@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu14640: (2016-06-23 )
MEYQYPMNEDWTTEEAVDVIAFFQQVELAYEKGADREELLKAYRRFKEIVPGKAEEKKLCGEFEEQSTYSPYRTVKQARESDHAKIKM
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-........-.--20....-....30-..-..-.....40...------------.--....--50...----....-.60........70--....-....80--.-.......-----------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEYQYPMNED--W
T
T
E
E
A
V
D
-
V
--
I
A
F
F
Q
Q
-
V
E
L
A
Y
--EK-GA-
D
R
E
E
L
L
K
A
Y
R
------------
R
--
F
K
E
I--VPGK
A
----
E
E
K
K
-
L
C
G
E
F
E
EQSTY
S
P
--
Y
R
T
V
-
K
Q
A
RE---S-DHAKIKM-----------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
88.68
49%
-112
- C1 -
2OY9
-
Y2638_BACHD
A:
[6-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
P
I
S
L
D
--
W
S
T
E
E
V
I
D
-
V
--
V
H
F
F
Q
A
-
I
E
Q
A
Y
--
D
Q
-
G
I
-
A
R
E
D
L
L
G
K
Y
R
------------
R
--
F
K
E
I
--
V
P
S
K
S
----
E
E
K
Q
-
L
F
R
A
Y
E
Q
E
N
D
V
S
C
--
Y
Q
T
I
-
K
K
A
R
E
---
E
-
M
E
E
H
I
Q
M
-----------------------------------------------------------------------------------------------------------------------------------
28
Fugue
86.76
50%
-104
- C1 -
2OY9
-
Y2638_BACHD
A:
[6-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
P
I
S
L
D
--
W
S
T
E
E
V
I
D
-
V
--
V
H
F
F
Q
A
-
I
E
Q
A
Y
--
D
Q
-
G
I
-
A
R
E
D
L
L
G
K
Y
R
------------
R
--
F
K
E
I
--
V
P
S
K
S
----
E
E
K
Q
-
L
F
R
A
Y
E
Q
E
N
D
V
S
C
--
Y
Q
T
I
-
K
K
A
R
E
---
E
M
E
E
-
H
I
Q
------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
86.64
51%
-102
- C1 -
2OY9
-
Y2638_BACHD
A:
[8-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
S
L
D
--
W
S
T
E
E
V
I
D
-
V
--
V
H
F
F
Q
A
-
I
E
Q
A
Y
--
D
Q
-
G
I
-
A
R
E
D
L
L
G
K
Y
R
------------
R
--
F
K
E
I
--
V
P
S
K
S
----
E
E
K
Q
-
L
F
R
A
Y
E
Q
E
N
D
V
S
C
--
Y
Q
T
I
-
K
K
A
R
E
---
E
-
M
E
E
H
I
Q
------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
83.41
54%
-102
- C1 -
2OY9
1
Y2638_BACHD
B:
[9-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
L
D
--
W
S
T
E
E
V
I
D
-
V
--
V
H
F
F
Q
A
-
I
E
Q
A
Y
--
D
Q
-
G
I
-
A
R
E
D
L
L
G
K
Y
R
------------
R
--
F
K
E
I
--
V
P
S
K
S
----
E
E
K
Q
-
L
F
R
A
Y
E
Q
E
N
D
V
S
C
--
Y
Q
T
I
-
K
K
A
R
------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.86
30%
0
- C- -
4OKU
-
?
A:
[100-204]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
L
Q
S
P
N
A
V
D
K
Q
--
L
A
A
H
A
V
-
L
E
M
P
Y
--
K
K
-
G
S
T
N
T
A
D
G
L
K
A
C
K
------------
Q
I
L
F
T
G
S
--
R
P
G
R
E
----
H
V
P
K
-
L
V
I
G
M
T
D
G
E
S
D
S
D
--
F
R
T
V
-
R
A
A
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
62.86
30%
0
- C- -
4OKR
-
?
A:
[63-167]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
L
Q
S
P
N
A
V
D
K
Q
--
L
A
A
H
A
V
-
L
E
M
P
Y
--
K
K
-
G
S
T
N
T
A
D
G
L
K
A
C
K
------------
Q
I
L
F
T
G
S
--
R
P
G
R
E
----
H
V
P
K
-
L
V
I
G
M
T
D
G
E
S
D
S
D
--
F
R
T
V
-
R
A
A
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
60.63
33%
-208
- C1 -
2BW3
-
?
