@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu18140: (2016-06-29 )
MDEILKQYMVLYKKMSNMINGPDYPGKEKDIQHQKDQIEVYEKQLQQGFSTDYDYDVFADSVIKCAYGDMTLEDLEAVYYGLTTPFF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------.........10........20........30.....---...40........50........60........70........80......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------
M
D
E
I
L
K
Q
Y
M
V
L
Y
K
K
M
S
N
MINGPDYPGKEK
D
I
Q
H
Q
K
D
---
Q
I
E
V
Y
E
K
Q
L
Q
QGFSTDYD
Y
D
V
F
A
D
S
V
I
K
C
AYGDM
T
L
E
D
L
E
A
V
Y
YGLTTPFF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.21
35%
-
- C3 -
3JCR
-
?
B:
[682-736]
---------------------------------------------------------------------------------------------------------------------------
K
N
K
I
T
M
I
A
E
P
L
E
K
G
L
A
E
D
I
E
N
E
V
V
---
Q
I
T
W
N
R
K
K
L
G
E
F
F
Q
T
K
Y
D
W
D
L
L
A
A
R
S
I
-
W
A
F
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
77
Fugue
56.70
28%
55
- C3 -
4V2X
10
?
A:
[54-587]
KTLD
I
Q
S
Y
V
R
D
M
Q
P
G
W
N
LGNTFDAVGQDETAWGNPRVT
R
E
L
I
E
Q
I
A
D
E
GYK
S
I
R
I
P
V
T
WENRIGGAPDYPID
P
Q
F
L
N
R
V
D
Q
V
V
Q
W
A
L
E
E
D
L
Y
V
M
I
N
LHHDSWLWIYEMEHN
Y
N
G
V
M
V
K
Y
R
S
L
W
E
Q
L
S
N
H
F
K
--
D
Y
P
T
K
--------------
L
M
F
E
S
V
N
E
P
K
F
S
Q
N
W
G
E
---------------
I
R
E
N
H
H
A
L
L
D
D
L
N
T
V
F
F
E
I
V
R
Q
SGGQNDIR
P
L
V
L
P
T
METATS
Q
P
L
L
N
N
L
Y
Q
T
I
D
K
L
DDP
N
L
I
A
T
V
H
Y
YGF
W
P
F
S
V
NIAGYTRFE
E
N
S
K
Q
E
I
I
E
A
F
D
R
V
H
H
T
FVARG
I
P
V
V
LGEFGLLGFDKHTGVIQ
Q
G
E
K
L
K
F
F
E
F
L
I
H
H
L
N
E
R
D
I
T
H
M
L
WDNGQHFNRHTYEWYD
Q
E
L
F
D
M
M
R
A
S
W
E
G
R
S
S
V
A
ESN
F
I
Y
L
K
QGDRI
A
D
A
T
V
S
L
QLHGNELT
G
L
R
A
NG
Q
R
L
T
P
GQD
Y
E
L
N
GE
R
L
T
V
K
A
H
V
L
S
A
I
ASSGTLGTN
G
M
V
T
A
E
F
NR
G
A
D
W
H
F
R
V
N
T
Y
R
T
P
V
L
Q
S
T
Q
G
H
VS
N
F
S
I
PASFNGNSLA
T
M
E
A
V
Y
VDGGNAGPQDWTSFKEFGYAFSPSYDAN
E
M
K
L
T
E
A
F
F
R
E
VRD
G
E
V
R
L
T
F
H
F
WSG
E
T
V
N
Y
T
I
I
K
N
GN
Q
V
T
G
I
A
A
Q
68
PsiBlast_CBE
47.94
48%
44
- C4 -
2W3A
2
DYR_HUMAN
A:
[161-185]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
67
PsiBlast_CBE
46.92
48%
30
- C4 -
2W3A
1
DYR_HUMAN
B:
[161-185]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
IKY
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
PsiBlast_CBE
46.66
48%
13
- C4 -
3NTZ
2
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
PsiBlast_CBE
46.58
48%
43
- C4 -
3OAF
1
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
46.45
48%
48
- C4 -
1PD9
-
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
46.35
48%
31
- C4 -
1S3U
-
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
PsiBlast_CBE
46.34
48%
41
- C4 -
3F8Y
1
DYR_HUMAN
A:
[161-185]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
57
PsiBlast_CBE
46.20
48%
12
- C4 -
3GHC
1
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
PsiBlast_CBE
46.20
48%
23
- C4 -
3GHV
3
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
PsiBlast_CBE
45.86
48%
38
- C4 -
3NXR
3
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
45.74
48%
49
- C4 -
1PD8
-
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
45.73
48%
50
- C4 -
4KBN
2
DYR_HUMAN
B:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
IKY
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
PsiBlast_CBE
45.72
48%
58
- C4 -
3L3R
1
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.67
34%
-24
- C3 -
2CFF
-
HIS4_THEMA
A:
[13-52]
----------------------------------------------------------------------------------------------------------------------------
K
V
A
R
M
I
K
G
R
----
K
E
N
T
I
F
Y
E
K
D
---
P
V
E
L
V
E
K
L
I
E
E
G
F
T
L
I
H
V
V
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
PsiBlast_CBE
45.55
48%
46
- C4 -
3NXO
1
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
PsiBlast_CBE
45.40
48%
49
- C4 -
3NXY
2
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
70
PsiBlast_CBE
45.21
48%
44
- C4 -
2C2T
1
DYR_HUMAN
B:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
IKY
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
PsiBlast_CBE
45.17
48%
59
* C4 *
3S3V
1
DYR_HUMAN
A:
[160-184]
------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
P
G
V
L
S
D
V
Q
E
E
K
G
I
K
Y
K
F
E
V
Y
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------