@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu19430: (2016-07-01 )
MKAMRYEQISENAFKGKIQVYLEQILGDASLILKTLHEKDQCLLCELDDLGHVFQDMQGIASSFYLQSYIEEFTPAFIELAKAIKALSEHKHGALIVIERADPVERFIQKGTSLHAEISSSLIESIFFPGNPLHDGALLVRENKLVSAANVLPLTTKEVDIHLGTRHRAALGMSGYTDALVLVVSEETGKMSFAKDGVLYPLISPRT
Atome Classification :
(20 SA)
-----.........10........20........30..-......40........50......-..60----.........70.......--.80........90.....-...--100.-.......--110.......120.......130.......140--.--...---...150-....-...-.160.......170.......180-----.......190.......200.....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----MKA
M
R
Y
E
Q
ISENAF
K
G
K
I
Q
V
Y
L
E
Q
I
LG
D
A
S
L
I
L
-
K
T
L
HEKD
Q
C
L
L
C
E
L
D
D
L
G
H
V
F
Q
D
M
-
Q
G
I
-----
A
S
S
F
Y
L
Q
S
Y
I
E
E
F
T
P
A
F
I
--
E
L
A
K
A
I
K
A
L
S
EHKH
G
A
L
I
-
V
I
E--R-A
D
-
P
V
E
R
F
I
Q
--KGT
S
L
H
A
E
I
S
S
S
L
I
E
S
IFFPGNPLHD
G
A
L
L
V
RE--N--
K
L
V
---SAA
N
V
--
L
PLT-
T
K
E
-
V
D
I
H
LGT
R
H
R
A
ALGMSGY
T
D
A
L
V
L
-----
V
V
SEETGKMSFAKD
G
V
L
Y
PLISPRT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
88.17
46%
-120
* C9 *
2FB5
-
?
A:
[3-203]
-------
N
A
M
H
E
W
G
L
S
E
E
L
K
I
Q
T
K
Q
M
I
E
I
A
E
K
E
L
S
I
M
R
-
N
A
I
D
K
E
D
E
C
I
L
C
K
M
E
D
I
H
H
M
L
A
N
V
-
Q
T
L
-----
A
A
T
Y
Y
I
Q
A
Y
L
S
P
Y
T
E
S
S
S
--
F
I
T
T
A
I
Q
H
L
S
A
R
K
H
G
A
L
I
-
V
V
E
--
R
-
N
E
-
T
L
E
A
L
I
Q
--
T
G
T
T
L
N
A
H
L
T
A
P
L
L
E
S
I
F
Y
P
G
N
P
L
H
D
G
A
V
L
V
K
N
--
N
--
H
I
V
---
S
A
A
N
I
--
L
P
L
T
-
K
S
T
E
V
D
P
E
L
G
T
R
H
R
A
A
I
G
L
S
E
K
S
D
A
L
I
L
-----
V
V
S
E
E
T
G
R
T
S
F
A
L
N
G
I
L
Y
T
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
84.65
51%
-131
- C9 -
2FB5
-
?
A:
[30-203]
----------------------------------
S
I
M
R
-
N
A
I
D
K
E
D
E
C
I
L
C
K
M
E
D
I
H
H
M
L
A
N
V
-
Q
T
L
-----
A
A
T
Y
Y
I
Q
A
Y
L
S
P
Y
T
E
S
S
S
--
F
I
T
T
A
I
Q
H
L
S
A
R
K
H
G
A
L
I
-
V
V
E
--
R
-
N
E
-
T
L
E
A
L
I
Q
--
T
G
T
T
L
N
A
H
L
T
A
P
L
L
E
S
I
F
Y
P
G
N
P
L
H
D
G
A
V
L
V
K
N
--
N
--
H
I
V
---
S
A
A
N
I
--
L
P
L
T
K
S
T
E
-
V
D
P
E
L
G
T
R
H
R
A
A
I
G
L
S
E
K
S
D
A
L
I
L
-----
V
V
S
E
E
T
G
R
T
S
F
A
L
N
G
I
L
Y
T
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
70.64
43%
-112
- C9 -
4RV7
3
DACA_LISMO
B:
[35-160]
---------------------------------------------------------------------------------------------
I
E
K
S
T
Q
Y
M
A
K
R
R
I
G
A
L
I
-
S
V
A
--
R
-
D
T
-
G
M
D
D
Y
I
E
--
T
G
I
P
L
N
A
K
I
S
S
Q
L
L
I
N
I
F
I
P
N
T
P
L
H
D
G
A
V
I
I
K
G
--
N
--
E
I
A
---
S
A
A
S
Y
--
L
P
L
S
-
D
S
P
F
L
S
K
E
L
G
T
R
H
R
A
A
L
G
I
S
E
V
T
D
S
I
T
I
-----
V
V
S
E
E
T
