@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu16590: (2016-06-26 )
MSKKVTDTVQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDDGVDIEECAKVSEALSEKLDEADPISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIDGVKVFEGELAEFDGQTVTVEITIKTRKKRINIPYEKIANARLAVTF
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50........60....--..--..70........80........90...---...--..100-----........110.----......120..--------..--...130.---.-.-----....140.....--..150....---------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSK
K
V
T
D
T
V
Q
E
M
A
Q
P
I
V
D
SL
Q
L
E
L
V
D
I
E
F
VKEGQ
S
W
F
L
R
V
F
I
DSDDGV
D
I
E
E
C
A
K
V
S
E
A
L
S
E
K
LD--EA--DPISQ
N
Y
F
L
E
VSSPGAERP
L
K
K
K
A
D
F
E
---
K
S
L--GK
N
V
------
Y
I
K
T
YEPID
G
V
K
----VFEG
E
L
A
EFDG--------
Q
T
--
V
T
V
E
I
T
I
---
K
-T-----RKKRINI
P
Y
E
K
I--AN
A
R
L
A
V
TF---------------------------------------------------------------------------------------------------------
27
HHSearch
88.74
41%
-142
- C5 -
1IB8
-
RIMP_STRPN
A:
[8-162]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
I
V
E
L
V
R
E
V
V
E
P
V
I
E
-
A
P
F
E
L
V
D
I
E
Y
G
K
I
G
S
D
M
I
L
S
I
F
V
D
K
P
E
G
I
T
L
N
D
T
A
D
L
T
E
M
I
S
P
V
L
D
--
T
I
KP
D
P
F
P
E
Q
Y
F
L
E
I
T
S
P
G
L
E
R
P
L
K
T
K
D
A
V
A
---
G
A
V
--
G
K
Y
I
------
H
V
G
L
Y
Q
A
I
D
K
Q
K
----
V
F
E
G
T
L
L
A
F
E
E
--------
D
E
--
L
T
M
E
Y
M
D
---
K
-
T
-----
R
K
K
T
V
Q
I
P
Y
S
L
V
--
S
K
A
R
L
A
V
K
L
---------------------------------------------------------------------------------------------------------
50
Fugue
88.56
40%
-138
- C5 -
1IB8
-
RIMP_STRPN
A:
[1-164]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSGVD
A
I
A
T
I
V
E
L
V
R
E
V
V
E
P
V
I
E
A
-
P
F
E
L
V
D
I
E
Y
G
K
I
G
S
D
M
I
L
S
I
F
V
D
K
P
E
G
I
T
L
N
D
T
A
D
L
T
E
M
I
S
P
V
L
D
T
I
K
P
--
D
P
F
P
E
Q
Y
F
L
E
I
T
S
P
G
L
E
R
P
L
K
T
K
D
A
V
A
---
G
A
V
--
G
K
Y
I
------
H
V
G
L
Y
Q
A
I
D
K
Q
K
----
V
F
E
G
T
L
L
A
F
E
E
--------
D
E
--
L
T
M
E
Y
M
D
---
K
-
T
-----
R
K
K
T
V
Q
I
P
Y
S
L
V
--
S
K
A
R
L
A
V
K
L
LE-------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
86.94
40%
-144
- C5 -
1IB8
-
RIMP_STRPN
A:
[10-160]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
E
L
V
R
E
V
V
E
P
V
I
E
A
-
P
F
E
L
V
D
I
E
Y
G
K
I
G
S
D
M
I
L
S
I
F
V
D
K
P
E
G
I
T
L
N
D
T
A
D
L
T
E
M
I
S
P
V
L
D
T
I
K
P
--
D
P
F
P
E
Q
Y
F
L
E
I
T
S
P
G
L
E
R
P
L
K
T
K
D
A
V
A
---
G
A
V
--
G
K
Y
I
------
H
V
G
L
Y
Q
A
I
D
K
Q
K
----
V
F
E
G
T
L
L
A
F
E
E
--------
D
E
--
L
T
M
E
Y
M
D
---
K
-
T
-----
R
K
K
T
V
Q
I
P
Y
S
L
V
--
S
K
A
R
L
A
V
-----------------------------------------------------------------------------------------------------------
28
HHSearch
50.83
14%
-162
- C- -
3HFO
-
?
