@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu15240: (2016-06-23 )
MNPGQDREKIVNIEERIPKIKEQRKQKANRRLISFIMLFFIMVLIIVYLQTPISKVSTISVTGNENVSKKEIIDLSDINSGDTEFWSLDKQKTEKKIQQNKLVKKAEISKSLPNKINIAIEEYKAIAYLEKDDVYYEVLENGSVLPNEVTPDDAGPILVNWTNAKKRSQMAKQLDALSNSLKQSISEIYYTPVKMDENRIKLYMNDGYVVTASIKTFADRMKTYPSIISQLSSNKKGIIHLEVATYFEEFGKNDKAAKKEDEN
Atome Classification :
(20 SA)
--------------------------------------------------.....---....10.....------...20........30..---......40........50........60...-.-.----.-..70....-..-..80........90....---..----.-.100..-----------------......110-----.---.--.--....120...-------....130.......140.-----......150-.--..--......160..-.-.---...170.......180---.........190.......200.......210.------......220--.......230-----.-----------.......240.....-..250...--....260.--------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------MNPG
Q
---
D
R
E
K
I
V
N
I
E
E
R
------
I
P
K
I
K
E
Q
R
K
Q
K
A
N
R
R
L
I
---
S
F
I
M
L
F
F
I
M
V
L
I
I
V
Y
LQTPISK
V
S
T
I
S
V
TGN-E-N----V-SKK
E
I
I
D
L-SD-INSGDTEFWSL
D
K
Q
K
T
E
K
---
K
I
----
Q
-
Q
N
-
K
L
V
-----------------
K
K
A
E
I
S
K
SL-----P---N--
K
--
I
N
I
A
I
E
E
Y
K
A
-------
I
A
Y
L
EKD
D
V
Y
Y
E
V
L
ENGS-----VLPNEVT---P--DD--AG
P
I
L
V
N
WT
N
A
-
K
-
K
---
R
S
Q
M
A
K
Q
L
D
A
L
S
N
S
-----
L
K
Q
S
I
S
E
I
YYTPVKMDE
N
R
I
K
L
Y
MND
G
Y
V
V
T
A
S
------
I
K
T
F
A
D
R
M
K
--
T
Y
P
S
I
I
S
Q
L
------S-----------SNKK
G
I
I
H
L
E
V
A
T
Y
F
-
E
E
FGKNDK--AAKKEDEN--------------------------------
1
PsiBlast_PDB
86.21
39%
-111
- C3 -
1YR1
-
DIVIB_GEOKA
A:
[117-233]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
R
R
-------
I
A
Y
V
Y
D
R
Q
T
F
F
P
L
L
E
N
G
R
-----
L
L
K
Q
E
G
T
KTA
P
--
S
D
--
A
-
P
V
L
V
G
W
K
D
G
-
D
-
A
---
I
A
E
M
T
G
Q
L
A
E
L
P
A
A
-----
V
L
G
A
M
S
E
I
H
Y
K
P
T
R
E
Y
E
D
R
V
I
V
Y
M
N
D
G
Y
E
V
S
A
T
------
I
R
Q
F
A
D
K
L
S
--
H
Y
P
A
I
A
A
A
L
------
D
-----------
R
N
V
K
--------------------------------------------------------------
2
PsiBlast_PDB
86.13
39%
-116
- C3 -
2ALJ
-
DIVIB_GEOKA
A:
[117-233]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
R