G
G
I
S
L
T
K
G
G
E
L
F
R
D
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
70.20
43%
-112
- C9 -
4RV7
3
DACA_LISMO
C:
[35-160]
---------------------------------------------------------------------------------------------
I
E
K
S
T
Q
Y
M
A
K
R
R
I
G
A
L
I
-
S
V
A
--
R
-
D
T
-
G
M
D
D
Y
I
E
--
T
G
I
P
L
N
A
K
I
S
S
Q
L
L
I
N
I
F
I
P
N
T
P
L
H
D
G
A
V
I
I
K
G
--
N
--
E
I
A
---
S
A
A
S
Y
--
L
P
L
S
-
D
S
P
F
L
S
K
E
L
G
T
R
H
R
A
A
L
G
I
S
E
V
T
D
S
I
T
I
-----
V
V
S
E
E
T
G
G
I
S
L
T
K
G
G
E
L
F
R
D
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
70.19
43%
-112
- C9 -
4RV7
2
DACA_LISMO
D:
[35-160]
---------------------------------------------------------------------------------------------
I
E
K
S
T
Q
Y
M
A
K
R
R
I
G
A
L
I
-
S
V
A
--
R
-
D
T
-
G
M
D
D
Y
I
E
--
T
G
I
P
L
N
A
K
I
S
S
Q
L
L
I
N
I
F
I
P
N
T
P
L
H
D
G
A
V
I
I
K
G
--
N
--
E
I
A
---
S
A
A
S
Y
--
L
P
L
S
-
D
S
P
F
L
S
K
E
L
G
T
R
H
R
A
A
L
G
I
S
E
V
T
D
S
I
T
I
-----
V
V
S
E
E
T
G
G
I
S
L
T
K
G
G
E
L
F
R
D
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
69.29
43%
-111
- C9 -
4RV7
4
DACA_LISMO
A:
[35-160]
---------------------------------------------------------------------------------------------
I
E
K
S
T
Q
Y
M
A
K
R
R
I
G
A
L
I
-
S
V
A
--
R
-
D
T
-
G
M
D
D
Y
I
E
--
T
G
I
P
L
N
A
K
I
S
S
Q
L
L
I
N
I
F
I
P
N
T
P
L
H
D
G
A
V
I
I
K
G
--
N
--
E
I
A
---
S
A
A
S
Y
--
L
P
L
S
-
D
S
P
F
L
S
K
E
L
G
T
R
H
R
A
A
L
G
I
S
E
V
T
D
S
I
T
I
-----
V
V
S
E
E
T
G
G
I
S
L
T
K
G
G
E
L
F
R
D
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
68.74
37%
-101
- C9 -
4RV7
4
DACA_LISMO
A:
[18-162]
-------------------------------------------------------------------------
S
S
-
Y
G
S
R
I
E
R
E
Q
H
H
L
I
E
--
S
I
E
K
S
T
Q
Y
M
A
K
R
R
I
G
A
L
I
-
S
V
A
--
R
-
D
T
-
G
M
D
D
Y
I
E
--
T
G
I
P
L
N
A
K
I
S
S
Q
L
L
I
N
I
F
I
P
N
T
P
L
H
D
G
A
V
I
I
K
G
--
N
--
E
I
A
---
S
A
A
S
Y
--
L
P
L
S
-
D
S
P
F
L
S
K
E
L
G
T
R
H
R
A
A
L
G
I
S
E
V
T
D
S
I
T
I
-----
V
V
S
E
E
T
G
G
I
S
L
T
K
G
G
E
L
F
R
D
V
S
E
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
65.80
25%
-39
- C9 -
3C1Y
1
DISA_THEMA
A:
[27-375]
-------------------------------------------------------------------------
V
P
Q
E
L
I
E
K
I
K
L
I
S
P
G
T
---
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
-
F
L
V
--
D
D
P
K
-
K
Y
E
D
V
I
Q
--
G
G
F
W
L
D
T
D
F
S
A
E
K
L
Y
E
L
S
-----
K
M
D
G
A
I
V
L
S
E
--
D
IT
K
I
Y
---
Y
A
N
V
H
--
L
V
P
D
-
P
T
I
-
P
T
G
E
T
G
T
R
H
R
T
A
E
R
L
A
K
Q
T
G
K
V
V
I
-----
A
V
S
R
R
R
N
I
I
S
L
Y
Y
K
N
Y
K
Y
V
V
N
Q
V
D
F
L
I
S
K
V
T
Q
A
I
S
T
L
E
K
Y
K
D
N
F
N
K