A:
[118-191]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
-
M
--
I
K
F
F
I
K
-
V
K
A
E
Y
--
G
E
-
H
V
-
N
V
E
E
L
L
P
S
P
I
------------
T
--
L
S
R
K
--
V
T
S
D
A
----
K
E
K
K
A
L
I
G
-------------
R
E
I
-
K
S
A
V
E
---
K
-
D
G
A
---------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.54
33%
-127
- C1 -
4D1Q
3
?
A:
[42-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
-
M
--
I
K
F
F
I
K
-
V
G
A
E
Y
--
G
E
-
H
V
-
N
V
E
E
L
L
P
S
P
I
------------
T
--
L
S
R
K
--
V
T
S
D
A
----
K
E
K
K
A
L
I
G
-------------
R
E
I
-
K
S
A
V
E
---
K
-
D
G
A
---------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
50.94
31%
-141
- C1 -
2RP5
-
CEP1_CAEEL
A:
[599-631]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
D
-
M
--
I
R
E
F
E
K
-
H
N
D
I
F
--
E
R
I
G
I
-
D
S
S
K
L
S
K
Y
Y
E
------------
A
--
F
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
50.50
12%
-78
- C1 -
2BL8
2
?
A:
[4-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
A
K
Q
I
V
H
E
L
Y
N
D
I
S
I
--
S
K
D
P
K
Y
S
D
-
I
--
L
E
V
L
Q
K
-
V
Y
L
K
L
--
E
P
-
S
P
-
L
I
N
R
L
V
N
Y
L
Y
------------
F
--
T
A
Y
T
N
K
I
R
F
T
E
----
Y
Q
E
E
-
L
I
R
N
L
S
E
I
G
R
T
A
G
--
I
N
G
L
-
Y
R
A
D
Y
---
G
-
D
K
S
Q
F
-------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
44.67
32%
-129
- C1 -
2MPE
-
?
A:
[61-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
A
H
P
L
N
L
A
L
T
W
N
T
D
E
I
E
R
-
L
--
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
44.01
17%
-51
* C2 *
4GUC
1
?
A:
[6-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RFLDTWR
W
Q
N
Y
F
L
L
H
H
N
--
A
D
F
I
E
E
L
A
-
V
GD
L
K
H
G
D
T
-
F
D
V
T
I
--
Y
T
-
G
G
-
K
D
T
G
I
V
K
I
Y
Q
L
S
G
N
ENDEINLH
R
--
Y
K
T
I
--
Y
D
S
G
L
----
K
H
N
Y
-
G
R
F
V
T
P
I
T
K
A
Y
N
P
G
T
Y
V
A
V
M
K
L
G
E
N
Y
Y
Y
G
-
G
S
F
K
I
S
K
-----------------------------------------------------------------------------------------------------------------------------------
30
Fugue
41.95
10%
-72
- C1 -
4CZX
-
B:
[30-136]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
E
N
G
R
I
A
R
L
M
F
K
L
S
V
V
N
E
R
G
D
H
N
--
W
S
E
T
G
E
R
L
-
L
--
L
K
L
F
R
D
-
Y
V
F
H
Q
V
D
A
D
-
G
K
-
A
R
L
D
T
N
H
Y
L
N
------------
C
--
L
S
K
L
--
D
A
S
S
E
----
E
Q
I
L
-
L
T
S
R
D
N
A
T
V
F
V
V
S
--
Y
R
S
I
-
R
Q
M
L
D
---
R
-
A
Y
G
E
L
G
K
-----------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
41.05
17%
-136
* C1 *
1B0N
2
SINI_BACSU
B:
[16-39]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
L
-
M
V
E
A
K
--
E
A
-
N
I
-
S
P
E
E
I
R
----------------
K
--
Y
L
L
L
--
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
39.56
13%
-158
- C1 -
4BWV
1
?
A:
[203-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
P
L
A
-
Y
--
W
E
F
R
D
C
W
D
-
Y
--
L
T
K
Y
S
L
P
Y
H
P
L
H
--
D
Q
-
G
F
-
P
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
39.09
38%
-193
- C1 -
1ZL8
-
?