R
-------
I
A
Y
V
Y
D
R
Q
T
F
F
P
L
L
E
N
G
R
-----
L
L
K
Q
E
G
T
KTA
P
--
S
D
--
A
-
P
V
L
V
G
W
K
D
G
-
D
-
A
---
I
A
E
M
T
G
Q
L
A
E
L
P
A
A
-----
V
L
G
A
M
S
E
I
H
Y
K
P
T
R
E
Y
E
D
R
V
I
V
Y
M
N
D
G
Y
E
V
S
A
T
------
I
R
Q
F
A
D
K
L
S
--
H
Y
P
A
I
A
A
A
L
------
D
-----------
R
N
V
K
--------------------------------------------------------------
7
HHSearch
83.45
38%
-111
- C3 -
1YR1
-
DIVIB_GEOKA
A:
[116-229]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
W
R
R
-------
I
A
Y
V
Y
D
R
Q
T
F
F
P
L
L
E
N
G
R
-----
L
L
K
Q
E
G
T
KT-
A
--
P
S
--
D
A
P
V
L
V
G
W
K
D
G
-
D
-
A
---
I
A
E
M
T
G
Q
L
A
E
L
P
A
A
-----
V
L
G
A
M
S
E
I
H
Y
K
P
T
R
E
Y
E
D
R
V
I
V
Y
M
N
D
G
Y
E
V
S
A
T
------
I
R
Q
F
A
D
K
L
S
--
H
Y
P
A
I
A
A
A
L
------
D
-----------------------------------------------------------------------------
25
Fugue
80.90
37%
-106
- C3 -
1YR1
-
DIVIB_GEOKA
A:
[115-233]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
E
W
R
R
-------
I
A
Y
V
Y
D
R
Q
T
F
F
P
L
L
E
N
G
R
-----
L
L
K
Q
E
G
T
KT-
A
--
P
S
--
D
A
P
V
L
V
G
W
K
D
G
-
D
-
A
---
I
A
E
M
T
G
Q
L
A
E
L
P
A
A
-----
V
L
G
A
M
S
E
I
H
Y
K
P
T
R
E
Y
E
D
R
V
I
V
Y
M
N
D
G
Y
E
V
S
A
T
------
I
R
Q
F
A
D
K
L
S
--
H
Y
P
A
I
A
A
A
L
------
D
-----------
R
N
V
K
--------------------------------------------------------------
6
HHSearch
69.87
15%
-95
- C3 -
2VH1
-
FTSQ_ECOLI
A:
[58-249]
----------------------------------------------------------------------------------------------------------------------
S
K
L
V
L
T
G
E
-
R
-
H
----
Y
T
R
N
D
D
I
R
Q
S
I
L
A
-
L
G
E
P
G
-
T
F
M
T
Q
D
V
N
I
I
Q
T
---
Q
I
----
E
Q
R
L
-
P
W
I
-----------------
K
Q
V
S
V
R
K
Q
W
-----
P
---
D
--
E
--
L
K
I
H
L
V
E
Y
V
P
-------
I
A
R
W
N
D
---
Q
H
M
V
D
A
E
G
N
-----
T
F
S
V
P
P
E
---
R
TS
K
Q
--
V
L
P
M
L
Y
G
P
E
G
S
A
N
-
E
---
V
L
Q
G
Y
R
E
M
G
Q
M
L
A
K
-----
D
R
F
T
L
K
E
A
A
M
T
----
A
R
R
S
W
Q
L
T
L
N
N
D
I
K
L
N
L
G
------
R
G
D
T
M
K
R
L
A
--
R
F
V
E
L
Y
P
V
L
Q
Q
Q
A
Q
T
D
-----------
G
K
R
I
S
Y
V
D
L
R
Y
D
------------------------------------------------------
5
HHSearch
64.88
13%
-89
- C3 -
2VH2
-
?
