@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu16799: (2016-06-26 )
MILYTVMPQEIVFAEQNQETSAHEQIEYKGVPLLVEMKGNEAEVIQIMSTNPMHFLHPDISPGQKLKLNV
Atome Classification :
(20 SA)
--------------------------------------------------------.........10........20........-30---...--......-40...-----------.....---------------------50.----.-..---..--..60..---......70-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------
M
I
L
Y
T
VMPQ
E
I
V
F
AEQNQETSAH
E
Q
I
EYK-G----
V
P
L
--
L
V
E
MKG-NE
A
E
V
-----------
I
Q
I
MS---------------------TNP----
M
-
H
F
---LH--PDISPG---
Q
K
L
K
LNV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
61.81
20%
-88
- C4 -
2Y9W
1
?
C:
[9-150]
LDLPGTRILNGANWANNSATSGTLIIFDQSTPGQDADRWLIHNYLDGYKIFNMGSN
N
W
A
S
V
S
R
G
N
T
V
L
G
V
S
E
F
D
G
Q
T
C
K
W
S
I
E
Y
S
-
G
NGEE
F
W
I
--
R
V
P
R
E
G
-
G
G
G
A
V
-----------
W
T
I
K
P
---------------------
A
S
S
QGPT
T
-
V
F
---
L
D
LL
K
E
T
D
P
N
---
Q
R
I
K
F
A
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
52.31
25%
-4
- C9 -
5AYC
3
?
A:
[1-386]
----------------------------------------------------MIH
E
K
Y
T
E
M
R
N
E
Q
E
A
L
L
S
R
K
N
T
K
T
S
F
-----
Y
N
-
G
----
I
Y
D
--
R
Y
E
H
P
V
-
L
T
R
E
H
-----------
I
---------------------------
P
----
L
-
H
W
RYD
L
N
--
K
E
T
N
P
F
---
F
Q
E
R
L
G
I
NAVFN
A
G
A
I
K
L
NDRYCLVARVEGNDR
K
S
F
F
A
V
A
E
S
DKGTEG
F
R
F
R
QYPVCLPALTDDETNVYD
M
R
L
T
QHEDG
W
I
Y
G
V
F
C
V
E
K
S
AGTADLS
E
A
V
A
S
A
G
I
A
R
T
KDLT
N
W
E
R
L
P
DLVTLRSPQQRN
V
T
L
L
PEFVDG
K
Y
A
F
Y
T
R
P
M
DGFIETGSGG
G
I
G
F
G
L
A
DDITH
A
V
I
D
E
E
R
M
T
S
I
R
R
Y
HTITES
K
N
G
A
G
A
T
P
I
K
T
ERGWLNI
A
H
G
V
R
N
T
AA
G
L
R
Y
V
I
Y
C
F
V
T
D
LSEPWKVIAEPGGYLIAPF
K
D
E
R
V
GDVSN
V
V
F
T
N
G
A
I
V
D
DNG
D
V
Y
I
Y
Y
A
S
SD
T
R
L
H
V
A
V
S
S
I
D
K
L
L
D
Y
A
F
N
TPADALR
T
A
E
C
V
K
Q
R
C
D
L
I
K
R
N
I
E
L
L
32
Fugue
51.54
16%
-88
- C8 -
1CCZ
2
LFA3_HUMAN
A:
[1-93]
------------------------------------------------------F
S
Q
Q
I
Y
G
V
V
Y
G
N
V
T
F
--
H
V
P
S
N
V
P
L
K
E
V
L
W
K
K
Q
----
K
D
K
--
V
A
E
L
E
N
-
S
E
F
R
A
-----------
F
S
S
F
K
NRVYLDTVSG
S
L
T
I
Y
NLTSSD
E
D
E
----
Y
-
E
M
---
E
S
--
P
N
I
T
D
T
---
M
K
F
F
L
Y
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
50.00
25%
-184
- C10 -
5FLM
-
RPAB1_BOVIN
E:
[156-193]
-------------------------------------------------------------------------------------------
V
T
E
--
L
L
A
R
Y
K
L
R
E
N
Q
L
-----------
P
R
I
Q
A
---------------------
G
D
P
----
V
A
R
Y
---
F
G
----
I
K
R
G
---
Q
V
V
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
48.16
18%
-71
- C7 -
1EHX
-
?
A:
[1-94]
--------------------------------------------------------
M
Q
D
P
T
I
N
P
T
S
I
S
A
-
K
A
G
S
F
A
D
T
K
I
T
L
T
P
N
-
G
----
N
T
F
N
G
I
S
E
L
Q
S
-
S
Q
Y
T
K
G
TN
E
V
T
L
L
A
S
Y
L
N
T
L
P
---------------------
E
N
T
----
T
-
K
T
---
L
T
--
F
D
F
G
V
G
TKN
P
K
L
T
I
T
V
L
PKDIPGLE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
44.62
23%
-15
* C9 *
1Y47
1
?