A:
[5-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
G
L
P
S
V
R
Q
V
Q
---
L
L
I
K
D
Q
T
P
V
------
E
I
K
L
L
---
T
G
-
D
----
S
L
F
G
T
I
R
W
Q
D
T
--------
D
G
--
L
G
L
V
D
D
S
------------
E
R
S
T
I
V
R
L
A
A
I
--
A
Y
I
T
--------------------------------------------------------------------------------------------------------------
37
HHSearch
49.38
16%
-164
- C5 -
4NL2
2
?
D:
[18-66]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
--
K
I
L
A
------
T
V
F
L
T
---
N
G
-
F
----
Q
L
R
G
R
V
V
S
F
D
N
--------
F
T
--
V
L
L
D
V
E
G
-------------
K
Q
Q
L
V
F
K
H
A
I
--
S
T
F
S
P
-------------------------------------------------------------------------------------------------------------
30
HHSearch
48.77
23%
-163
- C5 -
1YCY
-
?
A:
[8-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
V
L
K
---
E
W
K
--
G
H
K
V
------
A
V
S
V
G
------------
F
T
G
T
L
E
D
F
D
E
--------
E
V
--
I
L
L
K
D
V
V
DVI
G
-
N
-----
R
G
K
Q
M
L
I
G
L
E
D
I
--
N
W
I
---------------------------------------------------------------------------------------------------------------
29
HHSearch
48.03
17%
-160
* C5 *
3HFN
-
?
A:
[8-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
P
S
I
R
Q
L
Q
---
N
L
I
K
Q
A
A
P
V
------
E
I
K
L
V
---
T
G
-
D
----
A
I
T
G
R
V
L
W
Q
D
P
--------
T
C
--
V
C
I
A
D
---------------
R
Q
T
T
I
W
K
Q
A
I
--
A
Y
L
Q
--------------------------------------------------------------------------------------------------------------
33
HHSearch
47.54
11%
-105
- C5 -
1Y96
-
GEMI6_HUMAN
A:
[6-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
G
P
L
E
W
Q
---
D
Y
I
--
Y
K
E
V
------
R
V
T
A
S
E
---
K
-
N
----
E
Y
K
G
W
V
L
T
T
D
P
--------
V
S
A
N
I
V
L
V
N
F
L
---
E
D
G
-----
S
M
S
V
T
G
I
M
G
H
A
V
--
Q
T
V
E
T
-------------------------------------------------------------------------------------------------------------
40
HHSearch
45.23
24%
-146
- C5 -
4EMK
-
LSM5_SCHPO
A:
[6-38]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
L
E
---
L
I
D
---
K
C
I
--
G
S
N
L
------
W
V
I
M
K
S
---
E
-
R
----
E
F
A
G
T
L
V
G
F
D
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------
53
Fugue
44.70
17%
-45
- C3 -
1DQA
6
HMDH_HUMAN
A:
[41-449]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS
D
A
E
I
I
Q
L
V
N
A
K
HIPAYK
L
E
T
L
I
ET
H
E
R
G
V
S
I
R
R
Q
L
L
S
K
K
LSEPSSLQYLPYRDYNYSLVMGACCENVI
G
Y
M
P
I
P
V
G
V
A
G
PLCLDEKEFQ
V
P
M
A
T
TEGC
L
V
A
S
T
N
R
G
C
R
A
I
G
L
G
G
G
A
S
S
R
V
L
A
D
G
M
T
R
G
P
V
V
R
L
PR
A
C
D
S
A
E
V
K
A
W
L
E
T
S