A:
[39-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
F
F
G
A
-
V
R
E
V
Y
--
E
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
38.37
17%
-151
- C1 -
1F1F
1
CYC6_ARTMA
A:
[68-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--
L
S
P
L
Q
I
E
D
-
V
--
A
A
Y
V
V
D
-
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
38.30
13%
-202
- C1 -
1SUR
-
CYSH_ECOLI
A:
[178-210]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
P
I
I
-
D
--
W
D
N
R
T
I
Y
Q
-
Y
--
L
Q
K
H
G
L
K
Y
H
P
L
W
--
D
E
-
G
Y
-
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
36.44
16%
-102
- C1 -
5DBJ
2
?
D:
[5-441]
----------------------------------------------------------------------------------------------SDHDYDVVIIGGGPAGSTMASYLAKAGVKCAVFEKELFEREHVGESLVPATTPVLLEIGVMEKIEKANFPKKFGAAWTSADSGPEDKMGFQGLDHDFRSAEILFNERKQEGVDRDFTFHVDRGKFDRILLEHAGSLGAKVFQGVEIADVEFLSPGNVIVNAKLGKRSVEIKAKMVVDASGRNVLLGRRLGLREKDPVFNQFAIHSWFDNFDRKSATQSPDKVDYIFIHFLPMTNT
W
V
W
Q
I
P
I
T
E
T
--------
I
T
-
S
--
V
G
V
V
T
Q
-
K
Q
N
Y
T
--
N
S
-
D
L
-
T
Y
E
E
F
F
W
E
A
V
------------
K
--
T
R
E
N
--
L
H
D
A
L
----
K
A
S
E
-
Q
V
R
P
F
K
K
E
A
D
Y
S
----------------------
Y
G
M
KEVCGDSFVLIGDAARFVDPIFSSGVSVALNSARIASGDIIEAVKNNDFSKSSFTHYEGMIRNGIKNWYEFITLYYRLNILFTAFVQDPRYRLDILQLLQGDVYLEVLDKMREIIAAVESDPEHLWHKYLG
33
Fugue
35.67
15%
-37
- C1 -
5DA0
2
?
A:
[14-484]
QREWFAN
P
R
K
D
V
L
A
G
I
V
V
A
L
A
L
I
P
E
A
I
A
F
S
I
I
A
GVD
P
Q
V
G
L
Y
A
S
F
I
I
A
L
I
T
A
F
LGGRPG
M
I
S
A
A
T
G
A
M
A
L
L
M
T
G
L
V
K
D
HGIQY
L
F
A
A
T
V
L
T
G
V
L
Q
V
V
F
G
W
A
KLARYLKFVP
R
S
V
M
V
G
F
V
N
A
L
A
I
L
I
F
M
A
Q
LPQFVGAN
W
Q
M
Y
A
M
V
A
A
G
L
A
I
I
Y
L
L
P
L
V
F
KAMP
S
A
L
V
A
I
V
V
L
T
V
V
A
V
V
T
GADVKTVGDMGTLPTALPHFQFPQVPLT
F
E
T
L
A
I
I
F
P
V
A
L
T
L
S
L
V
G
L
L
E
S
L
L
T
A
Q
L
I
D
E
R
TDTTSD
K
N
V
E
S
R
G
Q
G
V
A
N
I
V
T
G
F
F
G
G
M
A
G
C
A
M
I
G
Q
S
M
I
N
V
T
S
GGRG
R
L
S
T
F
V
A
G
A
F
L
M
V
L
I
L
A
L
Q
P
L
L
V
Q
IP
M
A
A
L
V
A
V
M
M
V
V
A
I
S
T
F
DW
G
S
L
R
F
P
K
G
E
T
--
V
V
M
L
A
T
V
A
-
V
--
T
V
F
T
H
D
-
L
S
L
G
V
--
L
I
-
G
V
-
V
L
S
A
L
F
F
A
R
K
V
S----------
Q
--
L
S
Q
V
--
T
P
V
D
E
VDG
T
R
T
Y
R
-
V
R
G
Q
L
F
F
V
S
T
H
D
F
--
L
H
Q
F
-
D
F
T
H
P
---
A
-
R
R
V
V
I
D
L
SD
A
H
F
WD
G
S
A
V
G
A
L
D
K
V
M
L
K
F
M
R
Q
G
T
S
V
E
L
R
GL
N
A
A
S
A
T
LVERL---------------------------------------------------------------------------------------