@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu14072: (2016-06-22 )
MATYNAIIYSGGYSQTLRDFAGWTGDLLTTIQDMKLHAQEFNSPYDAAMKIIGNMYQFSLDDLFSDVDAINLANKTSVGANAQPLNIAIRDYYSNNDCMNRFTQFVNNRFDGSLDKIFSEAEYYLNTNLDPVVVPIRLAFKRAFDVEDYSEEIGKITAQAFRDVIEKKMISE
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........--10----......-.----.20------.....--.-----..30-.......--.40........----.50......--------------------..-60--...--....------.-.70..----..------....80.----......--.90...--....----.100.-------....-.-..110.......-120...-.-...-..-130--.--...---------------...-.140...--....-------150.......160.......170-------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA
T
Y
N
A
I
I
Y--SG----G
Y
S
Q
T
L
-
R
----
D
FA------GW
T
G
D
--
L
-----
L
T
T
I
-
Q
D
M
K
L
H
A
--
Q
E
-FN
S
P
Y
D
A
A
----
M
K
I
I
G
N
M
Y
Q
--------------------
F
S
-
L
---
D
D
L
--FS
D
V
------
D
-
A
INLA----NK------TSVGANA----
Q
P
L
N
I
A
--
I
R
D
YYS--N
N
D
C
----
M
N
R
-
F
-------
T
Q
F
V
-N-NRFDG
S
L
D
K
I
F
S
-
E
--
A
E
Y
-
Y
-LNT-NL-D
P
---
V
--
V
V
P
---------------
I
R
L
-
A
F
K
RAF
D
--
V
E
D
Y
-------
S
E
E
I
G
K
I
T
A
Q
A
F
R
D
V
I
E
K
K
MISE-------------------------------------------------------------------------------------------------------------
18
Fugue
69.91
22%
-96
- C- -
3WOZ
-
CLAP2_MOUSE
A:
[645-869]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TED
V
A
E
V
L
N
R
C
A
--
S
S
----
N
W
S
E
R
K
-
E
----
G
L
L
------
G
L
Q
N
L
--
L
K
N
QRT
L
S
R
I
-
E
L
K
R
L
C
E
I
F
T
R
M
F
A
D
P
H
G
K
V
F
S
M
F
L
E
T
L
V
D
F
I
Q
--------------------
V
H
-
K
---
D
D
L
QD
W
L
F
V
------
L
-
L
T
Q
L
L
----
K
K
M
G
ADLL
G
S
V
Q
A
K
V
----
Q
K
A
L
D
I
--
T
R
E
S
F
P
--
N
D
L
Q
----
F
N
I
-
L
M
------
R
F
T
V
-
D
-
Q
T
Q
T
P
S
L
K
V
K
V
A
-
I
--
L
K
Y
-
I
-
E
T
L
A
K
Q
M
D
P
---
R
--
D
F
T
NS
S
E
-----------
T
R
L
-
A
V
S
R
V
I
T
W
T
T
E
P
K
-------
S
S
D
V
R
K
A
A
Q
S
V
L
I
S
L
F
E
L
N
T
P
E
F
T
M
L
L
G
A
LP
K
T
F
Q
D
G
A
T
K
L
L
HN----------------------------------------------------------------------------------------
23
Fugue
60.21
17%
-69
- C2 -
3NKU
2
DRRA_LEGPN
A:
[12-205]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
L
Y
S
D
E
R
D
--
K
P
----
L
L
S
P
T
A
Q
K
----
K
F
E
------
E
Y
Q
N
K
--
L
-----
A
N
L
S
-
K
I
I
R
E
N
E
--
G
N
-
E
V
S
P
W
Q
E
W
----
E
N
G
L
R
Q
I
Y
K
---------------------
E
M
I
---
Y
D
A
--
F
D
A
L
GVEMPK
D
M
E
V
H
F
A
----
G
S
------
S
D
L
D
A
F
V
I
V
KN
D
E
D
I
K
K
--
V
K
P
V
F
D
A
L
N
N
L
C
----
Q
R
I
-
F
-------
T
A
S
I
-
N
P
S
R
L
I
G
T
P
D
D
L
F
G
M
L
--
K
D
G
M
V
-
A
D
V
-
E
A
-
T
A
M
--
S
--
I
L
T
---------------
S
K
P
-
V
L
P
R
Y
------
E
L
-------
G
E
E
L
R
D
K
I
K
Q
E
P
S
-----------------------------------------------------------------------------------------------------------------------
24
Fugue
51.54
20%
-84
* C5 *
4K6L
2
?
