H0V
9
QDOI_BACSU
B:
[57-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---------------
D
A
--------------
F
--
P
-------
L
H
--
V
H
K
------
D
T
H
E
G
I
L
V
L
D
G
K
L
E
--
L
T
L
-----
D
G
-
E
R
Y
------------------
L
L
-------
I
-------
S
G
D
Y
A
N
I
P
A
G
-
T
P
H
----------------------------------------------------------------------------------
21
PsiBlast_CBE
42.14
38%
-119
- C2 -
1Y3T
1
QDOI_BACSU
B:
[56-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---------------
D
A
--------------
F
--
P
-------
L
H
--
V
H
K
------
D
T
H
E
G
I
L
V
L
D
G
K
L
E
--
L
T
L
-----
D
G
-
E
R
Y
------------------
L
L
-------
I
-------
S
G
D
Y
A
N
I
P
A
G
-
T
P
H
----------------------------------------------------------------------------------
3
PsiBlast_PDB
42.13
25%
-66
- C2 -
3C3V
1
?
A:
[376-444]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
N
L
Y
R
N
---------------
A
L
--------------
F
----------
V
P
-
H
Y
N
T
------
N
A
H
S
I
I
Y
A
L
R
G
R
A
H
--
V
Q
V
-----
V
D
-
S
N
G
------------------
N
R
-------
V
YDE
E
L
-
Q
E
G
H
V
L
V
V
P
Q
N
-
F
A
V
A
-
G
K
-
S
Q
S
D
N
----
F
-------------------------------------------------------------------
37
HHSearch
42.11
18%
-73
* C2 *
2Y0O
3
DLYKI_BACSU
A:
[59-163]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
F
P
---------------
G
Q
--------------
T
--
C
-------
P
E
-
H
R
H
P
PVDGQE
G
K
Q
E
T
F
R
C
R
Y
G
K
V
Y
--
L
Y
V
-----
E
G
-
E
K
T
PLPKVLPPQEDREHYTVW
H
E
-------
I
---
E
L
-
E
P
G
G
Q
Y
T
I
P
P
N
-
T
K
H
W
-
F
Q
-
A
G
E
E
G
----
A
V
V
T
E
M
S
S
-
T
S
T
D
K
H
D
I
-
F
T
------------------------------------------------
1
PsiBlast_PDB
40.38
38%
-116
- C2 -
1Y3T
1
QDOI_BACSU
A:
[56-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---------------
D
A
--------------
F
--
P
-------
L
H
--
V
H
K
------
D
T
H
E
G
I
L
V
L
D
G
K
L
E
--
L
T
L
-----
D
G
-
E
R
Y
------------------
L
L
-------
I
-------
S
G
D
Y
A
N
I
P
A
G
-
T
P
H
----------------------------------------------------------------------------------
2
PsiBlast_PDB
40.30
38%
-119
- C2 -
2H0V
6
QDOI_BACSU
A:
[57-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---------------
D
A
--------------
F
--
P
-------
L
H
--
V
H
K
------
D
T
H
E
G
I
L
V
L
D
G
K
L
E
--
L
T
L
-----
D
G
-
E
R
Y
------------------
L
L
-------
I
-------
S
G
D
Y
A
N
I
P
A
G
-
T
P
H
----------------------------------------------------------------------------------
9
PsiBlast_PDB
39.04
25%
-82
- C2 -
2I45
-
?
A:
[22-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
I
N
R
H
-
G
F
Q
F
H
L
V
K
---------------
L
L
--------------
G
--
D
-------
Y
G
W
H
T
H
--------
S
D
K
V
L
F
A
V
E
G
D
M
A
--
V
D
F
-----
A
---
D
G
------------------
G
S
-------
M
---
T
I
-
R
E
G
E
M
A
V
V
P
K
S
-
V
S
H
R
-
P
R
-
S
E
N
G
C
----
S
L
V
L
----------------------------------------------------------------
10
PsiBlast_PDB
38.83
27%
-181
- C2 -
3QAC
-
?
A:
[339-381]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
N
L
------
N
A
H
N
I
M
Y
C
V
R
G
R
G
R
--
I
Q
I
-----
V
N
-
D
Q
G
------------------
Q
S
-------
V
F
D
E
E
L
-
S
R
G
Q
L
V
V
V
P
----------------------------------------------------------------------------------------
48
HHSearch
38.02
16%
-94
- C2 -
3L2H
4
?
A:
[52-131]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
E
P
---------------
G
K
E-------------
S
--
T
-------
E
Y
-
H
L
H
H
------
Y
E
E
E
A
V
Y
V
L
S
G
K
G
T
--
L
T
M
-----
E
N
-
D
---------------------
Q
-------
Y
---
P
I
-
A
P
G
D
F
V
G
F
P
C
H
A
A
A
H
S
-
I
S
-
N
D
G
T
E
T
---
L
V
C
L
V
I
G
Q
-
R
L
--
D
Q
D
V
-
V
D
Y
-----------------------------------------------