A:
[57-246]
--------------------------------------------------------------------------------------------------------------------
P
L
S
K
L
V
V
T
G
E
-
R
H
Y
----
T
-
T
N
D
D
I
R
Q
A
-
I
L
S
L
G
A
P
G
-
T
F
M
T
Q
D
V
N
I
I
Q
Q
---
Q
I
----
E
-
R
L
-
P
W
I
-----------------
Q
Q
A
S
V
R
K
Q
W
-----
P
---
D
--
E
--
L
K
I
H
L
V
E
Y
V
P
-------
F
A
R
W
N
---
D
L
H
M
V
D
E
Q
G
R
-----
S
F
S
V
P
S
E
RV-
G
--
K
Q
--
K
L
P
L
L
Y
G
P
E
G
S
-
E
Q
D
---
V
L
E
G
Y
R
A
I
N
K
V
L
A
A
-----
N
K
Y
Q
L
K
M
V
A
M
S
----
A
R
H
S
W
Q
L
A
L
D
N
D
V
R
L
E
L
G
------
R
D
D
R
M
G
R
L
Q
--
R
F
I
E
L
Y
P
M
L
------
Q
QP---------
D
K
R
V
S
Y
V
D
L
R
Y
E
------------------------------------------------------
26
Fugue
64.50
11%
-76
- C3 -
2VH1
-
FTSQ_ECOLI
A:
[58-260]
----------------------------------------------------------------------------------------------------------------------
S
K
L
V
L
T
G
E
R
H
-
Y
----
T
-
R
N
D
D
I
R
Q
S
-
I
L
-
A
L
G
E
P
G
T
F
M
T
Q
D
V
N
I
I
Q
T
---
Q
I
----
E
-
Q
R
L
P
W
I
-----------------
K
Q
V
S
V
R
K
Q
W
-----
P
---
D
--
E
--
L
K
I
H
L
V
E
Y
V
P
-------
I
A
R
W
N
D
Q
H
M
V
D
A
---
E
G
N
-----
T
F
S
V
P
P
E
---
R
--
T
S
--
K
Q
V
L
P
M
L
Y
G
P
E
-
G
-
S
---
A
N
E
V
L
Q
G
Y
R
E
M
G
Q
M
-----
L
A
K
D
R
F
T
L
K
E
A
A
M
T
-
A
R
R
S
W
Q
L
T
L
N
N
D
I
K
L
N
L
G
------
R
G
D
T
M
K
R
L
A
--
R
F
V
E
L
Y
P
V
L
------
Q
-----------
Q
Q
A
Q
T
--
D
G
K
R
I
S
Y
V
-
D
L
R
Y
D
S
G
A
--
A
V
G
W
A
P
L
P
--------------------------------
30
Fugue
49.73
17%
-28
- C1 -
4OCV
6
?
A:
[24-378]
----T
N
E
A
L
F
D
V
A
S
H
FALEGTVD
S
I
E
P
Y
G
DGH
I
N
T
T
Y
L
V
T
T
D
G
P
R
Y
I
L
Q
R
M
N
T
G
I
FPD
T
V
N
L
M
R
N
V
E
L
V
------
T
S
T
L
K
A
Q
G
K
E
T
L
D
I
V
R
T
---
T
S
G
D
T
W
A
E
I
D
G
G
A
W
R
V
Y
K
F
I
E
H
T
M
S
Y
N
L
V
P
N
-
P
-
D
----
V
-
F
R
E
A
G
R
A
F
-
G
D
-
F
Q
N
F
L
S
G
F
D
A
N
Q
L
T
E
T
I
A
---
H
F
HD
T
P
H
-
R
F
-
E
D
F
-----------------
K
K
A
L
A
A
D
E
L
-----
G
---
R
--
A
--
A
G
C
G
P
E
I
E
F
Y
-------
L
S
H
A
D
Q
Y
A
V
V
M
D
G
L
R
D
G
S
-----
I
-
P
L
R
V
T
---
H
--
N
D
TK
L
N
N
I
L
M
D
A
T
T
G
-
K
-
A
---
R
A
I
I
--
D
L
D
T
I
M
P
G
S
M
L
F
D
F
G
D
S
I
R
F
G
A
S
T
A
L
E
D
E
R
D
L
D
K
V
H
F
S
T
E
L
F
R
A
Y
T
------
E
G
F
V
G
E
L
R
D
--
S
I
T
A
R
E
A
E
L
------
L
-----------
P
F
S
G
N
L
L
T
M
E
C
G
M
R
F
L
A
D
Y
L
E
G
D
V
YF
A
T
K
Y
P
E
H
N
L
V
R
S
R
T
Q
I
K
L
V
R
E
M
E
Q
R
A
D
E
T
R
A
I
V
A
D
V
M
E
T
T
9
HHSearch
49.04
14%
-112
- C3 -
5D0O
-
?