G:
[1-224]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDFVYRVD
S
T
P
P
D
V
I
F
R
--
D
G
FSLL
G
Y
N
R
N
F
-
Q
----
Q
F
I
SGRSCS
G
G
S
S
D
SR
Y
-----
I
A
T
T
-
S
S
-
V
N
Q
T
--
Y
A
-
I
A
R
A
Y
Y
S
R
----
S
T
F
K
G
N
L
Y
R
--------------------
Y
Q
-
I
RAD
N
N
F
--
Y
S
L
L
------
P
-
S
I
T
Y
L
----
E
T
------
Q
G
G
H
F
N
A
----
Y
E
K
T
M
M
RL
Q
R
E
Y
V
S
--
T
L
S
I
LPEN
I
Q
K
-
A
-------
V
A
L
V
-
Y
-
D
S
A
T
G
L
V
K
D
G
V
S
-
T
MN
A
S
Y
-
L
G
L
S
T
-
T
S
-
N
P
---
G
--
V
I
P
FLPEPQTYTQQRIDA
F
G
P
-
L
I
S
S
C
F
S
--
I
G
S
V
CHSHRGQ
R
A
D
V
Y
N
M
S
F
Y
D
A
R
P
V
I
E
L
I
L
S
K
--------------------------------------------------------------------------------------------------------------
25
Fugue
51.47
13%
-136
- C3 -
4XGC
-
?
C:
[1-676]
MQ
P
F
Y
E
E
Y
R
K
A
W
N
Q
I
N
D
H
I
A
D
L
Q
H
R
S
Y
A
R
T
L
E
Q
L
V
D
F
V
V
G
Q
A
E
RDE
V
L
P
T
A
A
L
LTGINQPDH
L
S
Q
F
T
A
L
T
Q
R
L
H
A
Q
RA
A
M
V
C
V
L
Q
SRDCAT
L
K
A
A
V
E
T
L
V
F
G
L
V
E
D
N
A
E
V
E
QLRRSQCT
M
K
Q
L
K
S
W
Y
T
N
N
FDSEQ
K
R
R
Q
L
V
V
I
L
PDFECFN
A
S
V
L
Q
D
L
I
L
I
L
S
A
H
CGSLP
F
V
L
V
L
GVATAM
T
A
V
H
G
T
L
P
Y
H
V
S
S
K
IR
L
R
V
F
Q
T
QA
A
P
T
G
L
N
E
V
L
D
K
VLLSPKYA
F
H
L
S
G
K
T
F
K
F
L
T
H
I
F
L
Y
YDFS
I
H
G
F
I
Q
G
F
K
Y
C
L
M
E
H
F
F
GGNAFALCTD
Y
S
K
A
L
G
R
I
K
Q
LT
H
E
D
M
E
T
I
R
R
LPS
F
R
P
Y
V
E
Q
I
N
D
--
C
K
----
R
I
I
A
V
L
-
T
----
D
D
D
------
Y
L
K
K
K
--
L
-----
P
Q
L
L
-
R
D
C
L
L
H
F
--
L
L
-
F
R
C
S
L
E
F
L
----
T
E
L
V
G
D
L
P
R
--------------------
C
P
-
L
---
G
K
L
--
R
R
E
L
------
Y
-
V
N
C
L
N
----
R
-----------------------
A
--
I
I
S
T
P
E
--
Y
K
E
C
----
L
Q
M
-
L
-------
S
F
L
S
-
K
-
D
E
F
V
A
K
V
N
R
A
L
E
-
R
--
T
E
Q
-
F
-
L
V
E
-
E
I
-
A
P
---
L
EL
G
E
A
---------------
C
T
A
-
V
L
R
P
K
L
E
--
A
I
R
L
-------
A
V
D
E
V
G
R
A
L
Q
K
T
L
Q
L
I
E
T
Q
I
V
Q
D
HLRALQDAPPIHELFVFSD
I
A
T
V
R
R
N
I
I
GAP
R
A
A
L
H
T
A
L
N
NPHFP
D
L
S
V
V
Y
K
L
H
L
E
C
GRMIN
L
F
D
W
L
Q
A
F
R
S
V
VP
Q
I
Q
A
R
F
T
R
A
V
A
E
L
Q
F
L
GYIKMSKRKTD
H
A
T
R
LTW
27
Fugue
50.48
13%
-118
- C5 -
3FNI
-
A:
[2-155]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
A
E
T
S
I
G
V
F
Y
--
V
S
----
E
Y
G
---------
Y
S
D
------
R
L
A
Q
A
--
I
-----
I
N
G
I
-
T
K
T
G
V
G
V
--
