@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu19050: (2016-06-30 )
MLMDSLQEIICEKRTYTRLYHSHKHAYSQFLFPLEGSIDLETEGRQVKLNPDHFLYIPPQCEHRFRSIGRNECLVLDVPLHAMKIDEYRAGSGIEAALDPFWSSIRYLLTEEAKAGTANSLHMLVQYIKEKLQSHSYASIAYIHSHLFERLTIKKLAEIEHYHPAYYSSWFKKQTGKSPQNYIADLRLEEAKRMLMERNETLTVVSEALGFQNLSSFTRWFTKSTGMPPRLYRNTLYSDKK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------.........10.-.......20........30........40--........50........60........70....-....80.-----.......90..----------......100.......110.......120.....------..130..---------.....140.......-150.......160.......170.......180.......190.....--..200.......--210.......220.......230.......240-----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------M
L
M
D
S
L
Q
E
I
I
CE-K
R
T
Y
T
R
L
Y
H
S
H
K
H
A
Y
S
Q
FLFPLEG
S
I
D
L
E--TEG
R
Q
V
KLNPD
H
F
L
YIPPQ
C
E
H
R
F
R
SIGRN
E
C
L
V
-
L
DVPL
H
A
-----
M
K
I
D
EYRAGSG----------
I
E
A
A
L
D
P
F
W
S
S
I
R
Y
L
L
T
E
EAKAGT
A
N
S
L
H
M
L
V
Q
Y
------
I
K
E
K
L
QS---------HS
Y
A
S
I
A
Y
I
H
S
H
L
F
E
-
R
L
T
I
K
K
L
A
E
I
EHY
H
P
A
Y
Y
S
S
W
F
K
K
QTGK
S
P
Q
N
Y
I
A
D
L
R
L
E
E
A
K
R
M
L
M
E--RN
E
T
L
T
V
V
S
E
A
L--G
F
Q
N
L
S
S
F
T
R
W
F
T
KSTGMP
P
R
L
Y
R
N
T
LYSDKK------
2
PsiBlast_PDB
78.72
31%
0
- C- -
1XS9
-
A:
[20--77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
W
I
E
D
N
L
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
A
Q
K
L
K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
--
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
------------
32
HHSearch
71.26
28%
-95
- C3 -
3OOU
1
?
A:
[7-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
N
V
L
S
Y
I
T
E
H
F
S
E
-
G
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
L
Q
--
T
K
D
N
L
T
I
I
A
G
K
S
--
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
-----------
22
Fugue
71.17
27%
-56
- C3 -
1BL0
2
MARA_ECOLI
A:
[9-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
---------
T
I
H
S
I
L
D
W
I
E
D
N
L
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
A
Q
K
L
K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
--
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
S
RFLHPL
26
Fugue
69.78
14%
-5
- C3 -
4FE7
1
XYLR_ECOLI
A:
[21-409]
MFT
K
R
H
R
I
T
L
L
F
N
ANK
A
Y
D
R
Q
V
V
E
G
V
G
E
Y
L
Q
A
S
QSEWDIFIEEFRWLGD
G
V
I
A
DFDD
K
Q
I
E
Q
A
L
ADVD
V
P
I
V
G
V
G
G
S
Y
HLAESYPP
V
H
Y
I
A
T
D
N
Y
A
L
V
E
S
A
F
L
H
L
K
E
K
GVN
R
F
A
F
Y
G
L
P
ESSGK
R
W
A
T
E
R
E
Y
A
F
R
Q
L
V
A
E
E
K
Y
R
G
V
V
Y
Q
G
L
E
T
A
P
E
N
W
Q
H
A
Q
N
R
L
A
D
W
L
Q
T
L
P
P
Q
T
G
I
I
--
A
------
V
T
D
A
R
A
R
H
I
L
Q
V
C
E
H
L
H
I
P
V
P
E
K
L
C
V
I
G
I
D
N
E
E
L
T
-----
R
Y
L
S
R
V
A
L
S
S
V
----------
A
Q
G
A
R
Q
M
G
Y
Q
A
A
K
L
L
H
R
L
L
D
K
E
E
M
P
L
Q
R
I
L
V
P
P
V
------
R
V
I
E
R
R
S
TDYRSLTD
P
A
V
I
Q
A
M
H
Y
I
R
N
H
A
C
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
--
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
---------
33
HHSearch
69.54
29%
-68
- C3 -
1BL0
2
MARA_ECOLI
A:
[13-116]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
H
S
I
L
D
W
I
E
D
N
L
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
A
Q
K
L
K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
--
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
--------
3
PsiBlast_PDB
68.57
31%
-71
- C3 -
1BL0
2
MARA_ECOLI
A:
[17-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
W
I
E
D
N
L
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
A
Q
K
L
K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
--
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
------------
1
PsiBlast_PDB
68.56
29%
-89
- C3 -
3OOU
-
?