A:
[24-99]
-------------------------------------------------------------------------------------------------------------------
F
V
V
K
D
I
H
F
E
G
L
-
Q
-
R
----
V
-
A
V
G
A
A
L
L
S
-
M
P
-
V
R
T
G
D
-
T
V
N
D
E
D
I
S
N
T
I
R
---
A
L
----
F
-
A
T
-
G
N
F
-----------------
E
D
V
R
V
L
R
D
------
G
---
D
--
T
--
L
L
V
Q
V
K
E
R
P
T
-------
I
A
S
I
T
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
48.48
14%
-90
- C3 -
2QDF
-
BAMA_ECOLI
A:
[6-92]
-----------------------------------------------------------------------------------------------------------------
E
G
F
V
V
K
D
I
H
F
E
G
L
-
Q
-
R
----
V
-
A
V
G
A
A
L
L
S
-
M
P
-
V
R
T
G
D
-
T
V
N
D
E
D
I
S
N
T
I
R
---
A
L
----
F
-
A
T
-
G
N
F
-----------------
E
D
V
R
V
L
R
D
------
G
---
D
--
T
--
L
L
V
Q
V
K
E
R
P
T
-------
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
48.12
11%
-115
- C3 -
4K3B
-
?
A:
[21-99]
-----------------------------------------------------------------------------------------------------------------
A
D
F
T
I
Q
D
I
R
V
E
G
L
-
Q
-
R
----
T
-
E
P
S
T
V
F
N
Y
-
L
P
-
V
K
V
G
D
-
T
Y
N
D
T
H
G
S
A
I
I
K
---
S
L
----
Y
-
A
T
-
G
F
F
-----------------
D
D
V
R
V
E
T
A
------
D
---
G
--
Q
--
L
L
L
T
V
I
E
R
P
T
-------
I
G
S
L
N
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
44.88
15%
-36
- C2 -
5A5T
-
?
L:
[181-552]
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNV
L
H
S
L
V
---
D
K
S
N
I
N
R
Q
L
E
V
YTSGGD
P
E
S
V
A
G
E
Y
G
R
H
S
L
Y
K
M
L
GYF
S
L
V
G
L
L
R
L
H
S
L
L
G
D
Y
Y
Q
-
A
I
K
V
L
E
N
I
E
L
N
K
K
-
S
-
M
----
Y
-
S
R
V
P
E
C
Q
V
-
T
T
-
Y
Y
Y
V
G
F
A
Y
L
M
M
R
R
Y
Q
D
A
I
---
R
V
----
F
-
A
N
-
I
L
L
YIQRTKSMFQRTTYKYE
M
I
N
K
Q
N
E
Q
M
-----
H
---
A
--
L
--
L
A
I
A
L
T
M
Y
P
M
RIDESIH
L
Q
L
R
E
K
Y
G
D
K
M
L
R
M
Q
K
G
D
PQVYE
E
L
F
S
Y
S
C
---
P
--
K
F
--
L
S
P
V
V
P
N
Y
D
S
V
-
H
-
P
NYH
K
E
P
F
L
Q
Q
L
K
V
F
S
D
E
-----
V
Q
Q
Q
A
Q
L
S
T
I
R
S
F
L
K
L
Y
T
T
M
P
V
A
K
L
A
G
F
L
D
L
T
E
QEFRIQ
L
L
V
F
K
H
K
M
K
NL
V
W
T
S
G
I
S
A
L
------
D
GEFQSASEVDF
Y
I
D
K
D
M
I
H
I
A
D
T
K
V
A
-
R
R
Y
G
D
F
F
I
--
R
Q
I
H
K
F
E
E
--------------------------------
17
HHSearch
44.28
10%
-76
- C3 -
4C00
2
TAMA_ECOLI
A:
[169-248]
-----------------------------------------------------------------------------------------------------------------
E
R
Y
R
F
G
H
V
T
F
E
G
S
---
Q
----
I
-
R
D
E
Y
L
Q
N
L
-
V
P
-
F
K
E
G
D
-
E
Y
E
S
K
D
L
A
E
L
N
R
---
R
L
----
S
-
A
T
-
G
W
F
-----------------
N
S
V
V
V
A
P
Q
F
DKARE
T
---
K
--
V
L
P
L
T
G
V
V
S
P
R
T
E
-------
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
43.68
9%
-72
- C3 -
4BZA
1
TAMA_ECOLI
A:
[164-245]
--------------------------------------------------------------------------------------------------------------
N
S
G
E
R
Y
R
F
G
H
V
T
F
E
G
S
---
Q
----
I
-
R
D
E
Y
L
Q
N
L
-
V
P
-
F
K
E
G
D
-
E
Y
E
S
K
D
L
A
E
L
N
R
---
R
L
----
S
-
A
T
-
G
W
F
-----------------
N
S
V
V
V
A
P
Q
F
DKARE
T
---
K
V
L
P
--
L
T
G
V
V
S
P
R
T
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
38.37
14%
-42
- C3 -
4K3B
-
?