E
G
F
A
V
I
K
E
A
F
D
S
T
--
S
R
F
A
R
L
Q
K
L
H
T
S
I
A
G
R
N
L
Y
I
R
F
Q
S
R
S
G
D
A
M
G
M
N
M
I
S
K
G
T
E
K
A
L
S
K
L
H
--
E
Y
--
F
P
--
E
M
Q
I
L
A
V
S
G
N
Y
C
T
D
K
K
P
A
A
I
N
W
I
---
E
G
R
--
G
K
S
V
------
V
C
E
A
V
I
P
A
K
V
V
R
EVLK
T
T
T
E
A
M
I
E
V
N
I
--------
N
K
--
N
L
V
G
S
A
M
---
A
-
G
-----
S
I
G
G
Y
N
A
H
A
A
N
I
--
V
T
A
I
Y
I
A
C
G
QDAAQNVGSS
N
C
I
T
L
M
E
A
S
G
PTNE
D
L
Y
I
S
C
T
M
PSIEIGTVGGGTNL
L
P
Q
Q
A
C
L
Q
M
L
GVQGACKDNPG
E
N
A
R
Q
L
A
R
I
V
C
G
T
V
M
A
G
E
L
S
L
M
A
A
L
A
A
GH
L
V
K
S
H
M
I
HN
38
HHSearch
44.39
32%
-129
- C5 -
1MGQ
-
RUXX_METTH
A:
[16-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
L
G
---
N
S
L
--
N
S
P
V
------
I
I
K
L
K
G
---
D
-
R
----
E
F
R
G
V
L
K
S
F
D
L
--------
H
-----------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
41.71
24%
-113
- C5 -
4C92
-
LSM7_YEAST
G:
[26-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
L
D
L
A
---
K
Y
K
--
D
S
K
I
------
R
V
K
L
M
G
---
G
-
K
----
L
V
I
G
V
L
K
G
Y
D
Q
--------
L
-----------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
41.46
17%
-64
* C3 *
4KTW
2
?
A:
[1-160]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
I
L
A
I
N
F
S
------
T
A
S
K
K
G
E
G
T
G
Y
A
F
R
K
D
G
Q
V
Y
V
G
S
I
K
A
Y
N
P
K
K
T
A
W
E
R
T
F
D
I
V
N
A
I
K
D
I
I
D
--
E
F
--
D
L
--
K
G
Y
H
L
A
I
E
T
P
I
M
G
R
N
R
K
H
S
I
T
L
A
---
N
C
N
--
G
Y
F
I
------
G
A
I
D
G
L
V
N
G
Y
T
F
----
I
D
N
S
K
W
C
S
Y
H
L
ISGK
R
E
Q
R
K
E
--
E
S
L
E
L
L
K
---
A
-
T
-----
G
L
V
D
S
N
C
K
D
D
N
I
--
A
D
A
Y
N
I
L
T
Y
C
E
H
L-----------------------------------------------------------------------------------------------------
52
Fugue
41.30
23%
-31
* C4 *
3WAJ
2
?
A:
[15-868]
SV
L
V
I
A
A
L
I
S
V
K
L
R
ILNP
W
N
S
V
F
TWTVRLGGN
D
P
W
Y
Y
Y
R
L
I
E
N
T
I
H
N
FPHRIWFDPFTYYP
Y
G
S
Y
T
HFG
P
F
L
V
Y
L
G
S
I
A
G
I
I
F
SATSG
E
S
L
R
A
V
L
A
F
I
P
A
I
G
G
V
L
A
I
L
P
V
Y
L
L
T
R
E
V
FD
K
R
A
A
V
I
A
A
F
L
I
A
I
VPG
Q
F
L
Q
R
S
ILGFNDH
H
I
W
E
A
F
W
Q
V
S
A
L
G
T
F
L
L
A
Y
N
RWKGHDLT
A
R
Q
M
A
Y
P
V
I
A
G
I
T
I
G
L
Y
V
L
S
WGAGF
I
I
A
P
I
I
L
A
F
M
F
F
A
F
V
L
AGFVNAD
R
K
N
L
S
L
V
A
V
V
T
F
A
V
S
A
L
I
Y
LPFAFNYPGFSTIFYSP
F
Q
L
L
V
L
L
G
S
A
V
I
A
A
A
F
Y
Q
I
E
K
W
N
D
V
G
F
F
E
R
V
GLGRK
G
M
P
L
A
V
I
V
L
T
A
L
I
M
G
L
F
F
VLT
N
A
V
L
H
FGA
L
F
F
F
G
M
A
G
I
L
Y
S
A
Y
R
F
L
KRRS
F
P
E
M
A
L
L
I
W
A
I
A
M
F
I
A
L
WGQNRFAYYF
A
A
V
S
A
V
Y
S
A
L
A
L
S
V
V
F
D
K
L
HFRVA
F
A
L
L
I
A
L
A
A
IY
P
T
Y
I
L
A
D
A
Q
S
S
Y
AGGPN
K
Q
W
Y
D
A
L
T
W
M
R
E
N
TPD
G
E
K
Y
D
E
Y
Y
L
QLYPTPQSNKEPFSYPFE
