@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu12539: (2016-06-19 )
MCKLCQTKKVIVEHTGIGVVFHPCPNCRSGTDLTPVIQKLEQMLTAGKARLNIYD
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....-.--..-.20.......------.-------------30......--..40........---50--.....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCKLCQT
K
K
V
-
I
V
EHT-G--
I
G
-
V
V
F
HPCPNCR------S-------------GT
D
L
T
P
V
I
--
Q
K
L
E
Q
M
L
T
AGK
A
---
R
---
L
NIYD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
75.71
16%
-216
- C5 -
2XSA
1
OGA_OCEGH
A:
[1-447]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
L
T
G
V
I
EGFYGRDWR
R
D
E
R
A
T
V
M
D
W
I
A
A
A
G
M
N
T
Y
I
Y
G
P
KDDVHVRARWR
V
P
Y
D
A
A
G
L
A
R
L
T
E
L
R
D
A
A
A
A
R
G
M
-------
V
--
F
Y
-
V
S
L
A
P
C
L
D
V
T
YS----
D
-------------
P
Q
D
R
A
A
L
L
--
A
R
V
D
Q
L
A
R
A
G
L
R
---
N
---
L
V
L
L
F
DDIPSVLPEADRHRFDS
F
A
E
A
Q
A
D
L
S
N
M
V
L
R
H
L
RGA
G
H
V
V
F
C
P
TEYCGRMAGGDPRGS
A
Y
L
Q
R
L
G
S
T
LDPA
I
D
I
F
W
TGPEIVSEEIV
A
A
H
L
A
A
V
G
E
V
L
RRRPVIWDNFHANDYDIRRVFAGPLGGRSRDILPLVA
G
W
I
T
N
P
N
NEAEAN
F
P
A
I
H
T
T
G
A
Y
L
A
DPDYA
P
E
R
A
I
A
A
A
V
A
A
W
QPRFRLAFGDGAVP
S
D
L
V
A
L
L
C
D
L
F
WQPFALG
P
E
T
T
R
I
L
S
A
L
R
A
A
L
TVPRPDPSD
P
A
W
R
A
A
L
E
D
L
R
D
L
K
R
R
I
N
K
L
F
T
L
M
T
E
IEN
R
D
L
F
H
T
F
H
N
Y
L
W
E
A
Q
E
E
V
G
H
L
V
A
Y
C
D
W
L
D
E
APPPGAVFPATNFYRRG
F
G
V
A
V
Q
D
I
L
QRDRQGRYHHGV
28
Fugue
73.57
23%
-173
- C5 -
4XDN
5
SCC4_YEAST
A:
[24-640]
G
D
K
L
S
I
S
Q
V
Y
H
L
A
Q
E
Y
R
D
H
A
Y
S
I
A
NKIGS
E
E
G
L
K
Q
Y
Y
G
L
M
N
M
S
I
Q
M
F
Q
L
L
K
T
KCTLS
V
L
E
D
S
K
V
T
F
E
M
V
E
L
L
I
Q
ETYN
F
D
L
A
E
L
Y
I
S
S
L
K
E
R
L
Q
T
H
QSDTDL
V
E
E
I
M
R
C
E
F
L
L
L
H
D
L
P
L
M
R
DS
K
F
H
Y
K
I
A
L
R
N
C
N
E
L
V
Q
Y
M
V
N
LQD
E
L
Y
Q
N
W
A
S
V
F
Q
Y
V
G
V
M
L
C
I
K
L
KQ
H
R
R
V
K
T
S
F
H
G
L
L
S
Q
CREKS
Q
W
K
W
F
L
N
L
C
Y
V
N
Y
L
L
N
E
RFPIP
E
D
A
L
Q
E
L
R
S
TELHTVG
P
E
L
Y
A
W
K
L
A
L
E
M
V
I
Q
L
C
K
DGNI
T
D
H
L
N
E
F
K
N
F
F
D
T
N
K
Q
S
L
V
T
N
E
-
G
--
K
G
-
C
V
I
K
I
M
P
R
I
A
------
L
-------------
K
V
E
L
P
M
I
F
H
Y
K
E
L
K
N
I
L
L
L
L
Q
S
---
V
S
Y
I
V
N
C
Y
D
E
K
G
N
F
S
R
K
F
L
P
K
V
Y
S
T
T
Q
K
L
I
K
N
I
A
A
G
GVS
M
N
E
L
D
S
R
I
Q
T
Y
K
S
I
L
E
F
C
E
F
Y
K
V
W
E
Q
T
L
L
K
GAVVLGPSPG
Y
V
R
L
L
Q
A
M
K
V
Q
F
E
GGGA
V
E
E
Y
T
R
L
A
Q
SGGTS
S
E
V
K
M
I
S
L
L
N
C
Y
T
V
Q
A
A
R
V
S
R
CSGDK
Q
G
E
L
V
E
Q
C
N
K
V
W
L
Q
V
E
K
L
L
Q
E
T
DLQFN
P
I
W
E
C
T
V
T
I
L
W
L
F
S
H
F
EPFSWNPLPCS
D
K
Q
R
A
E
Y
V
S
K
L
R
E
F
Y
S
S
N
KFVNRFKLKKA
L
L
L
Q
I
L
V
N
Y
L
G
G
R
M
LEHD
L
G
E
I
Y
A
I
S
A
K
C
F
D
M
C
R
QQGGM
R
K
V
Q
Y
V
I
G
I
W
H
L
M
N
C
T
V
A
MR
G
K
D
V
A
L
T
N
A
K
L
E
A
L
V
K
Q
I
T
S----------------------------------------
22
Fugue
69.37
13%
-213
- C5 -
7ODC
1
DCOR_MOUSE
A:
[44-296]