A:
[345-425]
-----------------------------------------------------------------------------------------------------------------
R
K
I
Y
V
N
E
I
H
I
T
G
N
-
N
-
K
----
T
-
R
D
E
V
V
R
R
E
-
L
R
-
Q
M
E
S
A
-
P
---
Y
D
T
S
K
L
Q
R
S
K
E
R
V
----
E
-
L
L
-
G
Y
F
-----------------
D
N
V
Q
F
D
A
V
P
LAGT-
P
---
D
K
V
D
--
L
N
M
S
L
T
E
R
S
T
-------
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
38.11
11%
-80
- C3 -
2X8X
-
?
X:
[69-145]
-----------------------------------------------------------------------------------------------------------------
P
K
V
L
I
A
E
V
V
V
E
G
A
-
T
-
P
----
E
-
L
E
Q
L
V
Y
Q
V
-
I
S
-
T
R
P
G
S
-
T
T
T
R
T
Q
L
Q
Q
D
T
N
---
A
I
----
F
-
A
T
-
G
F
F
-----------------
A
D
V
N
A
V
P
R
D
-----
T
PLG
V
--
R
--
I
T
F
V
V
R
P
Y
P
V
-------
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
36.56
10%
-48
- C3 -
3MC9
-
?
A:
[217-305]
---------------------------------------------------------------------------------------------------------------
T
E
P
R
V
L
V
S
E
V
L
V
R
P
Q
-
S
-
G
QLT
P
E
-
L
E
T
Q
V
Y
N
V
-
I
R
-
T
Q
P
G
R
-
T
T
T
R
S
Q
L
Q
E
D
I
N
---
A
I
----
F
-
G
T
-
G
F
F
-----------------
S
N
V
Q
A
S
P
E
D
T
PL--
G
---
V
--
R
--
V
S
F
I
V
Q
P
N
P
V
-------
L
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
36.21
11%
-24
* C3 *
5D0O
-
?
A:
[345-425]
-----------------------------------------------------------------------------------------------------------------
N
R
F
Y
V
R
K
I
R
F
E
G
N
-
D
-
T
----
S
-
K
D
A
V
L
R
R
E
-
M
R
-
Q
M
E
G
A
-
W
L
G
S
D
L
V
D
Q
G
K
E
---
R
L
----
N
-
R
L
-
G
F
F
-----------------
E
T
V
D
T
D
T
Q
R
VPGS-
P
---
D
Q
V
D
--
V
V
Y
K
V
K
E
R
N
T
-------
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
36.01
13%
-56
- C3 -
4K3C
-
?
A:
[341-422]
----------------------------------------------------------------------------------------------------------------
G
R
R
I
Y
V
R
K
I
R
F
E
G
N
-
D
-
V
----
T
-
A
D
S
T
L
R
R
E
-
M
R
-
Q
Q
E
G
A
-
W
L
S
T
S
A
V
S
L
A
K
S
---
R
L
----
E
-
R
T
-
G
F
Y
-----------------
E
T
V
E
M
S
M
P
T
VKNT-
D
---
D
Q
V
D
--
I
I
Y
K
I
K
E
R
N
T
-------
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
33.77
11%
-34
- C- -
3Q6B
-
BAMA_ECOLI
A:
[345-401]
-----------------------------------------------------------------------------------------------------------------
N
R
F
Y
V
R
K
I
R
F
E
G
N
-
D
-
T
----
S
-
K
D
A
V
L
R
R
E
-
M
R
-
Q
M
E
G
A
-
W
L
G
S
D
L
V
D
Q
G
K
E
---
R
L
----
N
-
R
L
-
G
F
F
-----------------
E
T
V
D
T
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------