D
V
-
V
D
------------
L
G
A
A
V
D
L
--------------------
Q
E
-
L
---
R
E
L
--
V
G
R
C
------
T
-
G
L
V
I
G
M
---
S
P
------
A
A
S
A
A
S
I
----
Q
G
A
L
S
T
--
I
L
G
S
V
N
--
E
K
Q
A
----
V
G
I
-
F
-------
E
T
G
-------
G
G
D
D
E
P
I
D
P
-
L
--
L
S
K
-
F
-
R
N
L
-
G
L
-
T
T
---
A
--
F
P
A
---------------
I
R
I
-
K
Q
T
P
T
E
N
--
T
Y
K
L
-------
C
E
E
A
G
T
D
L
G
Q
W
V
T
R
D
R
L
E
H
H
----------------------------------------------------------------------------------------------------------------
13
HHSearch
38.36
24%
-452
- C7 -
3M91
-
PUP_MYCTU
B:
[32-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
--------------------
E
E
-
T
---
D
D
L
--
L
D
E
I
------
D
-
D
V
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
38.04
31%
-24
- C7 -
3NZT
8
?
A:
[83-164]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
H
D
S
I
----
D
K
A
I
G
E
L
Y
Q
L
S
A
-----------------
F
T
-
L
---
D
N
M
--
H
S
D
E
------
I
-
I
L
N
--------------
T
S
M
P
L
S
A
----
N
D
N
D
I
Q
--
E
A
D
F
G
S
--
S
N
S
G
R
---
M
K
R
V
Y
-------
R
K
G
L
-
S
-
A
R
Y
-
G
K
I
M
Q
I
I
S
-
G
--
I
H
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
37.81
9%
-104
* C6 *
3P42
-
?
A:
[3-236]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
G
M
V
T
I
Y
L
PGEQ
Q
T
L
S
V
G
PVEN
V
A
Q
L
V
T
Q
P
Q
L
R
D
R
L
W
--
W
P
----
G
A
L
L
T
D
-
S
----
A
A
K
------
A
K
A
L
K
--
D
-----
Y
Q
H
V
M
A
Q
L
A
S
W
E
--
A
E
-
A
D
D
D
V
A
A
T
----
I
K
S
V
R
Q
Q
L
L
NLNITGRLPVKLDPD
F
V
R
V
D
E
N
-
S
---
N
P
P
--
L
V
G
D
------
Y
-
T
L
Y
T
V
Q
RPV
T
I
------
T
L
L
G
A
V
S
----
G
A
G
Q
L
P
--
W
L
A
G
R
S
--
V
T
D
Y
----
L
Q
D
-
H
P
R
L
AGAD
K
N
N
V
M
V
-
I
T
P
E
G
E
T
V
V
A
P
V
-
A
--
L
W
N
-
K
-
R
H
V
-
E
P
-
P
P
G
S
Q
L
--
W
L
G
---------------
F
S
A
-
H
-
V
L
P
E
K
--
Y
A
D
L
-------
N
D
Q
I
V
S
V
L
T
Q
R
V
P
E
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
32.34
31%
-81
- C7 -
2DHR
-
FTSH_THET8
A:
[382-429]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
-
G
-
M
H
P
-
E
F
-
G
P
---
V
--
A
Y
A
---------------
V
R
E
D
T
Y
L
G
G
Y
D
--
V
R
Q
Y
-------
S
E
E
T
A
K
R
I
D
E
A
V
R
R
L
I
E
E
Q
-----------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
32.01
31%
-83
- C7 -
4CBV
-
?