---------------------------------------------------------------------------------------------------------------------------------
D
L
G
D
I
L
K
K
H
L
R
W
L
K
A
LPR
V
T
P
F
Y
AVKCNDS
R
A
I
V
S
T
L
A
A
I
G
T
G
F
D
C
AS
K
T
E
I
Q
L
V
Q
G
L
GVPAERVIYANPCKQ
V
S
Q
I
K
Y
A
A
S
N
GVQ
M
M
T
F
D
S
E
I
E
L
M
K
V
A
R
AHPK
A
K
L
V
L
R
I
A
TK
F
G
A
T
LKT
S
R
L
L
L
E
R
A
K
E
L
N
I
-
D
V
I
-------
G
-
V
S
F
H
V
G
S
G
C
T
------
D
-------------
P
D
T
F
V
Q
A
V
--
S
D
A
R
C
V
F
D
M
A
T
E
V
GF
S
---
M
H
L
L
D
IGGGFPGSEDTKLK
F
E
E
I
T
S
V
I
N
P
A
L
D
K
YFPSDSG
V
R
I
I
A
E
P
G
RYYVASA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
65.84
20%
-64
- C5 -
1AJY
2
PUT3_YEAST
A:
[1-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
V
A
C
L
S
C
R
K
R
H
I
-
K
C
P
G
G
----------
N
P
C
Q
K
C
V
------
T
S
N
A
I
C
E
Y
L
E
P
S
KK
I
V
V
S
T
K
Y
L
--
Q
Q
L
Q
K
D
L
N
D
K
T
E
---
E
---
N
N
R
L
K
A
L
L
L
E
R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
61.59
23%
-143
- C5 -
1G6U
1
?
A:
[1-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
A
A
L
K
S
E
-
L
Q
A
L
K
-
K
--
E
G
-------
F
S
P
E
------
E
-------------
L
A
A
L
E
S
E
L
--
Q
A
L
E
K
K
L
A
A
L
K
S
---
K
---
L
Q
A
L
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
58.13
29%
-85
* C8 *
4MO1
1
REGQ_LAMBD
A:
[81-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
R
D
C
H
G
T
G
R
-
A
V
D
I
A
K
T
E
L
W
G
R
V
V
E
K
E
C
G
R
C
K
------
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
57.62
24%
-148
- C8 -
2BX9
1
RTPA_BACSU
A:
[12-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
K
C
E
R
A
G
E
-
I
E
------------
G
T
P
C
P
A
C
S
------
G
-------------
K
G
V
I
--
L
T
--
A
Q
G
Y
T
L
L
D
F
I
Q
K
---
H
---
L
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
57.34
26%
-166
- C8 -
2CTT
1
A:
[48-74]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
H
Y
C
G
G
S
G
M
-
E
T
I
N
T
-
G
--
P
F
-
V
M
R
S
T
C
R
R
C
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
55.75
16%
-165
- C5 -
1CEE
-
B:
[1-59]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
K
I
S
K
A
D
-
I
G
A
P
S
-
G
--
F
K
-
H
V
S
H
V
G
W
D
P
Q
------
N
-------------
G
F
D
V
N
N
L
D
--
P
D
L
R
S
L
F
S
R
A
G
I
---
S
---
E
A
Q
L
T
DAETSK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
52.55
17%
-77
- C5 -
3GA8
2
MQSA_ECOLI
A:
[33-67]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
I
H
G
L
Y
C
V
H
C
E
------
E
-------------
S
I
M
N
K
E
E
S
--
D
A
F
M
A
Q
V
K
A
F
R
A
---
S
---
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
52.41
25%
-171
- C8 -
1EXK
1
A:
[31-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
T
C
H
G
S
G
Q
-
V
Q
M
R
Q
-
G
--
F
F
-
A
V
Q
Q
T
C
P
H
C
Q
------
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
50.98
30%
-126
- C8 -
3LCZ
1
?