L
L
S
E
L
E
V
L
E
L
E
NRVT
L
A
D
V
V
R
T
L
A
K
G
F
E
L
L
R
I
V
E
E
I
R
P
Y
I
V
E
L
GEEG
R
L
A
R
M
Q
L
R
E
L
T
ED
V
D
D
L
L
V
L
L
I
M
D
Y
SSEEVE
E
E
T
A
Q
N
I
L
Q
D
F
I
TRREPS
P
I
S
I
S
R
V
L
GYDVQQAAQLDD
V
L
V
S
A
RG
Y
R
L
L
K
TVARIP
L
S
I
G
Y
N
V
V
R
M
FKT
L
D
Q
I
S
K
AS
V
E
D
L
K
KVEGIG
E
K
R
A
R
A
I
S
E
S
I
S
S
L
K
H
R
KT
10
PsiBlast_PDB
53.95
28%
-7
- C9 -
3C1Y
1
DISA_THEMA
A:
[43-155]
--------------------------------------------------------------------------------------------
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
F
L
V
D
--
D
-
P
K
-
K
Y
E
D
V
I
Q
--
G
G
F
W
L
D
T
D
F
S
A
E
K
L
Y
E
L
-----
S
K
M
D
G
A
I
V
L
S
E
--
D
I-
T
K
I
---
Y
Y
A
N
V
H
L
V
P
D
P
-
T
I
P
-
T
G
-
E
T
G
T
R
H
R
T
A
E
R
L
A
K
Q
T
G
K
V
V
I
-----
A
V
S
R
R
R
N
I
I
S
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
53.67
28%
-7
- C9 -
3C23
2
DISA_THEMA
A:
[43-155]
--------------------------------------------------------------------------------------------
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
F
L
V
D
--
D
-
P
K
-
K
Y
E
D
V
I
Q
--
G
G
F
W
L
D
T
D
F
S
A
E
K
L
Y
E
L
-----
S
K
M
D
G
A
I
V
L
S
E
--
D
I-
T
K
I
---
Y
Y
A
N
V
H
L
V
P
D
P
-
T
I
P
-
T
G
-
E
T
G
T
R
H
R
T
A
E
R
L
A
K
Q
T
G
K
V
V
I
-----
A
V
S
R
R
R
N
I
I
S
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
53.14
28%
-5
- C9 -
4YXJ
2
DISA_THEMA
A:
[43-155]
--------------------------------------------------------------------------------------------
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
F
L
V
D
--
D
-
P
K
-
K
Y
E
D
V
I
Q
--
G
G
F
W
L
D
T
D
F
S
A
E
K
L
Y
E
L
-----
S
K
M
D
G
A
I
V
L
S
E
--
D
I-
T
K
I
---
Y
Y
A
N
V
H
L
V
P
D
P
-
T
I
P
-
T
G
-
E
T
G
T
R
H
R
T
A
E
R
L
A
K
Q
T
G
K
V
V
I
-----
A
V
S
R
R
R
N
I
I
S
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
52.62
27%
-36
- C9 -
3C1Y
1
DISA_THEMA
A:
[43-168]
--------------------------------------------------------------------------------------------
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
-
F
L
V
--
D
-
D
P
K
K
Y
E
D
V
I
Q
--
G
G
F
W
L
D
T
D
F
S
A
E
K
L
Y
E
L
S
-----
K
M
D
G
A
I
V
L
S
E
DI
T
--
K
I
Y
---
Y
A
N
V
H
--
L
V
P
D
-
P
T
I
-
P
T
G
E
T
G
T
R
H
R
T
A
E
R
L
A
K
Q
T
G
K
V
V
I
-----
A
V
S
R
R
R
N
I
I
S
L
Y
Y
K
N
Y
K
Y
V
V
N
Q
V
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
52.55
28%
-4
- C9 -
4YVZ
3
DISA_THEMA
A:
[43-155]
--------------------------------------------------------------------------------------------
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
F
L
V
D
--
D
-
P
K
-
K
Y
E
D
V
I
Q
--
G
G
F
W
L
D
T
D
F
S
A
E
K
L
Y
E
L