A:
[11-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Y
I
T
E
H
F
S
E
-
G
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
L
Q
--
T
K
D
N
L
T
I
I
A
G
K
S
--
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
--------------
40
HHSearch
66.56
24%
-92
- C3 -
1D5Y
2
ROB_ECOLI
A:
[5-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
D
L
L
I
W
L
E
G
H
L
D
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
--
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
E
----------
35
HHSearch
65.55
24%
-52
- C3 -
3MN2
2
?
A:
[4-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
Q
V
E
E
Y
I
E
A
N
W
M
R
-
P
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
N
L
L
S
D
GA
T
P
T
T
V
T
A
A
A
L
S
C
--
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
----------
14
PsiBlast_PDB
65.20
28%
-60
- C3 -
3MN2
2
?
A:
[10-99]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
E
A
N
W
M
R
-
P
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
N
L
L
S
D
--
G
A
T
P
T
T
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
------------------
37
HHSearch
64.85
22%
-109
- C3 -
3W6V
2
?
A:
[40-141]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
V
V
A
W
A
L
E
H
L
H
E
-
Q
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
A
Q
R
L
L
E
T
--
S
D
Y
S
V
D
E
V
A
G
R
C
--
G
F
R
S
P
V
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
R
----------
11
PsiBlast_PDB
64.85
25%
-89
- C3 -
1D5Y
2
ROB_ECOLI
A:
[9-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
W
L
E
G
H
L
D
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
--
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
------------
31
HHSearch
63.36
19%
-135
- C3 -
4FE7
-
XYLR_ECOLI
A:
[307-409]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
Q
A
M
H
Y
I
R
N
H
A
C
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
--
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
---------
34
HHSearch
62.75
19%
-111
- C3 -
3OIO
2
?
A:
[9-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
A
V
S
L
M
E
A
N
I
E
E
-
P
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
Q
Q
--
T
S
K
S
I
V
Q
I
G
L
A
C
--
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
Q
---------
10
PsiBlast_PDB
62.01
29%
-97
- C3 -
3LSG
1
?
A:
[19-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
L
L
L
L
T
--
T
E
L
K
N
Y
E
I
A
E
Q
V
--
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
--------------
27
Fugue
61.69
11%
7
- C3 -
3GBG
1
TCPN_VIBC3
A:
[4-273]
-------------------------------------------------------------------------------------------------------------------------------------------
K
K
S
F
Q
T
N
V
Y
R
M
S
K
F
D
T
Y
I
F
N
N
L
Y
I
N
D
Y
K
M
F
W
I
D
S
G
I
A
K
L
I
D
K
N
C
L
V
S
Y
E
I
N
S
S
S
I
I
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
L
S
D
E
N
I
-
N
V
S
V
I
T
I
S
D
S
F
I
R
S
L
K
S
Y
I
L
G
N
K
D
L
L
L
W
NCEH
N
D
I
A
V
L
S
E
V
V
N
G
F
R
E
I
N
Y
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
E
K
K
Y
NSI
F
I
T
D
D
L
D
---------
A
M
E
K
I
S
C
L
V
K
S
D
I
T
R
-
N
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
S
-
R
G
V
K
F
R
E
L
I
N
S
I
R
I
S
Y
S
I
S
L
M
K
T
--
G
E
F
K
I
K
Q
I
A
Y
Q
S
--
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
G
V
--------
6
PsiBlast_PDB
61.42
21%
-139
- C3 -
4FE7
-
XYLR_ECOLI
A:
[313-406]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
R
N
H
A
C
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
--
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
------------
38
HHSearch
59.10
16%
-160
- C- -
3MKL
-
?
A:
[144-243]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
T
R
V
C
T
V
I
N
N
N
I
A
H
-
E
W
T
L
A
R
I
A
S
E
L
L
M
S
P
S
L
L
K
K
K
L
R
E
E
-
E
T
S
Y
S
Q
L
L
T
E
C
R
M
Q
R
A
L
Q
L
I
V
I
--
H
G
F
S
I
K
R
V
A
V
S
C
--
G
Y
H
S
V
S
Y
F
I
Y
V
F
R
N
Y
Y
G
M
T
P
T
E
Y
Q
E
R
S
-----------
7
PsiBlast_PDB
58.93
21%
-133
- C3 -
4FE4
-
XYLR_ECOLI
A:
[293-386]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
R
N
H
A
C
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
--
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
------------
36
HHSearch
58.92
28%
58
- C3 -
2K9S
-
A:
[5-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
E
A
C
Q
Y
I
S
D
H
L
A
D
S
N
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
K
L
L
L
S
T
--
T
R
M
P
I
A
T
V
G
R
N
V
--
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
-----------