A:
[155-220]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
H
D
I
L
Y
I
E
T
T
----
G
V
S
H
K
L
-
R
I
I
G
K
N
F
A
------
K
E
F
Y
G
--
T
-----
M
T
D
I
-
Q
E
K
D
K
H
T
--
Q
R
-
F
Y
S
P
H
K
S
F
----
L
V
N
I
G
N
I
R
E
--------------------
I
D
-
R
---
K
N
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
30.21
13%
-149
- C7 -
2JPQ
-
Y2129_VIBPA
A:
[48-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
-------
A
A
S
Q
R
K
L
I
A
E
K
F
A
Q
A
L
M
S
S
L
E
---------------------------------------------------------------------------------------------------------------
9
HHSearch
29.64
17%
-142
- C7 -
2JUZ
-
Y840_HAEIN
A:
[48-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
-------
P
Q
T
Q
C
E
A
L
A
Q
A
F
S
N
S
L
I
N
A
V
K
---------------------------------------------------------------------------------------------------------------
11
HHSearch
29.31
9%
-206
- C7 -
2JRX
-
YEJL_ECOLI
A:
[49-70]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
A
P
A
Q
R
Q
A
I
A
N
S
F
A
R
A
L
Q
S
S
I
N
---------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
28.92
31%
-46
- C7 -
4EIW
-
FTSH_THET8
A:
[391-438]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
-
G
-
M
H
P
-
E
F
-
G
P
---
V
--
A
Y
A
---------------
V
R
E
D
T
Y
L
G
G
Y
D
--
V
R
Q
Y
-------
S
E
E
T
A
K
R
I
D
E
A
V
R
R
L
I
E
E
Q
-----------------------------------------------------------------------------------------------------------------
26
Fugue
28.13
13%
-72
- C4 -
4WLP
-
NFRKB_HUMAN
B:
[40-153]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--------------------
D
L
-
L
---
E
D
P
--
E
I
F
F
------
D
-
V
V
S
L
S
----
T
W
------
Q
E
V
L
S
D
S
----
Q
R
E
H
L
Q
--
Q
F
L
P
Q
F
--
P
E
D
S
----
A
E
Q
-
Q
-------
N
E
L
I
-
L
-
A
L
F
S
G
E
N
F
R
F
G
N
-
P
--
L
H
I
-
A
-
Q
K
L
-
F
R
-
D
G
---
H
--
F
N
P
---------------
E
V
V
-
K
Y
R
Q
L
C
F
--
K
S
Q
Y
-------
K
R
Y
L
N
S
-
Q
Q
Q
Y
F
H
R
L
L
K
Q
I
L
A
S
--------------------------------------------------------------------------------------------------------------
14
HHSearch
27.98
22%
-233
- C7 -
3M9D
-
PUP_MYCTU
G:
[31-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
T
--------------------
E
E
-
T
---
D
D
L
--
L
D
E
I
------
D
-
D
V
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
27.65
33%
-246
- C7 -
1DTC
-
HLD_STAAU
A:
[2-13]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
D
--
I
-----
I
S
T
I
-
G
D
L
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
26.69
13%
-56
- C7 -
2JUW
-
Y2176_SHEON
A:
[48-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
-------
P
S
E
S
R
Q
A
V
A
E
Q
F
A
K
A
L
A
Q
S
V
K
---------------------------------------------------------------------------------------------------------------
12
HHSearch
24.20
10%
-144
- C7 -
2JR2
-
Y2611_COLP3
A:
[48-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-------
P
E
S
K
R
V
A
V
V
D
N
F
T
K
A
L
K
Q
S
V
----------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
23.88
51%
-31
- C7 -
3DCN
-
CUTI1_COLGL
A:
[127-155]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
A
I
V
--
S
G
----
G
Y
S
Q
G
T
-
A
----
V
M
A
------
G
S
I
S
G
--
L
-----
S
T
T
I
-
K
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------