-----
S
K
M
D
G
A
I
V
L
S
E
--
D
I-
T
K
I
---
Y
Y
A
N
V
H
L
V
P
D
P
-
T
I
P
-
T
G
-
E
T
G
T
R
H
R
T
A
E
R
L
A
K
Q
T
G
K
V
V
I
-----
A
V
S
R
R
R
N
I
I
S
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
52.38
28%
-4
- C9 -
3C1Z
-
DISA_THEMA
A:
[23-135]
--------------------------------------------------------------------------------------------
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
F
L
V
D
--
D
-
P
K
-
K
Y
E
D
V
I
Q
--
G
G
F
W
L
D
T
D
F
S
A
E
K
L
Y
E
L
-----
S
K
M
D
G
A
I
V
L
S
E
--
D
I-
T
K
I
---
Y
Y
A
N
V
H
L
V
P
D
P
-
T
I
P
-
T
G
-
E
T
G
T
R
H
R
T
A
E
R
L
A
K
Q
T
G
K
V
V
I
-----
A
V
S
R
R
R
N
I
I
S
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
51.22
28%
-6
- C9 -
3C21
1
DISA_THEMA
A:
[43-155]
--------------------------------------------------------------------------------------------
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
F
L
V
D
--
D
-
P
K
-
K
Y
E
D
V
I
Q
--
G
G
F
W
L
D
T
D
F
S
A
E
K
L
Y
E
L
-----
S
K
M
D
G
A
I
V
L
S
E
--
D
I-
T
K
I
---
Y
Y
A
N
V
H
L
V
P
D
P
-
T
I
P
-
T
G
-
E
T
G
T
R
H
R
T
A
E
R
L
A
K
Q
T
G
K
V
V
I
-----
A
V
S
R
R
R
N
I
I
S
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
35.82
10%
-261
- C6 -
1M4E
-
A:
[1-20]
---------------------------------
I
C
I
F
C
-
C
G
C
C
H
R
S
K
C
G
M
C
C
K
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
35.21
23%
-158
- C5 -
1YRR
-
NAGA_ECOLI
A:
[15-37]
--------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
D
D
H
A
V
V
I
A
D
--
G
--
L
I
K
---
S
V
C
P
V
--
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
34.38
29%
-388
- C9 -
1LYP
-
A:
[8-31]
-----------------
K
F
R
N
K
I
K
E
K
L
K
K
I
G
Q
K
I
Q
G
L
L
-
P
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
31.04
26%
14
- C9 -
3ZBH
3
?
A:
[31-90]
------------------------------------------------
L
I
A
R
L
D
Q
M
S
H
T
L
Q
G
I
W
E
G
A
-----
S
S
E
A
F
I
Q
Q
Y
-
Q
E
L
R
P
S
F
E
--
K
M
A
V
L
L
N
E
V
G
Q
Q
L
H
N
S
A
T
-
I
L
E
--
D
-
T
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
30.56
15%
21
- C4 -
1SLM
4
?
?:
[16-250]
L
V
Q
K
Y
L
E
N
Y
Y
D
L
K
K
D
S
G
P
V
V
K
K
I
R
E
M
Q
K
F
L
G
L
E
V
T
G
K
L
D
S
D
T
L
E
V
M
R
K
P
R
C
G
V
P
D
V
G
H
F
R
T
F
P
-
G
I
P
KWRKT
H
L
T
Y
R
I
V
N
Y
T
P
D
L
P
K
D
A
V
D
S
A
V
E
K
A
L
K
V
W
E
E
V
T
P
L
T
F
S
-
R
L
Y
EG
E
-
A
D
-
I
M
I
S
F
A
V
R
E
H
G
D
F
Y
P
F
D
G
P
G
N
V
L
A
H
A
Y
A
P
G
P
G
I
N
G
D
A
H
F
D
D
D
--
E
--
Q
W
T
KDT
T
G
T
N
L
--
F
L
V
A
-
A
H
E
-
I
G
H
S
L
G
L
F
H
------
S
A
N
T
E
A
L
M
Y
PLYHS
L
T
D
L
T
R
F
R
L
S
Q
D
D
I
N
G
I
Q
S
L
Y
G
P
P
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------