A:
[12-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
N
C
N
G
S
G
R
-
E
E
------------
P
E
P
C
P
K
C
L
------
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
46.11
21%
-182
- C6 -
2AVU
1
FLHC_ECOLI
E:
[137-160]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
N
C
C
G
G
N
F
I
-
T
H
A
H
Q
-----
P
-
V
G
S
F
A
C
S
L
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
46.09
20%
-126
- C5 -
4G9I
1
?
A:
[158-187]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
D
F
C
R
S
E
Y
E
-
D
P
L
N
R
-
R
--
Y
H
-
A
E
P
T
A
C
P
V
C
G
------
P
-------------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
45.74
34%
-
- C5 -
3J1R
-
?
A:
[8-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
P
V
I
--
A
T
L
L
L
I
L
I
A
V
A
A
---
A
---
V
L
L
Y
T
W
V
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
43.69
17%
-120
- C5 -
3VTH
1
?
A:
[163-192]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
E
K
C
S
R
E
Y
H
-
D
P
H
D
R
-
R
--
F
H
-
A
Q
P
V
A
C
F
D
C
G
------
P
-------------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
43.64
19%
-145
- C3 -
1DL6
1
TF2B_HUMAN
A:
[14-39]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
N
H
P
D
A
I
L
-
V
E
D
Y
R
-
A
---
G
-
D
--
M
I
C
P
E
C
G
------
L
-------------
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
43.09
18%
-39
- C5 -
4R1D
-
?
B:
[1-301]
--------------------------------------------------------------------------------------------------------MDKTG
W
I
T
H
C
F
GR
F
L
I
D
L
P
PD
A
V
I
N
A
G
Y
Y
L
WGDRIEYLDDK
P
T
E
L
A
A
R
V
D
R
L
E
Q
E
W
R
T
QRHKSKGNMFL
R
K
I
D
FGNE
S
V
G
L
L
S
WSSEVASK
T
Y
L
L
D
T
Y
V
T
S
K
P
T
W
H
V
Y
R
W
K
G
K
V
S
VDR
E
Q
H
A
V
E
I
S
R
A
L
A
R
N
L
R
S
R
A
PKEIPS
E
P
G
F
C
I
D
H
A
Y
I
A
G
D
S
F
Q
--
V
E
R
F
-
G
--
V
G
-
V
T
F
P
E
H
P
G
A
R
F
E
F
R
S
S
T
-------------
G
A
E
L
N
S
L
L
--
E
R
V
D
G
F
V
Q
N
M
L
S
---
T
---
F
A
G
M
E
TL
R
K
G
K
H
P
V
GSLP
G
E
E
Y
L
V
A
G
S
D
KG
Q
R
G
Y
T
F
M
W
E
V
QGKEESLTE
P
N
L
T
A
G
L
A
V
L
E
RSNENGKPPPPAFKS
D
K
E
A
L
E
L
W
D
T
I
V
D
S
IRVRPTS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
42.63
13%
-11
* C5 *
4WWR
-
BAG6_HUMAN
A:
[1053-1105]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
L
L
L
S
E
A
V
-
S
R
A
A
K
-
A
--
A
G
-
A
R
P
L
T
S
P
E
S
L
------
S
-------------
R
D
L
E
A
P
E
V
--
Q
E
S
Y
R
Q
Q
L
R
S
D
I
---
Q
---
K
R
L
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
40.86
19%
-121
- C6 -
2MRE
1
B:
[6-31]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
V
D
C
P
V
C
G
------
V
-------------
N
I
P
E
S
H
I
N
--
K
H
L
D
S
C
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------