T
Y
G
V
I
S
W
WDY
G
H
W
I
E
A
V
AHRMPIANPFQAGIGNKYNNVPG
A
S
S
F
F
T
AEN
E
S
Y
A
E
F
V
A
E
K
L
NVK
Y
V
V
S
D
IEMETGK
Y
Y
A
M
A
V
W
A
E
GD
L
P
L
A
E
KY
Y
G
G
Y
F
Y
Y
S
PTG
T
F
G
Y
A
NSQWDIPLNSIIIP
L
R
I
P
S
E
L
Y
Y
S
T
M
E
A
K
L
H
L
F
D
G
S
---
G
L
S
H
Y
R
M
I
Y
E
--
S
D
Y
P
A
E
W
K
S
Y
S
S
Q
V
N
L
N
---
N
E
S
Q
V
L
Q
T
A
L
Y
--
E
A
--
V
M
R
A
R
--
Y
G
V
S
P
T
M
G
T
Q
E
V
L
Y
K
Y
A
Y
T
Q
LYE
K
K
M
--
G
I
P
V
K
IAPSG
Y
V
K
I
F
E
R
V
K
G
A
V
----
V
T
-
G
K
V
S
A
-
N
V
--------
T
E
--
V
S
V
N
A
T
I
---
K
-
T
-----
N
Q
N
R
T
F
E
Y
W
Q
T
V
E
V
K
N
G
T
Y
T
V
V
L
PYSHNSDYPVKPIT
P
Y
H
I
K
A
GN
V
V
K
E
I
T
I
Y
E
S
Q
V
Q
N
G
E
I
I
Q
L
D
L-------------------------------------------------------------
42
HHSearch
40.95
29%
-102
- C5 -
1H64
-
RUXX_PYRAB
1:
[7-37]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
I
H
---
R
S
L
--
D
K
D
V
------
L
V
I
L
K
K
---
G
-
F
----
E
F
R
G
R
L
I
G
Y
D
I
--------
H
-----------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
39.39
20%
-113
- C5 -
2E70
-
SPT5H_HUMAN
A:
[704-752]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
I
--
G
Q
T
V
------
R
I
S
Q
G
-
P
Y
---
K
----
G
Y
I
G
V
V
K
D
A
T
E
--------
S
T
--
A
R
V
E
L
H
S
-----------
T
C
Q
T
I
S
V
D
R
Q
R
L
--
T
T
----------------------------------------------------------------------------------------------------------------
43
HHSearch
38.77
26%
-110
- C5 -
4F7U
-
RUXG_HUMAN
G:
[7-37]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
L
K
---
K
F
M
--
D
K
K
L
------
S
L
K
L
N
G
---
G
-
R
----
H
V
Q
G
I
L
R
G
F
D
P
--------
F
-----------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
38.72
23%
-117
- C5 -
4XQ3
-
?
A:
[10-40]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
L
R
---
T
A
I
--
N
R
I
V
------
L
V
K
L
K
D
---
G
-
S
----
E
Y
I
G
K
L
E
Q
T
D
G
--------
T
-----------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
38.27
32%
-95
- C5 -
4C92
-
LSM5_YEAST
E:
[4-39]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
I
L
P
L
---
E
V
I
D
---
K
T
I
--
N
Q
K
V
------
L
I
V
L
Q
S
---
N
-
R
----
E
F
E
G
T
L
V
G
F
D
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
37.31
16%
-79
- C5 -
3FB9
-
?
A:
[16-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
I
K
---
A
H
E
--
G
Q
V
V
------
E
M
T
L
E
N
G
R
K
R
Q
K
----
N
R
L
G
K
L
I
E
V
Y
P
--------
S
L
--
F
I
V
E
F
G
D
---
V
-
E
GDKQV
N
V
Y
V
E
S
F
T
Y
S
D
I
--
L
T
E
K
N
L
------------------------------------------------------------------------------------------------------------