A:
[1-46]
-------------------------------------------------------------
D
Y
L
R
E
L
Y
K
L
E
Q
Q
A
M
K
L
Y
R
E
A
S
E
R
V
-
G
----
D
P
V
--
L
A
K
I
L
E
-
D
E
E
K
H
-----------
I
E
W
L
E
---------------------
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
41.83
19%
-178
- C10 -
4QIW
-
RPOH_THEKO
H:
[30-63]
-------------------------------------------------------------------------------------------------
L
K
K
Y
R
I
R
I
S
Q
L
-----------
P
Q
I
K
A
---------------------
S
D
P
----
A
V
V
A
---
L
G
----
A
K
P
G
---
D
V
I
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
41.80
18%
-130
* C10 *
1DZF
-
RPAB1_YEAST
A:
[159-198]
------------------------------------------------------------------------------------
D
-
E
----
K
R
E
--
L
L
K
R
Y
R
L
K
E
S
Q
L
-----------
P
R
I
Q
R
---------------------
A
D
P
V
---
A
-
L
Y
---
L
G
----
L
K
R
G
---
E
V
V
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
41.68
27%
-161
- C9 -
1PVE
-
A:
[30-56]
--------------------------------------------------------------------------------------------
P
A
--
L
L
Q
Q
I
G
R
E
N
P
Q
L
-----------
L
Q
Q
I
S
---------------------
Q
H
Q
----
E
-
H
F
---
I
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
41.22
17%
-132
- C10 -
3H0G
-
RPAB1_SCHPO
E:
[151-193]
---------------------------------------------------------------------------------
L
S
P
D
-
E
----
K
K
E
--
L
L
D
R
Y
K
L
R
E
T
Q
L
-----------
P
R
I
Q
L
---------------------
A
D
P
V
---
A
-
R
Y
---
L
G
----
L
K
R
G
---
E
V
V
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
41.15
15%
-179
- C10 -
4AYB
-
?
H:
[31-65]
------------------------------------------------------------------------------------------------
I
L
K
E
L
G
I
R
P
E
Q
L
-----------
P
W
I
R
A
---------------------
S
D
P
----
V
A
R
S
---
I
N
----
A
K
P
G
---
D
I
I
R
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
37.55
24%
-210
- C9 -
2F4M
-
B:
[29-54]
---------------------------------------------------------------------------------------------
A
--
L
L
Q
Q
I
G
R
E
N
P
Q
L
-----------
L
Q
Q
I
S
---------------------
Q
H
Q
----
E
-
H
F
---
I
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
32.27
40%
73
- C2 -
3KTP
-
B:
[8-17]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
F
H
P
G
---
V
P
W
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
31.00
12%
-77
- C9 -
4RS8
-
?
A:
[9-92]
------------------------------------------YIFLT
P
R
A
Y
I
I
V
H
L
L
K
V
G
K
A
K
A
S
E
I
S
E
N
T
Q
I
P
Y
Q
T
V
I
Q
N
I
R
W
L
-
L
----
A
E
G
--
Y
V
V
K
E
Q
-
K
G
E
E
I
-----------
Y
Y
K
L
T
---------------------
D
K
G
----
K
-
Q
M
---
A
T
--
A
E
L
E
K
I
---
R
K
L
V
E
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
30.21
14%
-280
* C11 *
4LX2
-
B:
[10-21]
-----------------------------------------------------------------------------------------------------------
K
-----------
K
R
L
L
S
---------------------
F
R
D
----
V
-
D
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
29.47
50%
56
- C9 -
1LQA
1
TAS_ECOLI
A:
[21-38]
------------------------------------------------------------------
M
T
F
G
E
Q
N
S
E
A
D
A
H
A
Q
L
D
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
29.36
20%
-75
- C5 -
1WO6
1
A:
[1-25]
--------------------------------------------------------
A
V
Y
Y
C
I
L
P
K
----
C
A
A
A
A
N
V
A
A
H
T
T
H
C
F
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
29.36
19%
-280
- C11 -
4KP3
-
MELPH_MOUSE
E:
[19-31]
----------------------------------------------------------------------------------------------------------
K
K
-----------
K
R
L
L
S
---------------------
F
R
D
----
V
-
D
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
26.40
16%
-48
- C10 -
1EIK
-
RPOH_METTH
A:
[27-59]
--------------------------------------------------------------------------------------------------
K
E
L
D
A
H
P
E
Q
L
-----------
P
K
I
K
T
---------------------
T
D
P
----
V
A
K
A
---
I
G
----
A
K
R
G
---
D
I
V
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
24.36
27%
-137
- C9 -
4U6U
-
?
A:
[21-35]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
P
----
Q
-
A
F
---
V
D
--
I
L
L
S
S
F
---
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------